Wall clock time and date at job start Mon Mar 30 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.27678 * 59.29444 * 9 7 2 11 11 C 1.54597 * 110.30463 * 297.20442 * 9 7 2 12 12 C 1.55103 * 102.84580 * 219.18773 * 11 9 7 13 13 N 1.48535 * 103.28338 * 37.30378 * 12 11 9 14 14 C 1.46904 * 111.00151 * 200.33129 * 13 12 11 15 15 C 1.52995 * 109.47391 * 287.40290 * 14 13 12 16 16 C 1.52581 * 109.22511 * 295.59509 * 15 14 13 17 17 C 1.53124 * 109.94835 * 168.96323 * 16 15 14 18 18 S 1.81740 * 108.80810 * 63.08466 * 17 16 15 19 19 C 1.81756 * 102.22311 * 306.71914 * 18 17 16 20 20 C 1.52584 * 109.22892 * 174.40003 * 15 14 13 21 21 C 1.47897 * 105.82384 * 320.84741 * 13 12 11 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.08991 * 110.72630 * 337.48304 * 11 9 7 24 24 H 1.08999 * 110.72368 * 100.77450 * 11 9 7 25 25 H 1.09008 * 110.59600 * 278.87567 * 12 11 9 26 26 H 1.08996 * 110.83552 * 155.85164 * 12 11 9 27 27 H 1.09006 * 109.46809 * 47.40026 * 14 13 12 28 28 H 1.08997 * 109.47080 * 167.39593 * 14 13 12 29 29 H 1.09001 * 109.22314 * 54.99276 * 15 14 13 30 30 H 1.08998 * 109.39016 * 289.15108 * 16 15 14 31 31 H 1.09003 * 109.38836 * 48.85595 * 16 15 14 32 32 H 1.09000 * 109.60472 * 303.27974 * 17 16 15 33 33 H 1.08993 * 109.57489 * 182.87595 * 17 16 15 34 34 H 1.09005 * 109.57081 * 293.45941 * 19 18 17 35 35 H 1.08993 * 109.68098 * 173.13875 * 19 18 17 36 36 H 1.08993 * 109.38613 * 311.14310 * 20 15 14 37 37 H 1.09003 * 109.38950 * 70.94540 * 20 15 14 38 38 H 1.08995 * 109.92062 * 265.97526 * 21 13 12 39 39 H 1.09001 * 109.91783 * 144.68151 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6104 -2.5654 -0.8788 11 6 0.4083 -2.6320 1.2898 12 6 0.5677 -4.1315 1.6529 13 7 1.9791 -4.4219 1.2922 14 6 2.1893 -5.8640 1.1075 15 6 2.1622 -6.5618 2.4687 16 6 3.3377 -6.0709 3.3085 17 6 3.1773 -6.5409 4.7570 18 16 3.2204 -8.3574 4.7918 19 6 1.9422 -8.7960 3.5763 20 6 2.2411 -8.0714 2.2612 21 6 2.2343 -3.6839 0.0361 22 1 -0.4850 -0.8401 -0.0004 23 1 0.8107 -1.9991 2.0806 24 1 -0.6363 -2.3899 1.0944 25 1 -0.1140 -4.7437 1.0623 26 1 0.4021 -4.2922 2.7181 27 1 1.3982 -6.2685 0.4760 28 1 3.1555 -6.0323 0.6320 29 1 1.2302 -6.3178 2.9786 30 1 4.2661 -6.4688 2.8990 31 1 3.3703 -4.9816 3.2835 32 1 2.2235 -6.1906 5.1517 33 1 3.9927 -6.1445 5.3619 34 1 0.9644 -8.4897 3.9480 35 1 1.9485 -9.8731 3.4094 36 1 1.5120 -8.3718 1.5088 37 1 3.2421 -8.3383 1.9221 38 1 2.0607 -4.3362 -0.8197 39 1 3.2601 -3.3157 0.0236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:40 Heat of formation + Delta-G solvation = -36.863290 kcal Electronic energy + Delta-G solvation = -17423.962835 eV Core-core repulsion = 14876.639654 eV Total energy + Delta-G solvation = -2547.323180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25852 -38.08528 -35.27296 -32.45479 -32.25129 -30.07532 -28.92856 -26.07922 -24.47108 -23.98692 -22.14562 -21.55565 -20.81921 -18.98036 -17.85054 -17.03669 -16.44465 -15.67604 -15.58288 -15.38909 -15.32829 -14.66281 -14.61137 -14.24702 -13.95482 -13.79218 -13.60675 -13.31056 -12.95416 -12.64283 -12.56177 -12.28940 -12.23968 -11.96814 -11.93398 -11.76589 -11.51134 -11.47422 -11.21256 -10.60631 -10.54088 -10.45639 -9.31487 -8.67925 -8.56490 -6.28826 0.85998 1.54113 1.60728 1.61519 1.80551 2.58950 3.02062 3.22766 3.57468 3.78111 3.87561 4.03250 4.07281 4.12853 4.24004 4.31779 4.36071 4.36955 4.44838 4.56628 4.66237 4.70688 4.80150 4.80929 4.83486 4.88684 4.99590 5.03829 5.07166 5.16997 5.34764 5.35537 5.40454 5.48462 6.01526 6.11680 6.20891 6.26149 6.69093 7.49913 8.82213 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.041570 B = 0.004357 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.400139 B = 6424.289094 C = 6655.564700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.030 4.030 3 Si 1.111 2.889 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.600 4.600 8 H 0.044 0.956 9 C 0.013 3.987 10 H -0.007 1.007 11 C -0.102 4.102 12 C 0.048 3.952 13 N -0.516 5.516 14 C 0.054 3.946 15 C -0.080 4.080 16 C -0.105 4.105 17 C -0.068 4.068 18 S -0.311 6.311 19 C -0.068 4.068 20 C -0.111 4.111 21 C 0.064 3.936 22 H 0.261 0.739 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -16.884 6.561 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.229 4.229 3 Si 0.934 3.066 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.638 4.638 8 H 0.063 0.937 9 C -0.006 4.006 10 H 0.011 0.989 11 C -0.141 4.141 12 C -0.079 4.079 13 N -0.240 5.240 14 C -0.074 4.074 15 C -0.099 4.099 16 C -0.144 4.144 17 C -0.216 4.216 18 S -0.085 6.085 19 C -0.215 4.215 20 C -0.150 4.150 21 C -0.064 4.064 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.829 -15.783 7.589 18.167 hybrid contribution -1.331 -0.869 -1.483 2.174 sum 3.498 -16.652 6.106 18.078 Atomic orbital electron populations 1.70907 1.07760 1.30422 1.48625 1.27133 0.96652 1.06115 0.92956 0.82993 0.74162 0.71729 0.77726 1.21098 1.19749 1.19887 1.22351 0.93935 0.92736 1.54821 0.93740 1.19668 0.93708 0.94431 0.92824 0.98900 1.22466 0.97888 0.95085 0.98637 1.23184 0.88986 0.95128 1.00630 1.64645 1.21588 1.07997 1.29813 1.22342 1.01109 0.87113 0.96872 1.21019 0.99026 0.94631 0.95242 1.21601 0.98384 1.01904 0.92546 1.23435 1.05904 0.91797 1.00472 1.86884 1.54406 1.09558 1.57698 1.23441 0.98388 1.04526 0.95195 1.21702 1.03573 0.93185 0.96576 1.22676 0.99757 0.94106 0.89878 0.92817 0.94107 0.94210 0.93944 0.89751 0.94430 0.90742 0.91576 0.91256 0.90799 0.89915 0.87485 0.89505 0.86357 0.89570 0.90509 0.94953 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 13.43 21.45 0.29 -56.66 16 2 C -0.03 -1.73 5.33 84.65 0.45 -1.28 16 3 Si 1.11 50.46 29.90 68.60 2.05 52.51 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.60 -33.82 8.39 25.60 0.21 -33.60 16 8 H 0.04 2.49 7.34 -2.91 -0.02 2.47 16 9 C 0.01 0.64 2.55 -10.66 -0.03 0.61 16 10 H -0.01 -0.39 8.00 -2.39 -0.02 -0.41 16 11 C -0.10 -4.71 5.50 31.86 0.18 -4.53 16 12 C 0.05 1.72 5.91 86.71 0.51 2.23 16 13 N -0.52 -17.99 4.48 -882.66 -3.95 -21.94 16 14 C 0.05 1.42 4.06 86.30 0.35 1.77 16 15 C -0.08 -1.74 1.97 -11.07 -0.02 -1.76 16 16 C -0.11 -2.40 5.03 30.50 0.15 -2.25 16 17 C -0.07 -1.40 6.46 72.02 0.47 -0.93 16 18 S -0.31 -6.46 22.33 -56.49 -1.26 -7.72 16 19 C -0.07 -1.09 6.45 72.01 0.46 -0.62 16 20 C -0.11 -1.87 5.05 30.49 0.15 -1.72 16 21 C 0.06 2.63 6.32 86.45 0.55 3.18 16 22 H 0.26 15.80 5.57 -92.71 -0.52 15.29 16 23 H 0.04 2.07 7.86 -2.39 -0.02 2.05 16 24 H 0.04 1.89 7.03 -2.39 -0.02 1.87 16 25 H 0.04 1.40 7.81 -2.38 -0.02 1.39 16 26 H 0.08 2.68 7.67 -2.39 -0.02 2.66 16 27 H 0.04 0.96 7.76 -2.38 -0.02 0.94 16 28 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 29 H 0.07 1.51 7.09 -2.39 -0.02 1.49 16 30 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 31 H 0.07 2.04 7.42 -2.39 -0.02 2.02 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 37 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.03 1.23 7.77 -2.39 -0.02 1.21 16 39 H 0.06 2.67 7.39 -2.39 -0.02 2.65 16 Total: -1.00 -62.41 307.98 1.81 -60.60 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.25 Total: 12.12 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.44 Total: -38.91 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -3.66 Total: -78.60 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.05 Total: 52.51 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -1.26 Total: -7.72 kcal Total: -62.41 1.81 -60.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.740 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds