Wall clock time and date at job start Mon Mar 30 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48504 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47050 * 300.00411 * 3 2 1 6 6 H 1.48501 * 109.47014 * 60.00144 * 3 2 1 7 7 C 1.37876 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99719 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.41889 * 302.31220 * 9 7 2 11 11 C 1.54898 * 110.37591 * 64.62714 * 9 7 2 12 12 C 1.55140 * 101.65642 * 155.89811 * 11 9 7 13 13 C 1.54320 * 103.01546 * 324.34717 * 12 11 9 14 14 N 1.47440 * 107.23474 * 22.28152 * 13 12 11 15 15 C 1.46904 * 110.99838 * 123.25673 * 14 13 12 16 16 C 1.53002 * 109.46856 * 69.87608 * 15 14 13 17 17 H 1.08999 * 109.38869 * 304.79660 * 16 15 14 18 18 C 1.52586 * 109.38731 * 184.99830 * 16 15 14 19 19 C 1.52575 * 110.72456 * 169.17215 * 18 16 15 20 20 C 1.53102 * 109.95374 * 70.67734 * 19 18 16 21 21 S 1.81739 * 108.84117 * 296.97150 * 20 19 18 22 22 C 1.53098 * 109.39057 * 64.50443 * 16 15 14 23 23 H 0.96999 * 120.00114 * 359.97438 * 1 2 3 24 24 H 1.09003 * 110.99086 * 37.80519 * 11 9 7 25 25 H 1.09003 * 111.02261 * 274.00839 * 11 9 7 26 26 H 1.08999 * 110.70740 * 205.96065 * 12 11 9 27 27 H 1.09003 * 110.85197 * 82.79477 * 12 11 9 28 28 H 1.09003 * 109.88635 * 262.87351 * 13 12 11 29 29 H 1.09007 * 109.88758 * 141.68653 * 13 12 11 30 30 H 1.08998 * 109.47280 * 309.87567 * 15 14 13 31 31 H 1.09000 * 109.46733 * 189.86866 * 15 14 13 32 32 H 1.09004 * 109.22563 * 289.49566 * 18 16 15 33 33 H 1.09001 * 109.22349 * 48.85412 * 18 16 15 34 34 H 1.09000 * 109.39151 * 190.82091 * 19 18 16 35 35 H 1.09004 * 109.39609 * 310.52727 * 19 18 16 36 36 H 1.09003 * 109.57550 * 177.16316 * 20 19 18 37 37 H 1.08997 * 109.57619 * 56.78199 * 20 19 18 38 38 H 1.08999 * 109.57329 * 302.97323 * 22 16 15 39 39 H 1.08992 * 109.57536 * 63.36893 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5882 -2.5556 0.8630 11 6 0.4419 -2.6548 -1.3122 12 6 0.2928 -4.1961 -1.4076 13 6 1.6341 -4.7105 -0.8437 14 7 2.1939 -3.6379 -0.0011 15 6 2.4416 -4.1170 1.3653 16 6 3.6101 -5.1047 1.3554 17 1 3.4002 -5.9063 0.6473 18 6 3.7861 -5.6951 2.7513 19 6 4.7577 -6.8711 2.7216 20 6 6.1812 -6.3666 2.4707 21 16 6.2454 -5.5808 0.8332 22 6 4.8880 -4.3761 0.9312 23 1 -0.4850 0.8400 0.0004 24 1 0.9989 -2.2630 -2.1634 25 1 -0.5322 -2.1726 -1.2304 26 1 0.1657 -4.5076 -2.4443 27 1 -0.5406 -4.5438 -0.7971 28 1 2.3186 -4.9349 -1.6618 29 1 1.4653 -5.6042 -0.2428 30 1 1.5486 -4.6144 1.7435 31 1 2.6863 -3.2713 2.0080 32 1 4.1735 -4.9262 3.4200 33 1 2.8195 -6.0373 3.1208 34 1 4.7223 -7.3940 3.6773 35 1 4.4712 -7.5573 1.9245 36 1 6.8766 -7.2055 2.5007 37 1 6.4509 -5.6388 3.2359 38 1 4.7383 -3.9144 -0.0448 39 1 5.1325 -3.6095 1.6664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:57 Heat of formation + Delta-G solvation = -32.195630 kcal Electronic energy + Delta-G solvation = -17665.137082 eV Core-core repulsion = 15118.016307 eV Total energy + Delta-G solvation = -2547.120775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05082 -37.84749 -34.74331 -33.69991 -31.12682 -30.06391 -28.22559 -26.58073 -25.90775 -22.97548 -22.00179 -21.26805 -20.49675 -18.49521 -17.62383 -16.99341 -16.46656 -16.12259 -15.86078 -15.38946 -14.80057 -14.52177 -14.24525 -14.20392 -13.88308 -13.68693 -13.51418 -12.98115 -12.90755 -12.70253 -12.48345 -12.30099 -12.27689 -12.05395 -11.89199 -11.78896 -11.51033 -11.43465 -11.05930 -10.95188 -10.55341 -10.47927 -8.92229 -8.63373 -8.11401 -6.19143 0.91406 1.39217 1.41771 1.53478 1.67451 2.42540 3.18263 3.34225 3.71039 3.89935 3.96978 4.01470 4.11451 4.20485 4.25935 4.38921 4.48336 4.60742 4.65531 4.70018 4.76696 4.84139 4.88970 4.90786 4.95266 5.01096 5.09867 5.17361 5.20648 5.26155 5.36538 5.43680 5.55675 5.65329 5.77303 6.22220 6.55020 6.63910 6.93205 7.48884 8.96669 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.006178 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.919590 B = 4531.354983 C = 5184.764703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.211 3.789 10 H -0.021 1.021 11 C -0.101 4.101 12 C -0.139 4.139 13 C 0.047 3.953 14 N -0.534 5.534 15 C 0.069 3.931 16 C -0.067 4.067 17 H 0.079 0.921 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.071 4.071 21 S -0.319 6.319 22 C -0.047 4.047 23 H 0.260 0.740 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -13.927 4.911 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.104 3.896 10 H -0.004 1.004 11 C -0.140 4.140 12 C -0.178 4.178 13 C -0.080 4.080 14 N -0.258 5.258 15 C -0.061 4.061 16 C -0.088 4.088 17 H 0.097 0.903 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.219 4.219 21 S -0.092 6.092 22 C -0.195 4.195 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.373 -13.858 3.862 16.646 hybrid contribution -1.494 1.468 1.165 2.397 sum 6.879 -12.390 5.028 15.037 Atomic orbital electron populations 1.70075 1.07086 1.27133 1.52101 1.25672 0.95639 1.02173 0.95255 0.85562 0.79021 0.79862 0.77534 1.19415 1.20690 1.20670 1.21332 0.93044 0.90859 1.49166 0.92987 1.19894 0.88596 0.88694 0.92369 1.00378 1.22409 0.99216 0.93961 0.98412 1.22814 0.97539 0.95960 1.01453 1.22785 0.94487 0.93542 0.97227 1.63496 1.45692 1.06443 1.10146 1.22159 0.96269 0.97094 0.90588 1.21250 0.92629 0.96783 0.98120 0.90274 1.21570 1.00939 0.98214 0.95418 1.21661 0.92011 0.97496 1.03887 1.23527 1.01409 1.02982 0.93947 1.86894 1.47145 1.49337 1.25802 1.23270 0.93626 0.97133 1.05516 0.93100 0.94186 0.93568 0.90159 0.92218 0.91155 0.92155 0.95355 0.93005 0.91918 0.90343 0.88441 0.90820 0.86295 0.89526 0.88826 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 12.27 21.45 0.26 -53.55 16 2 C 0.01 0.61 5.34 84.66 0.45 1.06 16 3 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.51 -28.22 8.82 25.60 0.23 -27.99 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.21 10.68 2.28 44.64 0.10 10.78 16 10 H -0.02 -1.21 7.81 -2.39 -0.02 -1.23 16 11 C -0.10 -4.79 5.86 31.98 0.19 -4.61 16 12 C -0.14 -5.09 6.94 31.78 0.22 -4.87 16 13 C 0.05 1.66 6.14 86.65 0.53 2.19 16 14 N -0.53 -22.08 4.18 -864.97 -3.61 -25.70 16 15 C 0.07 2.47 3.90 86.30 0.34 2.81 16 16 C -0.07 -1.88 2.01 -10.90 -0.02 -1.91 16 17 H 0.08 2.22 6.96 -2.39 -0.02 2.20 16 18 C -0.12 -2.66 4.92 30.32 0.15 -2.51 16 19 C -0.11 -1.90 5.75 30.49 0.18 -1.72 16 20 C -0.07 -1.31 6.45 72.02 0.46 -0.85 16 21 S -0.32 -8.58 22.33 -56.49 -1.26 -9.84 16 22 C -0.05 -1.45 5.65 72.01 0.41 -1.05 16 23 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.04 1.98 8.05 -2.39 -0.02 1.96 16 25 H 0.05 2.39 7.57 -2.39 -0.02 2.37 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 29 H 0.06 1.83 6.94 -2.38 -0.02 1.82 16 30 H 0.03 0.98 7.91 -2.39 -0.02 0.96 16 31 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.06 1.39 8.08 -2.38 -0.02 1.37 16 33 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.30 8.06 -2.39 -0.02 1.29 16 36 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 3.40 7.66 -2.39 -0.02 3.38 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -60.93 311.97 1.64 -59.29 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.99 Total: 11.91 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.23 Total: -28.66 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.35 Total: -79.25 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.26 Total: -9.84 kcal Total: -60.93 1.64 -59.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.097 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds