Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 112.84791 * 2 1 4 4 C 1.53780 * 113.61448 * 228.80683 * 2 1 3 5 5 H 1.08998 * 113.61573 * 156.33794 * 4 2 1 6 6 C 1.50698 * 113.61520 * 25.42648 * 4 2 1 7 7 H 1.07998 * 120.00283 * 0.02562 * 6 4 2 8 8 C 1.37882 * 119.99697 * 180.02562 * 6 4 2 9 9 N 1.31514 * 120.00354 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 119.99624 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47236 * 60.00191 * 10 8 6 12 12 H 1.48506 * 109.46929 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47171 * 300.00017 * 10 8 6 14 14 C 1.54056 * 86.98381 * 270.83408 * 4 2 1 15 15 C 1.53781 * 113.61570 * 131.19539 * 2 1 3 16 16 H 1.09001 * 113.61158 * 203.66754 * 15 2 1 17 17 N 1.46496 * 113.61098 * 334.48482 * 15 2 1 18 18 C 1.34783 * 119.99469 * 204.99878 * 17 15 2 19 19 O 1.21506 * 120.00059 * 359.97438 * 18 17 15 20 20 O 1.34640 * 119.99659 * 180.02562 * 18 17 15 21 21 C 1.45203 * 116.99906 * 180.02562 * 20 18 17 22 22 C 1.52993 * 109.47123 * 59.99664 * 21 20 18 23 23 C 1.52996 * 109.47287 * 180.02562 * 21 20 18 24 24 C 1.53008 * 109.46979 * 299.99951 * 21 20 18 25 25 H 1.08994 * 109.47220 * 309.66484 * 1 2 3 26 26 H 1.08998 * 109.47216 * 69.67165 * 1 2 3 27 27 H 1.09002 * 109.46563 * 189.66396 * 1 2 3 28 28 H 0.96996 * 119.99821 * 179.97438 * 9 8 6 29 29 H 1.08991 * 113.62178 * 220.02250 * 14 4 2 30 30 H 1.09005 * 113.68486 * 89.12713 * 14 4 2 31 31 H 0.96998 * 120.00710 * 25.00085 * 17 15 2 32 32 H 1.08997 * 109.47103 * 60.00127 * 22 21 20 33 33 H 1.08997 * 109.47319 * 180.02562 * 22 21 20 34 34 H 1.08996 * 109.47484 * 300.00381 * 22 21 20 35 35 H 1.08999 * 109.47388 * 59.99666 * 23 21 20 36 36 H 1.08992 * 109.47578 * 180.02562 * 23 21 20 37 37 H 1.09002 * 109.47003 * 300.00099 * 23 21 20 38 38 H 1.09003 * 109.46880 * 59.99653 * 24 21 20 39 39 H 1.08997 * 109.46961 * 179.97438 * 24 21 20 40 40 H 1.09002 * 109.47018 * 300.00439 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1461 -0.9280 -1.0603 5 1 3.1591 -0.6485 -1.3496 6 6 1.2453 -1.1752 -2.2429 7 1 0.2693 -0.7145 -2.2839 8 6 1.6672 -1.9895 -3.2724 9 7 2.8554 -2.5509 -3.2223 10 14 0.5508 -2.2953 -4.7387 11 1 0.2441 -1.0042 -5.4051 12 1 1.2330 -3.1983 -5.7003 13 1 -0.7116 -2.9261 -4.2766 14 6 2.0931 -2.0425 0.0020 15 6 2.1461 -0.9280 1.0602 16 1 3.1592 -0.6484 1.3496 17 7 1.2712 -1.1667 2.2108 18 6 1.8022 -1.5068 3.4020 19 8 3.0065 -1.6160 3.5214 20 8 0.9981 -1.7266 4.4593 21 6 1.6391 -2.0888 5.7109 22 6 2.5871 -0.9678 6.1414 23 6 0.5729 -2.2976 6.7881 24 6 2.4326 -3.3832 5.5216 25 1 -0.3633 0.6559 0.7910 26 1 -0.3633 0.3570 -0.9636 27 1 -0.3632 -1.0131 0.1725 28 1 3.1520 -3.1240 -3.9464 29 1 2.9718 -2.6873 0.0026 30 1 1.1575 -2.6019 0.0034 31 1 0.3098 -1.0799 2.1154 32 1 2.0219 -0.0456 6.2761 33 1 3.0686 -1.2398 7.0806 34 1 3.3466 -0.8194 5.3738 35 1 -0.1022 -3.0964 6.4812 36 1 1.0540 -2.5690 7.7277 37 1 0.0073 -1.3757 6.9230 38 1 3.1921 -3.2349 4.7540 39 1 2.9141 -3.6548 6.4610 40 1 1.7572 -4.1819 5.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = -93.536732 kcal Electronic energy + Delta-G solvation = -19716.314305 eV Core-core repulsion = 16723.780709 eV Total energy + Delta-G solvation = -2992.533596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.84416 -40.32311 -37.86823 -35.40010 -34.66425 -33.61399 -30.08421 -28.33319 -28.30523 -28.24441 -24.91136 -24.46444 -22.70262 -21.10953 -19.81409 -19.05739 -18.08986 -17.51151 -17.11371 -16.63953 -16.41630 -15.89110 -15.53728 -15.31706 -14.49559 -14.39936 -14.07250 -13.48870 -13.29749 -13.09449 -13.01611 -12.93566 -12.86994 -12.82407 -12.76954 -12.65161 -12.34867 -12.26883 -12.15332 -12.03436 -11.45398 -11.34901 -11.05234 -10.76808 -10.60543 -10.39721 -9.90535 -8.08038 -6.15945 1.25992 1.45959 1.46676 1.53837 1.81509 2.47484 3.21599 3.28394 3.77282 3.79880 3.84018 3.98770 4.03381 4.12688 4.52597 4.55241 4.64224 4.69153 4.78464 4.79240 4.84561 4.88416 4.91343 5.01311 5.05754 5.15168 5.19610 5.30756 5.32150 5.36646 5.41288 5.54864 5.59611 5.73098 5.81155 5.96031 6.41265 6.54674 6.93904 7.42669 7.51733 9.02414 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.004414 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.748643 B = 6342.630901 C = 6456.190182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.103 4.103 3 H 0.073 0.927 4 C 0.028 3.972 5 H 0.021 0.979 6 C -0.514 4.514 7 H 0.075 0.925 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.952 3.048 11 H -0.268 1.268 12 H -0.293 1.293 13 H -0.269 1.269 14 C -0.129 4.129 15 C 0.149 3.851 16 H 0.094 0.906 17 N -0.685 5.685 18 C 0.643 3.357 19 O -0.599 6.599 20 O -0.369 6.369 21 C 0.122 3.878 22 C -0.179 4.179 23 C -0.133 4.133 24 C -0.182 4.182 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.258 0.742 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.414 0.586 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 2.318 18.191 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.123 4.123 3 H 0.092 0.908 4 C 0.009 3.991 5 H 0.039 0.961 6 C -0.551 4.551 7 H 0.093 0.907 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.778 3.222 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.194 1.194 14 C -0.169 4.169 15 C 0.045 3.955 16 H 0.112 0.888 17 N -0.344 5.344 18 C 0.397 3.603 19 O -0.490 6.490 20 O -0.284 6.284 21 C 0.085 3.915 22 C -0.236 4.236 23 C -0.190 4.190 24 C -0.239 4.239 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.541 2.135 18.250 19.192 hybrid contribution -0.171 -0.531 -1.253 1.372 sum -5.713 1.604 16.997 18.003 Atomic orbital electron populations 1.21401 0.92663 1.01436 1.01984 1.22802 0.97582 0.97526 0.94348 0.90824 1.19815 0.95294 0.92269 0.91732 0.96118 1.21464 1.02285 1.27891 1.03501 0.90739 1.25840 0.96180 0.96031 1.00993 1.70113 1.20268 1.32804 1.33725 0.85703 0.79089 0.78124 0.79281 1.19329 1.21893 1.19366 1.23421 0.99152 0.97350 0.96933 1.22563 0.93763 0.97789 0.81346 0.88814 1.44889 1.11589 1.71499 1.06423 1.18355 0.83826 0.76386 0.81736 1.90864 1.15023 1.58319 1.84823 1.86311 1.40480 1.82257 1.19333 1.22446 0.94303 0.94995 0.79719 1.22463 0.99954 0.98002 1.03195 1.21872 0.97538 1.03455 0.96140 1.22489 1.00959 0.96263 1.04176 0.91211 0.92027 0.92943 0.93352 0.95878 0.91558 0.74848 0.91699 0.88853 0.92418 0.91336 0.87751 0.90952 0.92571 0.88746 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 7.35 71.98 0.53 -3.24 16 2 C -0.10 -3.90 4.43 -10.27 -0.05 -3.95 16 3 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.03 1.37 3.39 -10.92 -0.04 1.33 16 5 H 0.02 1.14 8.13 -2.39 -0.02 1.12 16 6 C -0.51 -26.84 8.25 25.60 0.21 -26.63 16 7 H 0.07 3.65 5.76 -2.91 -0.02 3.64 16 8 C 0.01 0.42 5.46 84.66 0.46 0.88 16 9 N -0.93 -54.96 13.28 21.45 0.28 -54.67 16 10 Si 0.95 42.90 29.54 68.60 2.03 44.92 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 14 C -0.13 -5.93 7.09 31.21 0.22 -5.71 16 15 C 0.15 5.72 4.11 45.52 0.19 5.91 16 16 H 0.09 3.84 7.46 -2.39 -0.02 3.82 16 17 N -0.69 -22.62 5.25 -567.60 -2.98 -25.60 16 18 C 0.64 22.11 8.06 129.79 1.05 23.16 16 19 O -0.60 -23.65 11.48 19.82 0.23 -23.43 16 20 O -0.37 -10.66 9.94 -55.49 -0.55 -11.21 16 21 C 0.12 2.79 1.13 -10.79 -0.01 2.78 16 22 C -0.18 -3.96 8.37 71.98 0.60 -3.36 16 23 C -0.13 -1.99 8.85 71.98 0.64 -1.35 16 24 C -0.18 -4.32 8.37 71.98 0.60 -3.72 16 25 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 26 H 0.06 2.07 6.59 -2.39 -0.02 2.06 16 27 H 0.05 1.70 6.72 -2.39 -0.02 1.68 16 28 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 3.05 7.60 -2.38 -0.02 3.03 16 31 H 0.41 11.71 6.95 -92.71 -0.64 11.06 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.68 5.88 -2.39 -0.01 1.66 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.75 5.88 -2.39 -0.01 1.73 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.14 316.34 3.79 -60.35 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.38 Total: 23.53 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 4.40 Total: -13.90 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.69 Total: -80.27 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.32 Total: -34.64 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -64.14 3.79 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.191 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds