Wall clock time and date at job start Mon Mar 30 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 112.85178 * 2 1 4 4 C 1.53780 * 113.61286 * 228.80008 * 2 1 3 5 5 H 1.08997 * 113.61515 * 334.65471 * 4 2 1 6 6 C 1.50701 * 113.61394 * 105.47633 * 4 2 1 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 4 2 8 8 C 1.37871 * 119.99694 * 180.27703 * 6 4 2 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 4 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 4 11 11 H 1.48494 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47301 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47430 * 239.99516 * 10 8 6 14 14 C 1.53782 * 87.07995 * 220.02124 * 4 2 1 15 15 C 1.53782 * 87.08374 * 25.43378 * 14 4 2 16 16 H 1.09003 * 113.69206 * 220.01013 * 15 14 4 17 17 N 1.46501 * 113.61468 * 89.11302 * 15 14 4 18 18 C 1.34777 * 119.99465 * 107.50539 * 17 15 14 19 19 O 1.21512 * 120.00364 * 0.02562 * 18 17 15 20 20 O 1.34638 * 119.99811 * 179.97438 * 18 17 15 21 21 C 1.45198 * 117.00501 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.46741 * 59.99998 * 21 20 18 23 23 C 1.52993 * 109.47408 * 180.02562 * 21 20 18 24 24 C 1.53007 * 109.46933 * 300.00568 * 21 20 18 25 25 H 1.08993 * 109.47537 * 191.19714 * 1 2 3 26 26 H 1.09003 * 109.47436 * 311.20572 * 1 2 3 27 27 H 1.09003 * 109.46954 * 71.20018 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 29 29 H 1.09001 * 113.61602 * 139.98004 * 14 4 2 30 30 H 1.09002 * 113.61850 * 270.88495 * 14 4 2 31 31 H 0.97001 * 120.00001 * 287.50637 * 17 15 14 32 32 H 1.09001 * 109.47272 * 60.00668 * 22 21 20 33 33 H 1.09005 * 109.47216 * 180.02562 * 22 21 20 34 34 H 1.09002 * 109.47665 * 300.00300 * 22 21 20 35 35 H 1.08994 * 109.47281 * 60.00023 * 23 21 20 36 36 H 1.09000 * 109.47130 * 180.02562 * 23 21 20 37 37 H 1.09001 * 109.47191 * 299.99691 * 23 21 20 38 38 H 1.08996 * 109.46800 * 59.99629 * 24 21 20 39 39 H 1.09000 * 109.46770 * 179.97438 * 24 21 20 40 40 H 1.08994 * 109.46949 * 299.99483 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1460 -0.9281 -1.0602 5 1 1.4939 -1.7515 -1.3516 6 6 2.7254 -0.1940 -2.2419 7 1 2.6809 0.8844 -2.2823 8 6 3.3066 -0.8993 -3.2741 9 7 3.3604 -2.2124 -3.2250 10 14 4.0178 0.0103 -4.7426 11 1 3.8320 1.4719 -4.5569 12 1 5.4666 -0.2940 -4.8591 13 1 3.3198 -0.4238 -5.9793 14 6 3.1922 -1.3136 -0.0012 15 6 2.1459 -0.9301 1.0586 16 1 2.5637 -0.4007 1.9150 17 7 1.2702 -2.0385 1.4468 18 6 1.4123 -2.6180 2.6553 19 8 2.2663 -2.2209 3.4230 20 8 0.6071 -3.6364 3.0123 21 6 0.8165 -4.2121 4.3287 22 6 0.6131 -3.1339 5.3950 23 6 -0.1836 -5.3478 4.5537 24 6 2.2414 -4.7614 4.4243 25 1 -0.3634 -1.0080 0.1995 26 1 -0.3634 0.6770 0.7732 27 1 -0.3633 0.3312 -0.9729 28 1 3.7689 -2.7086 -3.9515 29 1 3.4442 -2.3741 -0.0021 30 1 4.0711 -0.6688 -0.0005 31 1 0.5882 -2.3553 0.8340 32 1 -0.4020 -2.7425 5.3269 33 1 0.7707 -3.5659 6.3833 34 1 1.3259 -2.3250 5.2346 35 1 -0.0382 -6.1158 3.7941 36 1 -0.0266 -5.7796 5.5421 37 1 -1.1988 -4.9568 4.4855 38 1 2.9541 -3.9525 4.2638 39 1 2.3987 -5.1932 5.4127 40 1 2.3864 -5.5295 3.6647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:37 Heat of formation + Delta-G solvation = -74.390282 kcal Electronic energy + Delta-G solvation = -19764.051129 eV Core-core repulsion = 16772.347785 eV Total energy + Delta-G solvation = -2991.703344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53450 -38.73248 -36.46872 -34.07604 -32.96065 -31.83258 -29.02955 -27.42439 -27.34604 -26.36315 -23.22624 -21.97903 -21.64597 -19.90707 -18.21244 -18.00978 -16.46475 -16.19399 -15.83956 -14.73470 -14.50181 -14.42594 -14.25114 -13.44356 -13.31034 -12.94665 -12.63482 -12.51250 -12.38850 -12.15243 -11.87274 -11.82535 -11.66115 -11.36788 -11.21625 -11.05919 -10.90738 -10.73034 -10.42024 -10.29211 -10.16208 -9.78492 -9.54544 -8.88362 -8.79348 -8.46775 -8.27676 -6.02600 -4.05538 2.50342 3.20863 3.29192 3.37807 3.41129 4.43386 4.48601 4.73858 4.77345 4.92128 5.26010 5.41058 5.42451 5.51530 5.62362 5.65571 5.70084 5.75147 5.83960 5.87647 5.95354 6.04999 6.20419 6.28826 6.32128 6.39564 6.54730 6.65479 6.71208 6.79053 6.93246 7.10733 7.28844 7.38863 7.77825 7.94308 7.96180 8.41550 8.78702 8.96851 9.59088 11.07196 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.037472 B = 0.004624 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.053397 B = 6054.423824 C = 6309.925580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 H 0.091 0.909 4 C 0.048 3.952 5 H 0.052 0.948 6 C -0.511 4.511 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.138 4.138 15 C 0.127 3.873 16 H 0.087 0.913 17 N -0.680 5.680 18 C 0.649 3.351 19 O -0.577 6.577 20 O -0.369 6.369 21 C 0.136 3.864 22 C -0.182 4.182 23 C -0.140 4.140 24 C -0.184 4.184 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.259 0.741 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.405 0.595 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 -3.693 13.525 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 H 0.109 0.891 4 C 0.029 3.971 5 H 0.070 0.930 6 C -0.549 4.549 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.177 4.177 15 C 0.024 3.976 16 H 0.105 0.895 17 N -0.338 5.338 18 C 0.402 3.598 19 O -0.467 6.467 20 O -0.284 6.284 21 C 0.099 3.901 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.241 4.241 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.172 -3.706 13.855 15.614 hybrid contribution 0.225 0.159 -1.109 1.143 sum -5.947 -3.547 12.746 14.506 Atomic orbital electron populations 1.21605 0.96406 1.00205 1.00954 1.23160 0.94379 0.99175 0.97496 0.89075 1.20032 0.92474 0.93499 0.91051 0.93019 1.21119 1.37404 0.92975 1.03434 0.92398 1.25002 0.95954 0.94765 0.98039 1.69969 1.44501 1.05654 1.32610 0.86608 0.78834 0.80122 0.82854 1.19731 1.21081 1.21090 1.23471 0.97715 1.00358 0.96154 1.22195 0.92218 0.86477 0.96750 0.89482 1.44603 1.38823 1.35982 1.14370 1.18096 0.79956 0.78741 0.83028 1.90845 1.37334 1.66278 1.52232 1.86296 1.57849 1.47178 1.37062 1.21968 0.96289 0.92824 0.78991 1.22511 1.03214 1.00310 0.97929 1.21846 0.98698 0.96828 1.02348 1.22517 0.96604 1.02823 1.02156 0.93633 0.94143 0.92309 0.93087 0.92934 0.90565 0.75826 0.92358 0.91498 0.89235 0.91484 0.90428 0.91615 0.89179 0.91515 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.53 37.16 0.35 -1.89 16 2 C -0.12 -2.38 3.87 -89.81 -0.35 -2.73 16 3 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 4 C 0.05 1.13 2.87 -90.96 -0.26 0.87 16 5 H 0.05 1.32 8.08 -51.93 -0.42 0.90 16 6 C -0.51 -13.57 8.75 -34.44 -0.30 -13.87 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.48 13.28 55.43 0.74 -24.74 16 10 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C -0.14 -3.09 7.43 -25.92 -0.19 -3.28 16 15 C 0.13 2.44 4.19 -67.11 -0.28 2.16 16 16 H 0.09 1.68 7.46 -51.93 -0.39 1.29 16 17 N -0.68 -12.09 4.70 -57.93 -0.27 -12.37 16 18 C 0.65 11.59 8.06 54.06 0.44 12.03 16 19 O -0.58 -11.22 11.48 -19.28 -0.22 -11.44 16 20 O -0.37 -5.82 9.94 -40.32 -0.40 -6.22 16 21 C 0.14 1.74 1.13 -90.62 -0.10 1.64 16 22 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 23 C -0.14 -1.34 8.85 37.15 0.33 -1.01 16 24 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 25 H 0.04 0.71 5.89 -51.93 -0.31 0.41 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 31 H 0.41 6.79 7.00 -40.82 -0.29 6.51 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.31 5.88 -51.93 -0.31 1.01 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.40 5.88 -51.93 -0.31 1.10 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -29.16 321.06 -6.81 -35.97 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.62 Total: 6.34 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.16 Total: -8.35 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.46 Total: -37.11 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.62 Total: -17.66 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.16 -6.81 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.421 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds