Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 112.90642 * 2 1 4 4 C 1.53787 * 113.61610 * 228.75407 * 2 1 3 5 5 H 1.08994 * 113.61447 * 156.33355 * 4 2 1 6 6 C 1.50702 * 113.61150 * 25.42902 * 4 2 1 7 7 H 1.08000 * 120.00032 * 0.02562 * 6 4 2 8 8 C 1.37881 * 119.99596 * 180.02562 * 6 4 2 9 9 N 1.31515 * 119.99645 * 180.02562 * 8 6 4 10 10 Si 1.86800 * 119.99931 * 0.02562 * 8 6 4 11 11 H 1.48501 * 109.47045 * 90.00261 * 10 8 6 12 12 H 1.48507 * 109.46686 * 209.99832 * 10 8 6 13 13 H 1.48490 * 109.47330 * 329.99733 * 10 8 6 14 14 C 1.53784 * 87.07923 * 270.88171 * 4 2 1 15 15 C 1.53779 * 87.08045 * 334.56667 * 14 4 2 16 16 H 1.09007 * 113.61642 * 139.98417 * 15 14 4 17 17 N 1.46506 * 113.69339 * 270.87506 * 15 14 4 18 18 C 1.34776 * 119.99649 * 252.54233 * 17 15 14 19 19 O 1.21512 * 120.00468 * 359.97438 * 18 17 15 20 20 O 1.34638 * 119.99542 * 179.97438 * 18 17 15 21 21 C 1.45206 * 116.99920 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47068 * 59.99631 * 21 20 18 23 23 C 1.52993 * 109.47134 * 179.97438 * 21 20 18 24 24 C 1.52999 * 109.46918 * 299.99631 * 21 20 18 25 25 H 1.09004 * 109.46638 * 191.24998 * 1 2 3 26 26 H 1.08993 * 109.46951 * 311.24672 * 1 2 3 27 27 H 1.08996 * 109.47178 * 71.24955 * 1 2 3 28 28 H 0.97000 * 119.99773 * 180.02562 * 9 8 6 29 29 H 1.09002 * 113.61478 * 89.11632 * 14 4 2 30 30 H 1.09004 * 113.61162 * 220.01809 * 14 4 2 31 31 H 0.96998 * 119.99623 * 72.52897 * 17 15 14 32 32 H 1.09003 * 109.47362 * 59.99999 * 22 21 20 33 33 H 1.09000 * 109.47105 * 180.02562 * 22 21 20 34 34 H 1.09000 * 109.47696 * 300.00073 * 22 21 20 35 35 H 1.09007 * 109.47295 * 60.00317 * 23 21 20 36 36 H 1.09005 * 109.47221 * 179.97438 * 23 21 20 37 37 H 1.08996 * 109.47689 * 299.99857 * 23 21 20 38 38 H 1.09000 * 109.47325 * 59.99891 * 24 21 20 39 39 H 1.09000 * 109.47255 * 179.97438 * 24 21 20 40 40 H 1.08999 * 109.47097 * 300.00165 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9542 1.0040 0.0000 4 6 2.1461 -0.9290 -1.0595 5 1 3.1591 -0.6497 -1.3490 6 6 1.2453 -1.1772 -2.2418 7 1 0.2693 -0.7165 -2.2833 8 6 1.6671 -1.9924 -3.2707 9 7 0.8812 -2.2086 -4.3028 10 14 3.3548 -2.7897 -3.1986 11 1 3.2502 -4.1101 -2.5270 12 1 3.8738 -2.9755 -4.5776 13 1 4.2821 -1.9176 -2.4341 14 6 2.0930 -2.0425 -0.0001 15 6 2.1461 -0.9291 1.0592 16 1 1.4946 -1.1087 1.9145 17 7 3.5069 -0.5526 1.4499 18 6 3.9838 -0.9090 2.6591 19 8 3.2849 -1.5421 3.4254 20 8 5.2346 -0.5634 3.0179 21 6 5.6815 -0.9804 4.3351 22 6 5.6332 -2.5066 4.4305 23 6 7.1165 -0.5008 4.5622 24 6 4.7659 -0.3736 5.4001 25 1 -0.3633 -1.0080 0.2005 26 1 -0.3633 0.6775 0.7726 27 1 -0.3633 0.3303 -0.9731 28 1 1.1778 -2.7824 -5.0264 29 1 1.1569 -2.6010 -0.0002 30 1 2.9718 -2.6874 -0.0002 31 1 4.0647 -0.0470 0.8383 32 1 6.2856 -2.9389 3.6717 33 1 5.9683 -2.8196 5.4194 34 1 4.6111 -2.8487 4.2685 35 1 7.1513 0.5866 4.4942 36 1 7.4518 -0.8134 5.5512 37 1 7.7686 -0.9334 3.8036 38 1 3.7437 -0.7155 5.2381 39 1 5.1010 -0.6869 6.3888 40 1 4.8002 0.7138 5.3320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = -71.461985 kcal Electronic energy + Delta-G solvation = -19806.600982 eV Core-core repulsion = 16815.024619 eV Total energy + Delta-G solvation = -2991.576363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66768 -38.97919 -36.68441 -34.22953 -33.11528 -32.03761 -28.50018 -27.51579 -27.44295 -26.84596 -23.41239 -22.77000 -21.39366 -19.90813 -18.33283 -17.60399 -16.81289 -16.34331 -15.97772 -15.30332 -14.72860 -14.42700 -14.27448 -13.79142 -13.48673 -12.84665 -12.66546 -12.52506 -12.38491 -12.10196 -11.97005 -11.92998 -11.64136 -11.50569 -11.43953 -11.32044 -11.09565 -10.77658 -10.64409 -10.34211 -9.91130 -9.78552 -9.53270 -9.17250 -8.86881 -8.58669 -8.49272 -6.06858 -4.05719 2.35123 3.05291 3.29739 3.37271 3.38991 4.32927 4.42979 4.63904 4.67563 4.82255 5.12764 5.29882 5.33956 5.42610 5.50432 5.52747 5.57116 5.65987 5.72212 5.77894 5.86440 5.99671 6.08289 6.22647 6.24730 6.30182 6.48493 6.48895 6.61331 6.71913 6.79672 6.87734 7.04734 7.08963 7.46243 7.73497 7.77996 8.53666 8.63013 8.98096 9.56734 11.05522 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029532 B = 0.005408 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.894155 B = 5176.183709 C = 5758.761434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 H 0.062 0.938 4 C -0.002 4.002 5 H 0.048 0.952 6 C -0.505 4.505 7 H 0.084 0.916 8 C 0.072 3.928 9 N -0.902 5.902 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.266 1.266 14 C -0.156 4.156 15 C 0.129 3.871 16 H 0.094 0.906 17 N -0.686 5.686 18 C 0.649 3.351 19 O -0.573 6.573 20 O -0.369 6.369 21 C 0.136 3.864 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.183 4.183 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.263 0.737 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.405 0.595 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.585 3.670 16.376 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.124 4.124 3 H 0.081 0.919 4 C -0.020 4.020 5 H 0.066 0.934 6 C -0.542 4.542 7 H 0.101 0.899 8 C -0.129 4.129 9 N -0.540 5.540 10 Si 0.702 3.298 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.191 1.191 14 C -0.195 4.195 15 C 0.025 3.975 16 H 0.112 0.888 17 N -0.343 5.343 18 C 0.402 3.598 19 O -0.463 6.463 20 O -0.284 6.284 21 C 0.099 3.901 22 C -0.241 4.241 23 C -0.197 4.197 24 C -0.240 4.240 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.239 0.761 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.278 3.253 16.638 19.326 hybrid contribution 1.275 -0.428 -0.341 1.387 sum 10.553 2.825 16.297 19.620 Atomic orbital electron populations 1.21407 0.93274 1.01194 1.01397 1.22653 0.96527 0.97287 0.95918 0.91927 1.20566 0.96692 0.91549 0.93238 0.93365 1.21052 1.02959 1.28846 1.01356 0.89858 1.24992 0.96753 0.96086 0.95075 1.69905 1.36802 1.38263 1.09050 0.86890 0.85578 0.80345 0.76976 1.20367 1.21701 1.19064 1.23805 1.01264 0.97287 0.97121 1.22247 0.79935 0.98363 0.96913 0.88836 1.44549 1.16588 1.58572 1.14552 1.18092 0.80338 0.78419 0.82915 1.90860 1.59162 1.44095 1.52163 1.86299 1.30326 1.74601 1.37151 1.21996 0.94323 0.94905 0.78870 1.22519 1.05215 0.94126 1.02256 1.21851 0.93196 1.02288 1.02400 1.22512 1.02527 1.00993 0.97964 0.92452 0.94609 0.90899 0.92745 0.89227 0.93567 0.76066 0.92233 0.91385 0.89196 0.91554 0.90333 0.91521 0.89234 0.91390 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.67 37.16 0.32 -1.73 16 2 C -0.10 -1.93 4.21 -89.81 -0.38 -2.31 16 3 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.00 -0.04 2.57 -90.95 -0.23 -0.27 16 5 H 0.05 1.08 6.60 -51.93 -0.34 0.74 16 6 C -0.50 -13.35 8.79 -34.44 -0.30 -13.65 16 7 H 0.08 2.34 5.96 -52.49 -0.31 2.03 16 8 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 10 Si 0.87 21.36 27.01 -169.99 -4.59 16.77 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.27 -6.19 6.26 56.52 0.35 -5.83 16 14 C -0.16 -3.21 6.35 -25.92 -0.16 -3.37 16 15 C 0.13 2.32 3.88 -67.12 -0.26 2.06 16 16 H 0.09 1.70 7.42 -51.93 -0.39 1.32 16 17 N -0.69 -11.38 5.27 -57.93 -0.31 -11.68 16 18 C 0.65 10.92 8.06 54.05 0.44 11.35 16 19 O -0.57 -10.58 11.48 -19.28 -0.22 -10.80 16 20 O -0.37 -5.46 9.94 -40.32 -0.40 -5.86 16 21 C 0.14 1.63 1.13 -90.63 -0.10 1.53 16 22 C -0.18 -2.20 8.37 37.15 0.31 -1.89 16 23 C -0.14 -1.25 8.85 37.15 0.33 -0.92 16 24 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 25 H 0.06 1.04 7.34 -51.93 -0.38 0.66 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.40 6.50 -51.93 -0.34 1.07 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.09 1.89 7.60 -51.93 -0.39 1.49 16 30 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.40 6.11 8.81 -40.82 -0.36 5.75 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 35 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.25 5.88 -51.93 -0.31 0.95 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -29.92 314.37 -6.36 -36.28 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.53 Total: 5.79 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 0.17 Total: -9.05 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.47 Total: -37.87 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.62 Total: -16.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.59 Total: 16.77 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.92 -6.36 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.182 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds