Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 112.90642 * 2 1 4 4 C 1.53787 * 113.61610 * 228.75407 * 2 1 3 5 5 H 1.08994 * 113.61447 * 156.33355 * 4 2 1 6 6 C 1.50702 * 113.61150 * 25.42902 * 4 2 1 7 7 H 1.08000 * 120.00032 * 0.02562 * 6 4 2 8 8 C 1.37881 * 119.99596 * 180.02562 * 6 4 2 9 9 N 1.31515 * 119.99645 * 180.02562 * 8 6 4 10 10 Si 1.86800 * 119.99931 * 0.02562 * 8 6 4 11 11 H 1.48501 * 109.47045 * 90.00261 * 10 8 6 12 12 H 1.48507 * 109.46686 * 209.99832 * 10 8 6 13 13 H 1.48490 * 109.47330 * 329.99733 * 10 8 6 14 14 C 1.53784 * 87.07923 * 270.88171 * 4 2 1 15 15 C 1.53779 * 87.08045 * 334.56667 * 14 4 2 16 16 H 1.09007 * 113.61642 * 139.98417 * 15 14 4 17 17 N 1.46506 * 113.69339 * 270.87506 * 15 14 4 18 18 C 1.34776 * 119.99649 * 252.54233 * 17 15 14 19 19 O 1.21512 * 120.00468 * 359.97438 * 18 17 15 20 20 O 1.34638 * 119.99542 * 179.97438 * 18 17 15 21 21 C 1.45206 * 116.99920 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47068 * 59.99631 * 21 20 18 23 23 C 1.52993 * 109.47134 * 179.97438 * 21 20 18 24 24 C 1.52999 * 109.46918 * 299.99631 * 21 20 18 25 25 H 1.09004 * 109.46638 * 191.24998 * 1 2 3 26 26 H 1.08993 * 109.46951 * 311.24672 * 1 2 3 27 27 H 1.08996 * 109.47178 * 71.24955 * 1 2 3 28 28 H 0.97000 * 119.99773 * 180.02562 * 9 8 6 29 29 H 1.09002 * 113.61478 * 89.11632 * 14 4 2 30 30 H 1.09004 * 113.61162 * 220.01809 * 14 4 2 31 31 H 0.96998 * 119.99623 * 72.52897 * 17 15 14 32 32 H 1.09003 * 109.47362 * 59.99999 * 22 21 20 33 33 H 1.09000 * 109.47105 * 180.02562 * 22 21 20 34 34 H 1.09000 * 109.47696 * 300.00073 * 22 21 20 35 35 H 1.09007 * 109.47295 * 60.00317 * 23 21 20 36 36 H 1.09005 * 109.47221 * 179.97438 * 23 21 20 37 37 H 1.08996 * 109.47689 * 299.99857 * 23 21 20 38 38 H 1.09000 * 109.47325 * 59.99891 * 24 21 20 39 39 H 1.09000 * 109.47255 * 179.97438 * 24 21 20 40 40 H 1.08999 * 109.47097 * 300.00165 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9542 1.0040 0.0000 4 6 2.1461 -0.9290 -1.0595 5 1 3.1591 -0.6497 -1.3490 6 6 1.2453 -1.1772 -2.2418 7 1 0.2693 -0.7165 -2.2833 8 6 1.6671 -1.9924 -3.2707 9 7 0.8812 -2.2086 -4.3028 10 14 3.3548 -2.7897 -3.1986 11 1 3.2502 -4.1101 -2.5270 12 1 3.8738 -2.9755 -4.5776 13 1 4.2821 -1.9176 -2.4341 14 6 2.0930 -2.0425 -0.0001 15 6 2.1461 -0.9291 1.0592 16 1 1.4946 -1.1087 1.9145 17 7 3.5069 -0.5526 1.4499 18 6 3.9838 -0.9090 2.6591 19 8 3.2849 -1.5421 3.4254 20 8 5.2346 -0.5634 3.0179 21 6 5.6815 -0.9804 4.3351 22 6 5.6332 -2.5066 4.4305 23 6 7.1165 -0.5008 4.5622 24 6 4.7659 -0.3736 5.4001 25 1 -0.3633 -1.0080 0.2005 26 1 -0.3633 0.6775 0.7726 27 1 -0.3633 0.3303 -0.9731 28 1 1.1778 -2.7824 -5.0264 29 1 1.1569 -2.6010 -0.0002 30 1 2.9718 -2.6874 -0.0002 31 1 4.0647 -0.0470 0.8383 32 1 6.2856 -2.9389 3.6717 33 1 5.9683 -2.8196 5.4194 34 1 4.6111 -2.8487 4.2685 35 1 7.1513 0.5866 4.4942 36 1 7.4518 -0.8134 5.5512 37 1 7.7686 -0.9334 3.8036 38 1 3.7437 -0.7155 5.2381 39 1 5.1010 -0.6869 6.3888 40 1 4.8002 0.7138 5.3320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = -90.785537 kcal Electronic energy + Delta-G solvation = -19807.438914 eV Core-core repulsion = 16815.024619 eV Total energy + Delta-G solvation = -2992.414295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.90802 -40.45341 -37.91155 -35.41381 -34.66172 -33.80358 -30.06729 -28.71761 -28.33989 -28.26926 -24.88624 -24.40225 -22.81379 -21.08202 -19.82378 -18.99037 -18.67038 -17.57636 -17.17428 -16.70734 -16.46051 -15.64332 -15.45493 -15.27884 -14.76361 -14.37616 -14.25527 -13.94343 -13.32867 -13.22521 -13.10136 -13.03811 -12.90944 -12.87089 -12.84146 -12.61772 -12.51560 -12.32070 -12.23279 -11.71299 -11.37217 -11.24617 -11.06980 -10.94299 -10.71661 -10.52427 -10.02885 -8.21745 -6.22792 1.17085 1.35258 1.37539 1.45283 1.76188 2.38770 3.11284 3.17038 3.71512 3.78012 3.82231 3.91739 3.97250 4.17309 4.37074 4.49289 4.63415 4.64328 4.72549 4.78463 4.81486 4.86719 4.89994 4.90707 5.02540 5.06908 5.14210 5.21829 5.29513 5.31156 5.38145 5.44117 5.52493 5.56989 5.72671 5.84679 6.43910 6.46514 6.85041 7.36650 7.42442 8.93865 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029532 B = 0.005408 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.894155 B = 5176.183709 C = 5758.761434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.013 4.013 5 H 0.052 0.948 6 C -0.498 4.498 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.952 5.952 10 Si 0.929 3.071 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.244 1.244 14 C -0.155 4.155 15 C 0.151 3.849 16 H 0.096 0.904 17 N -0.684 5.684 18 C 0.649 3.351 19 O -0.592 6.592 20 O -0.370 6.370 21 C 0.122 3.878 22 C -0.181 4.181 23 C -0.135 4.135 24 C -0.179 4.179 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.262 0.738 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.413 0.587 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.812 4.405 18.669 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 H 0.101 0.899 4 C -0.032 4.032 5 H 0.070 0.930 6 C -0.535 4.535 7 H 0.074 0.926 8 C -0.182 4.182 9 N -0.593 5.593 10 Si 0.755 3.245 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.167 1.167 14 C -0.195 4.195 15 C 0.046 3.954 16 H 0.114 0.886 17 N -0.342 5.342 18 C 0.403 3.597 19 O -0.483 6.483 20 O -0.285 6.285 21 C 0.086 3.914 22 C -0.239 4.239 23 C -0.192 4.192 24 C -0.236 4.236 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.249 0.751 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.536 4.011 18.958 22.552 hybrid contribution 0.542 -0.631 -0.983 1.288 sum 12.078 3.380 17.975 21.918 Atomic orbital electron populations 1.21367 0.92959 1.01411 1.01317 1.22585 0.96784 0.97855 0.94131 0.89864 1.20600 0.96223 0.93903 0.92472 0.92967 1.21383 1.02517 1.27170 1.02470 0.92592 1.25757 1.00283 0.97196 0.94977 1.70045 1.38955 1.40068 1.10262 0.85988 0.81889 0.79632 0.76989 1.20388 1.21930 1.16729 1.23693 1.00637 0.97399 0.97745 1.21876 0.80837 0.96488 0.96173 0.88618 1.44435 1.16163 1.58695 1.14916 1.18169 0.80866 0.78042 0.82642 1.90867 1.59887 1.44801 1.52708 1.86320 1.28931 1.74404 1.38836 1.22462 0.96176 0.95058 0.77730 1.22488 1.03287 0.94253 1.03833 1.21884 0.90737 1.02613 1.03923 1.22467 1.00761 1.01212 0.99149 0.93396 0.91415 0.92948 0.92925 0.90284 0.93915 0.75075 0.92351 0.88713 0.92237 0.91035 0.87680 0.91470 0.92106 0.88832 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.92 8.67 71.98 0.62 -3.29 16 2 C -0.09 -3.32 4.21 -10.27 -0.04 -3.36 16 3 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.01 -0.57 2.57 -11.01 -0.03 -0.60 16 5 H 0.05 2.22 6.60 -2.39 -0.02 2.21 16 6 C -0.50 -26.63 8.79 25.60 0.23 -26.40 16 7 H 0.06 3.25 5.96 -2.91 -0.02 3.23 16 8 C 0.01 0.82 5.47 84.66 0.46 1.28 16 9 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 10 Si 0.93 43.96 27.01 68.60 1.85 45.82 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.24 -10.54 6.26 99.48 0.62 -9.92 16 14 C -0.16 -6.25 6.35 31.12 0.20 -6.05 16 15 C 0.15 5.14 3.88 45.52 0.18 5.32 16 16 H 0.10 3.31 7.42 -2.38 -0.02 3.29 16 17 N -0.68 -21.21 5.27 -567.59 -2.99 -24.21 16 18 C 0.65 20.70 8.06 129.79 1.05 21.75 16 19 O -0.59 -21.21 11.48 19.80 0.23 -20.98 16 20 O -0.37 -10.17 9.94 -55.47 -0.55 -10.72 16 21 C 0.12 2.62 1.13 -10.80 -0.01 2.60 16 22 C -0.18 -3.97 8.37 71.98 0.60 -3.37 16 23 C -0.13 -1.92 8.85 71.98 0.64 -1.28 16 24 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 25 H 0.05 1.72 7.34 -2.38 -0.02 1.70 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 2.03 6.50 -2.39 -0.02 2.01 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.08 3.33 7.60 -2.39 -0.02 3.31 16 30 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 31 H 0.41 11.38 8.81 -92.71 -0.82 10.56 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.27 314.37 3.45 -61.82 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.12 Total: 22.95 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.49 Total: -16.44 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.69 Total: -82.44 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.32 Total: -31.70 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.85 Total: 45.82 kcal Total: -65.27 3.45 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.970 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds