Wall clock time and date at job start Mon Mar 30 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48504 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47050 * 300.00411 * 3 2 1 6 6 H 1.48501 * 109.47014 * 60.00144 * 3 2 1 7 7 C 1.37876 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99719 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.41889 * 302.31220 * 9 7 2 11 11 C 1.54898 * 110.37591 * 64.62714 * 9 7 2 12 12 C 1.55140 * 101.65642 * 155.89811 * 11 9 7 13 13 C 1.54320 * 103.01546 * 324.34717 * 12 11 9 14 14 N 1.47440 * 107.23474 * 22.28152 * 13 12 11 15 15 C 1.46904 * 110.99838 * 123.25673 * 14 13 12 16 16 C 1.53002 * 109.46856 * 69.87608 * 15 14 13 17 17 H 1.08999 * 109.38869 * 304.79660 * 16 15 14 18 18 C 1.52586 * 109.38731 * 184.99830 * 16 15 14 19 19 C 1.52575 * 110.72456 * 169.17215 * 18 16 15 20 20 C 1.53102 * 109.95374 * 70.67734 * 19 18 16 21 21 S 1.81739 * 108.84117 * 296.97150 * 20 19 18 22 22 C 1.53098 * 109.39057 * 64.50443 * 16 15 14 23 23 H 0.96999 * 120.00114 * 359.97438 * 1 2 3 24 24 H 1.09003 * 110.99086 * 37.80519 * 11 9 7 25 25 H 1.09003 * 111.02261 * 274.00839 * 11 9 7 26 26 H 1.08999 * 110.70740 * 205.96065 * 12 11 9 27 27 H 1.09003 * 110.85197 * 82.79477 * 12 11 9 28 28 H 1.09003 * 109.88635 * 262.87351 * 13 12 11 29 29 H 1.09007 * 109.88758 * 141.68653 * 13 12 11 30 30 H 1.08998 * 109.47280 * 309.87567 * 15 14 13 31 31 H 1.09000 * 109.46733 * 189.86866 * 15 14 13 32 32 H 1.09004 * 109.22563 * 289.49566 * 18 16 15 33 33 H 1.09001 * 109.22349 * 48.85412 * 18 16 15 34 34 H 1.09000 * 109.39151 * 190.82091 * 19 18 16 35 35 H 1.09004 * 109.39609 * 310.52727 * 19 18 16 36 36 H 1.09003 * 109.57550 * 177.16316 * 20 19 18 37 37 H 1.08997 * 109.57619 * 56.78199 * 20 19 18 38 38 H 1.08999 * 109.57329 * 302.97323 * 22 16 15 39 39 H 1.08992 * 109.57536 * 63.36893 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5882 -2.5556 0.8630 11 6 0.4419 -2.6548 -1.3122 12 6 0.2928 -4.1961 -1.4076 13 6 1.6341 -4.7105 -0.8437 14 7 2.1939 -3.6379 -0.0011 15 6 2.4416 -4.1170 1.3653 16 6 3.6101 -5.1047 1.3554 17 1 3.4002 -5.9063 0.6473 18 6 3.7861 -5.6951 2.7513 19 6 4.7577 -6.8711 2.7216 20 6 6.1812 -6.3666 2.4707 21 16 6.2454 -5.5808 0.8332 22 6 4.8880 -4.3761 0.9312 23 1 -0.4850 0.8400 0.0004 24 1 0.9989 -2.2630 -2.1634 25 1 -0.5322 -2.1726 -1.2304 26 1 0.1657 -4.5076 -2.4443 27 1 -0.5406 -4.5438 -0.7971 28 1 2.3186 -4.9349 -1.6618 29 1 1.4653 -5.6042 -0.2428 30 1 1.5486 -4.6144 1.7435 31 1 2.6863 -3.2713 2.0080 32 1 4.1735 -4.9262 3.4200 33 1 2.8195 -6.0373 3.1208 34 1 4.7223 -7.3940 3.6773 35 1 4.4712 -7.5573 1.9245 36 1 6.8766 -7.2055 2.5007 37 1 6.4509 -5.6388 3.2359 38 1 4.7383 -3.9144 -0.0448 39 1 5.1325 -3.6095 1.6664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:57 Heat of formation + Delta-G solvation = -17.686954 kcal Electronic energy + Delta-G solvation = -17664.507939 eV Core-core repulsion = 15118.016307 eV Total energy + Delta-G solvation = -2546.491632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.52128 -36.59987 -32.91866 -32.26061 -29.67722 -28.19602 -27.15570 -25.00313 -24.15718 -21.85327 -20.60707 -19.54737 -19.07084 -16.69334 -16.25221 -15.44251 -15.07643 -14.56378 -14.27630 -14.17321 -13.59192 -13.27007 -12.87204 -12.76974 -12.43221 -12.19420 -11.96790 -11.46449 -11.29101 -11.23144 -11.07046 -10.87727 -10.80196 -10.56274 -10.25747 -10.24130 -9.94101 -9.73688 -9.60419 -9.44002 -8.97478 -8.40341 -7.53088 -7.22724 -6.00808 -4.01425 1.97440 2.74962 3.30932 3.39195 3.44351 4.41960 4.66138 4.70964 4.94043 5.05014 5.20554 5.30655 5.36202 5.46342 5.59573 5.63280 5.66216 5.74710 5.83069 5.94484 5.98875 6.03957 6.11120 6.18852 6.28762 6.32262 6.46740 6.57267 6.61703 6.66977 7.03488 7.09994 7.45558 7.53999 7.88038 8.13406 8.25357 8.54026 9.05355 9.62772 11.08629 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.006178 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.919590 B = 4531.354983 C = 5184.764703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.063 0.937 9 C 0.209 3.791 10 H 0.012 0.988 11 C -0.103 4.103 12 C -0.151 4.151 13 C 0.046 3.954 14 N -0.524 5.524 15 C 0.066 3.934 16 C -0.081 4.081 17 H 0.077 0.923 18 C -0.126 4.126 19 C -0.118 4.118 20 C -0.080 4.080 21 S -0.293 6.293 22 C -0.052 4.052 23 H 0.259 0.741 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -12.083 4.238 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.104 3.896 10 H 0.030 0.970 11 C -0.142 4.142 12 C -0.190 4.190 13 C -0.082 4.082 14 N -0.248 5.248 15 C -0.065 4.065 16 C -0.102 4.102 17 H 0.096 0.904 18 C -0.164 4.164 19 C -0.157 4.157 20 C -0.228 4.228 21 S -0.066 6.066 22 C -0.200 4.200 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.396 -11.996 3.188 14.449 hybrid contribution -1.219 0.927 1.342 2.036 sum 6.177 -11.070 4.530 13.462 Atomic orbital electron populations 1.69966 1.05892 1.26404 1.51318 1.24950 0.94854 0.99080 0.95487 0.86507 0.80220 0.83683 0.77421 1.19680 1.21127 1.21243 1.21083 0.93427 0.89204 1.49348 0.91842 1.20118 0.88526 0.87828 0.93172 0.97008 1.22615 1.01189 0.90590 0.99815 1.22881 0.96808 0.99771 0.99523 1.22727 0.94853 0.93613 0.97056 1.63599 1.46756 1.06279 1.08214 1.22154 0.94712 0.97161 0.92426 1.21366 0.94714 0.97976 0.96113 0.90434 1.21581 0.99678 0.97532 0.97588 1.21692 0.93303 0.98396 1.02326 1.23384 1.00280 1.02542 0.96641 1.86821 1.47882 1.49442 1.22426 1.23482 0.92390 0.96759 1.07380 0.93156 0.92512 0.91042 0.92703 0.93065 0.92050 0.94542 0.95774 0.90650 0.91785 0.91307 0.91329 0.90840 0.88478 0.90222 0.85978 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 12.27 55.43 0.68 -24.75 16 2 C 0.06 1.57 5.34 -17.82 -0.10 1.47 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.29 8.82 -34.44 -0.30 -13.60 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.21 5.13 2.28 -67.34 -0.15 4.97 16 10 H 0.01 0.33 7.81 -51.93 -0.41 -0.08 16 11 C -0.10 -2.40 5.86 -24.60 -0.14 -2.54 16 12 C -0.15 -2.86 6.94 -24.91 -0.17 -3.03 16 13 C 0.05 0.84 6.14 -2.84 -0.02 0.82 16 14 N -0.52 -10.75 4.18 -224.75 -0.94 -11.69 16 15 C 0.07 1.18 3.90 -3.82 -0.01 1.16 16 16 C -0.08 -1.18 2.01 -90.78 -0.18 -1.36 16 17 H 0.08 1.17 6.96 -51.93 -0.36 0.81 16 18 C -0.13 -1.51 4.92 -27.16 -0.13 -1.64 16 19 C -0.12 -1.22 5.75 -26.90 -0.15 -1.38 16 20 C -0.08 -0.87 6.45 37.21 0.24 -0.63 16 21 S -0.29 -4.15 22.33 -107.50 -2.40 -6.55 16 22 C -0.05 -0.81 5.65 37.21 0.21 -0.60 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 25 H 0.07 1.79 7.57 -51.93 -0.39 1.39 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.60 6.94 -51.93 -0.36 0.24 16 30 H 0.02 0.43 7.91 -51.93 -0.41 0.01 16 31 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.12 2.16 7.66 -51.93 -0.40 1.76 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -27.55 311.97 -10.83 -38.37 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.93 Total: -0.05 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.92 Total: -16.35 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.26 Total: -36.43 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.40 Total: -6.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.55 -10.83 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.686 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds