Wall clock time and date at job start Mon Mar 30 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 112.85178 * 2 1 4 4 C 1.53780 * 113.61286 * 228.80008 * 2 1 3 5 5 H 1.08997 * 113.61515 * 334.65471 * 4 2 1 6 6 C 1.50701 * 113.61394 * 105.47633 * 4 2 1 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 4 2 8 8 C 1.37871 * 119.99694 * 180.27703 * 6 4 2 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 4 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 4 11 11 H 1.48494 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47301 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47430 * 239.99516 * 10 8 6 14 14 C 1.53782 * 87.07995 * 220.02124 * 4 2 1 15 15 C 1.53782 * 87.08374 * 25.43378 * 14 4 2 16 16 H 1.09003 * 113.69206 * 220.01013 * 15 14 4 17 17 N 1.46501 * 113.61468 * 89.11302 * 15 14 4 18 18 C 1.34777 * 119.99465 * 107.50539 * 17 15 14 19 19 O 1.21512 * 120.00364 * 0.02562 * 18 17 15 20 20 O 1.34638 * 119.99811 * 179.97438 * 18 17 15 21 21 C 1.45198 * 117.00501 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.46741 * 59.99998 * 21 20 18 23 23 C 1.52993 * 109.47408 * 180.02562 * 21 20 18 24 24 C 1.53007 * 109.46933 * 300.00568 * 21 20 18 25 25 H 1.08993 * 109.47537 * 191.19714 * 1 2 3 26 26 H 1.09003 * 109.47436 * 311.20572 * 1 2 3 27 27 H 1.09003 * 109.46954 * 71.20018 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 29 29 H 1.09001 * 113.61602 * 139.98004 * 14 4 2 30 30 H 1.09002 * 113.61850 * 270.88495 * 14 4 2 31 31 H 0.97001 * 120.00001 * 287.50637 * 17 15 14 32 32 H 1.09001 * 109.47272 * 60.00668 * 22 21 20 33 33 H 1.09005 * 109.47216 * 180.02562 * 22 21 20 34 34 H 1.09002 * 109.47665 * 300.00300 * 22 21 20 35 35 H 1.08994 * 109.47281 * 60.00023 * 23 21 20 36 36 H 1.09000 * 109.47130 * 180.02562 * 23 21 20 37 37 H 1.09001 * 109.47191 * 299.99691 * 23 21 20 38 38 H 1.08996 * 109.46800 * 59.99629 * 24 21 20 39 39 H 1.09000 * 109.46770 * 179.97438 * 24 21 20 40 40 H 1.08994 * 109.46949 * 299.99483 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1460 -0.9281 -1.0602 5 1 1.4939 -1.7515 -1.3516 6 6 2.7254 -0.1940 -2.2419 7 1 2.6809 0.8844 -2.2823 8 6 3.3066 -0.8993 -3.2741 9 7 3.3604 -2.2124 -3.2250 10 14 4.0178 0.0103 -4.7426 11 1 3.8320 1.4719 -4.5569 12 1 5.4666 -0.2940 -4.8591 13 1 3.3198 -0.4238 -5.9793 14 6 3.1922 -1.3136 -0.0012 15 6 2.1459 -0.9301 1.0586 16 1 2.5637 -0.4007 1.9150 17 7 1.2702 -2.0385 1.4468 18 6 1.4123 -2.6180 2.6553 19 8 2.2663 -2.2209 3.4230 20 8 0.6071 -3.6364 3.0123 21 6 0.8165 -4.2121 4.3287 22 6 0.6131 -3.1339 5.3950 23 6 -0.1836 -5.3478 4.5537 24 6 2.2414 -4.7614 4.4243 25 1 -0.3634 -1.0080 0.1995 26 1 -0.3634 0.6770 0.7732 27 1 -0.3633 0.3312 -0.9729 28 1 3.7689 -2.7086 -3.9515 29 1 3.4442 -2.3741 -0.0021 30 1 4.0711 -0.6688 -0.0005 31 1 0.5882 -2.3553 0.8340 32 1 -0.4020 -2.7425 5.3269 33 1 0.7707 -3.5659 6.3833 34 1 1.3259 -2.3250 5.2346 35 1 -0.0382 -6.1158 3.7941 36 1 -0.0266 -5.7796 5.5421 37 1 -1.1988 -4.9568 4.4855 38 1 2.9541 -3.9525 4.2638 39 1 2.3987 -5.1932 5.4127 40 1 2.3864 -5.5295 3.6647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:37 Heat of formation + Delta-G solvation = -91.670864 kcal Electronic energy + Delta-G solvation = -19764.800471 eV Core-core repulsion = 16772.347785 eV Total energy + Delta-G solvation = -2992.452686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88010 -40.28064 -37.81050 -35.34622 -34.67316 -33.51218 -30.55957 -28.32977 -28.32192 -28.24459 -24.84738 -23.58725 -23.23593 -21.15117 -19.80057 -19.41480 -18.37915 -17.43818 -17.14371 -16.57844 -16.02930 -15.73643 -15.35447 -15.01598 -14.65916 -14.44163 -14.17906 -13.89575 -13.57225 -13.29344 -13.09978 -12.91559 -12.86337 -12.82699 -12.77978 -12.54181 -12.30955 -12.23946 -12.23555 -11.90658 -11.37120 -11.34867 -11.05394 -10.81550 -10.54590 -10.40297 -9.94362 -8.10889 -6.19440 1.21890 1.41527 1.44361 1.54971 1.79913 2.45491 3.19652 3.21686 3.79660 3.79953 3.84082 3.98680 4.04103 4.24482 4.51076 4.56438 4.64712 4.66745 4.74912 4.79522 4.83767 4.87096 4.90826 4.91393 5.09910 5.13618 5.20605 5.32316 5.33713 5.38674 5.41155 5.46015 5.60764 5.65495 5.77382 6.00655 6.40931 6.50261 6.90559 7.39618 7.48451 8.98789 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.037472 B = 0.004624 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.053397 B = 6054.423824 C = 6309.925580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 H 0.096 0.904 4 C 0.036 3.964 5 H 0.028 0.972 6 C -0.522 4.522 7 H 0.059 0.941 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.951 3.049 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.282 1.282 14 C -0.139 4.139 15 C 0.148 3.852 16 H 0.092 0.908 17 N -0.679 5.679 18 C 0.649 3.351 19 O -0.594 6.594 20 O -0.371 6.371 21 C 0.121 3.879 22 C -0.178 4.178 23 C -0.134 4.134 24 C -0.182 4.182 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.259 0.741 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 -3.429 14.700 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 H 0.114 0.886 4 C 0.017 3.983 5 H 0.046 0.954 6 C -0.560 4.560 7 H 0.077 0.923 8 C -0.186 4.186 9 N -0.565 5.565 10 Si 0.777 3.223 11 H -0.187 1.187 12 H -0.211 1.211 13 H -0.208 1.208 14 C -0.179 4.179 15 C 0.043 3.957 16 H 0.110 0.890 17 N -0.338 5.338 18 C 0.403 3.597 19 O -0.485 6.485 20 O -0.286 6.286 21 C 0.085 3.915 22 C -0.235 4.235 23 C -0.191 4.191 24 C -0.239 4.239 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.342 -3.443 15.042 17.089 hybrid contribution 0.592 0.020 -1.408 1.527 sum -6.750 -3.423 13.635 15.594 Atomic orbital electron populations 1.21565 0.94028 1.01399 1.01698 1.22987 0.96356 0.98406 0.94898 0.88604 1.19991 0.93012 0.93879 0.91411 0.95411 1.21524 1.36874 0.93258 1.04358 0.92273 1.25768 0.96580 0.95440 1.00848 1.70092 1.45807 1.07101 1.33505 0.85618 0.77803 0.79347 0.79562 1.18707 1.21146 1.20823 1.23382 0.98114 0.98522 0.97847 1.21856 0.91125 0.86600 0.96072 0.89016 1.44507 1.38677 1.35873 1.14747 1.18165 0.79891 0.78987 0.82705 1.90848 1.38077 1.66888 1.52726 1.86317 1.57146 1.46204 1.38952 1.22472 0.97282 0.93963 0.77794 1.22460 1.02633 0.99298 0.99084 1.21881 0.97903 0.95401 1.03924 1.22489 0.95965 1.01621 1.03795 0.92918 0.91665 0.92608 0.93230 0.95486 0.91322 0.75256 0.91733 0.88741 0.92162 0.91600 0.87559 0.90985 0.92349 0.88561 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.53 71.98 0.69 -3.40 16 2 C -0.11 -4.06 3.87 -10.27 -0.04 -4.10 16 3 H 0.10 3.56 8.09 -2.39 -0.02 3.54 16 4 C 0.04 1.70 2.87 -11.01 -0.03 1.67 16 5 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 6 C -0.52 -27.91 8.75 25.60 0.22 -27.68 16 7 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -54.21 13.28 21.45 0.28 -53.93 16 10 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 C -0.14 -6.41 7.43 31.12 0.23 -6.18 16 15 C 0.15 5.64 4.19 45.52 0.19 5.83 16 16 H 0.09 3.47 7.46 -2.39 -0.02 3.45 16 17 N -0.68 -24.00 4.70 -567.59 -2.67 -26.67 16 18 C 0.65 23.01 8.06 129.79 1.05 24.06 16 19 O -0.59 -23.18 11.48 19.80 0.23 -22.95 16 20 O -0.37 -11.39 9.94 -55.48 -0.55 -11.94 16 21 C 0.12 2.89 1.13 -10.79 -0.01 2.88 16 22 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 23 C -0.13 -2.18 8.85 71.98 0.64 -1.55 16 24 C -0.18 -4.44 8.37 71.98 0.60 -3.84 16 25 H 0.05 1.57 5.89 -2.39 -0.01 1.56 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.07 3.21 8.09 -2.39 -0.02 3.19 16 31 H 0.41 13.62 7.00 -92.71 -0.65 12.97 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -63.47 321.06 4.29 -59.18 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.37 Total: 25.49 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.60 Total: -14.52 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.38 Total: -80.60 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.32 Total: -34.89 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -63.47 4.29 -59.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.486 kcal (2) G-P(sol) polarization free energy of solvation -63.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds