Wall clock time and date at job start Mon Mar 30 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.27678 * 59.29444 * 9 7 2 11 11 C 1.54597 * 110.30463 * 297.20442 * 9 7 2 12 12 C 1.55103 * 102.84580 * 219.18773 * 11 9 7 13 13 N 1.48535 * 103.28338 * 37.30378 * 12 11 9 14 14 C 1.46904 * 111.00151 * 200.33129 * 13 12 11 15 15 C 1.52995 * 109.47391 * 287.40290 * 14 13 12 16 16 C 1.52581 * 109.22511 * 295.59509 * 15 14 13 17 17 C 1.53124 * 109.94835 * 168.96323 * 16 15 14 18 18 S 1.81740 * 108.80810 * 63.08466 * 17 16 15 19 19 C 1.81756 * 102.22311 * 306.71914 * 18 17 16 20 20 C 1.52584 * 109.22892 * 174.40003 * 15 14 13 21 21 C 1.47897 * 105.82384 * 320.84741 * 13 12 11 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.08991 * 110.72630 * 337.48304 * 11 9 7 24 24 H 1.08999 * 110.72368 * 100.77450 * 11 9 7 25 25 H 1.09008 * 110.59600 * 278.87567 * 12 11 9 26 26 H 1.08996 * 110.83552 * 155.85164 * 12 11 9 27 27 H 1.09006 * 109.46809 * 47.40026 * 14 13 12 28 28 H 1.08997 * 109.47080 * 167.39593 * 14 13 12 29 29 H 1.09001 * 109.22314 * 54.99276 * 15 14 13 30 30 H 1.08998 * 109.39016 * 289.15108 * 16 15 14 31 31 H 1.09003 * 109.38836 * 48.85595 * 16 15 14 32 32 H 1.09000 * 109.60472 * 303.27974 * 17 16 15 33 33 H 1.08993 * 109.57489 * 182.87595 * 17 16 15 34 34 H 1.09005 * 109.57081 * 293.45941 * 19 18 17 35 35 H 1.08993 * 109.68098 * 173.13875 * 19 18 17 36 36 H 1.08993 * 109.38613 * 311.14310 * 20 15 14 37 37 H 1.09003 * 109.38950 * 70.94540 * 20 15 14 38 38 H 1.08995 * 109.92062 * 265.97526 * 21 13 12 39 39 H 1.09001 * 109.91783 * 144.68151 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6104 -2.5654 -0.8788 11 6 0.4083 -2.6320 1.2898 12 6 0.5677 -4.1315 1.6529 13 7 1.9791 -4.4219 1.2922 14 6 2.1893 -5.8640 1.1075 15 6 2.1622 -6.5618 2.4687 16 6 3.3377 -6.0709 3.3085 17 6 3.1773 -6.5409 4.7570 18 16 3.2204 -8.3574 4.7918 19 6 1.9422 -8.7960 3.5763 20 6 2.2411 -8.0714 2.2612 21 6 2.2343 -3.6839 0.0361 22 1 -0.4850 -0.8401 -0.0004 23 1 0.8107 -1.9991 2.0806 24 1 -0.6363 -2.3899 1.0944 25 1 -0.1140 -4.7437 1.0623 26 1 0.4021 -4.2922 2.7181 27 1 1.3982 -6.2685 0.4760 28 1 3.1555 -6.0323 0.6320 29 1 1.2302 -6.3178 2.9786 30 1 4.2661 -6.4688 2.8990 31 1 3.3703 -4.9816 3.2835 32 1 2.2235 -6.1906 5.1517 33 1 3.9927 -6.1445 5.3619 34 1 0.9644 -8.4897 3.9480 35 1 1.9485 -9.8731 3.4094 36 1 1.5120 -8.3718 1.5088 37 1 3.2421 -8.3383 1.9221 38 1 2.0607 -4.3362 -0.8197 39 1 3.2601 -3.3157 0.0236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:41 Heat of formation + Delta-G solvation = -21.291544 kcal Electronic energy + Delta-G solvation = -17423.287593 eV Core-core repulsion = 14876.639654 eV Total energy + Delta-G solvation = -2546.647939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.84619 -36.83575 -33.39274 -31.58705 -30.66266 -28.34328 -27.62702 -24.11842 -23.23610 -23.04984 -20.79728 -19.88378 -19.46805 -16.96813 -16.90460 -15.52712 -15.11010 -14.52324 -14.29012 -14.12542 -13.75394 -13.73374 -13.12905 -12.94386 -12.73099 -12.67562 -12.04778 -11.74894 -11.54827 -11.32016 -11.18142 -10.85615 -10.65667 -10.51164 -10.41162 -10.32920 -10.09332 -9.81435 -9.75621 -9.57649 -8.46245 -8.34883 -7.85304 -7.79621 -6.32034 -4.03652 1.68820 2.43583 3.45028 3.46536 3.65028 4.31360 4.54761 4.59506 4.66747 4.86418 4.94305 5.13961 5.21953 5.27833 5.38646 5.47880 5.56906 5.59787 5.65577 5.72092 5.83545 5.88183 5.93116 5.97516 6.06982 6.14337 6.31748 6.33122 6.43829 6.68105 6.83958 6.97468 7.23396 7.29408 7.64933 7.76154 8.24420 8.44774 8.90073 9.67322 11.05865 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.041570 B = 0.004357 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.400139 B = 6424.289094 C = 6655.564700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 1.067 2.933 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.587 4.587 8 H 0.050 0.950 9 C 0.025 3.975 10 H 0.018 0.982 11 C -0.109 4.109 12 C 0.034 3.966 13 N -0.512 5.512 14 C 0.053 3.947 15 C -0.088 4.088 16 C -0.111 4.111 17 C -0.074 4.074 18 S -0.286 6.286 19 C -0.075 4.075 20 C -0.118 4.118 21 C 0.053 3.947 22 H 0.270 0.730 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.019 0.981 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -15.358 6.148 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.186 4.186 3 Si 0.895 3.105 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.625 4.625 8 H 0.068 0.932 9 C 0.006 3.994 10 H 0.036 0.964 11 C -0.148 4.148 12 C -0.094 4.094 13 N -0.236 5.236 14 C -0.076 4.076 15 C -0.107 4.107 16 C -0.149 4.149 17 C -0.222 4.222 18 S -0.060 6.060 19 C -0.224 4.224 20 C -0.157 4.157 21 C -0.074 4.074 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.305 -14.223 7.174 16.502 hybrid contribution -1.169 -1.295 -1.334 2.197 sum 3.136 -15.518 5.840 16.875 Atomic orbital electron populations 1.70802 1.06858 1.30862 1.46573 1.25773 0.96550 1.02516 0.93725 0.83571 0.74906 0.75482 0.76506 1.20892 1.21550 1.21451 1.21986 0.93923 0.91120 1.55487 0.93171 1.19640 0.93024 0.93760 0.92995 0.96372 1.22710 0.99333 0.92176 1.00558 1.23308 0.88447 0.98446 0.99194 1.64675 1.21918 1.05615 1.31422 1.22247 1.00599 0.89582 0.95155 1.21080 0.99382 0.93307 0.96890 1.21690 0.98204 1.03401 0.91642 1.23505 1.05588 0.91933 1.01213 1.86758 1.53290 1.09414 1.56546 1.23387 0.99094 1.03530 0.96358 1.21767 1.02975 0.95038 0.95917 1.22938 1.01684 0.94908 0.87902 0.91807 0.91357 0.92992 0.95337 0.91778 0.95225 0.91266 0.91220 0.91255 0.88570 0.90014 0.87985 0.90066 0.88116 0.91024 0.90621 0.96281 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.12 13.43 55.43 0.74 -26.38 16 2 C 0.02 0.52 5.33 -17.82 -0.10 0.42 16 3 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.59 -16.24 8.39 -34.44 -0.29 -16.53 16 8 H 0.05 1.39 7.34 -52.48 -0.39 1.00 16 9 C 0.02 0.61 2.55 -90.41 -0.23 0.38 16 10 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 11 C -0.11 -2.48 5.50 -24.78 -0.14 -2.61 16 12 C 0.03 0.62 5.91 -1.81 -0.01 0.61 16 13 N -0.51 -9.27 4.48 -230.34 -1.03 -10.30 16 14 C 0.05 0.77 4.06 -3.82 -0.02 0.75 16 15 C -0.09 -1.06 1.97 -91.05 -0.18 -1.24 16 16 C -0.11 -1.35 5.03 -26.88 -0.14 -1.49 16 17 C -0.07 -0.83 6.46 37.22 0.24 -0.59 16 18 S -0.29 -3.27 22.33 -107.50 -2.40 -5.67 16 19 C -0.08 -0.73 6.45 37.20 0.24 -0.49 16 20 C -0.12 -1.19 5.05 -26.90 -0.14 -1.32 16 21 C 0.05 1.11 6.32 -2.75 -0.02 1.09 16 22 H 0.27 7.90 5.57 -40.82 -0.23 7.68 16 23 H 0.07 1.70 7.86 -51.93 -0.41 1.29 16 24 H 0.05 1.20 7.03 -51.93 -0.36 0.83 16 25 H 0.03 0.50 7.81 -51.92 -0.41 0.10 16 26 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 27 H 0.03 0.43 7.76 -51.93 -0.40 0.02 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.07 0.90 7.09 -51.93 -0.37 0.53 16 30 H 0.07 0.84 8.05 -51.93 -0.42 0.43 16 31 H 0.10 1.37 7.42 -51.93 -0.39 0.99 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 37 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.02 0.37 7.77 -51.93 -0.40 -0.03 16 39 H 0.07 1.60 7.39 -51.93 -0.38 1.21 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -28.81 307.98 -10.60 -39.41 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.71 Total: -0.63 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.76 Total: -21.01 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.29 Total: -36.68 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.40 Total: -5.67 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.81 -10.60 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.122 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds