Wall clock time and date at job start Mon Mar 30 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47370 * 270.00121 * 3 2 1 5 5 H 1.48501 * 109.47255 * 30.00478 * 3 2 1 6 6 H 1.48504 * 109.46541 * 149.99994 * 3 2 1 7 7 C 1.37868 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00287 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.45696 * 57.58718 * 9 7 2 11 11 C 1.54375 * 110.41221 * 295.17681 * 9 7 2 12 12 C 1.54266 * 105.06073 * 217.36682 * 11 9 7 13 13 C 1.54385 * 105.05680 * 359.97438 * 12 11 9 14 14 N 1.48554 * 104.59657 * 23.85281 * 13 12 11 15 15 C 1.46902 * 110.99957 * 200.96003 * 14 13 12 16 16 C 1.53001 * 109.46842 * 279.96691 * 15 14 13 17 17 H 1.08999 * 109.39403 * 54.43989 * 16 15 14 18 18 C 1.52586 * 109.39109 * 294.63729 * 16 15 14 19 19 C 1.52578 * 110.69397 * 169.20032 * 18 16 15 20 20 C 1.53024 * 109.99669 * 70.70247 * 19 18 16 21 21 S 1.81739 * 108.81478 * 296.94062 * 20 19 18 22 22 C 1.53102 * 109.39021 * 174.14562 * 16 15 14 23 23 H 0.97004 * 119.99921 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.32347 * 336.26045 * 11 9 7 25 25 H 1.08998 * 110.32635 * 98.47020 * 11 9 7 26 26 H 1.09001 * 110.32679 * 118.89229 * 12 11 9 27 27 H 1.08996 * 110.32241 * 241.10724 * 12 11 9 28 28 H 1.08999 * 110.40951 * 265.07099 * 13 12 11 29 29 H 1.09004 * 110.40704 * 142.63345 * 13 12 11 30 30 H 1.08999 * 109.47323 * 159.96842 * 15 14 13 31 31 H 1.08994 * 109.47190 * 39.96442 * 15 14 13 32 32 H 1.08998 * 109.22433 * 289.50226 * 18 16 15 33 33 H 1.08998 * 109.22341 * 48.89642 * 18 16 15 34 34 H 1.09003 * 109.39361 * 190.80461 * 19 18 16 35 35 H 1.09002 * 109.38897 * 310.50339 * 19 18 16 36 36 H 1.09007 * 109.58435 * 177.13850 * 20 19 18 37 37 H 1.09002 * 109.69188 * 56.80728 * 20 19 18 38 38 H 1.08998 * 109.57416 * 302.98317 * 22 16 15 39 39 H 1.09000 * 109.57158 * 63.23309 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5861 -2.5552 -0.8624 11 6 0.4493 -2.6580 1.3091 12 6 0.5470 -4.1571 1.6596 13 6 1.3991 -4.7779 0.5318 14 7 2.1971 -3.6442 -0.0019 15 6 2.6752 -3.9308 -1.3610 16 6 3.9100 -4.8313 -1.2879 17 1 3.6748 -5.7212 -0.7040 18 6 5.0514 -4.0726 -0.6173 19 6 6.2050 -5.0152 -0.2876 20 6 6.9062 -5.4545 -1.5748 21 16 5.7282 -6.3913 -2.5935 22 6 4.3198 -5.2479 -2.7030 23 1 -0.4850 0.8401 0.0004 24 1 0.8936 -2.0544 2.1006 25 1 -0.5911 -2.3727 1.1531 26 1 1.0394 -4.2893 2.6231 27 1 -0.4453 -4.6076 1.6756 28 1 0.7571 -5.1906 -0.2464 29 1 2.0561 -5.5498 0.9328 30 1 2.9357 -2.9969 -1.8590 31 1 1.8900 -4.4358 -1.9235 32 1 5.4069 -3.2916 -1.2894 33 1 4.6870 -3.6157 0.3027 34 1 6.9198 -4.5014 0.3553 35 1 5.8186 -5.8921 0.2319 36 1 7.7596 -6.0864 -1.3287 37 1 7.2477 -4.5775 -2.1247 38 1 3.4832 -5.7449 -3.1941 39 1 4.6069 -4.3654 -3.2747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:59 Heat of formation + Delta-G solvation = -18.263801 kcal Electronic energy + Delta-G solvation = -17709.122538 eV Core-core repulsion = 15162.605892 eV Total energy + Delta-G solvation = -2546.516646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.41809 -36.49599 -32.85464 -32.32603 -29.98432 -28.18193 -26.96123 -24.89221 -24.11271 -21.79335 -20.50918 -19.57107 -19.21833 -16.56310 -16.40140 -15.18575 -14.82829 -14.66737 -14.49240 -14.06820 -13.52576 -13.32453 -13.11652 -12.76845 -12.47781 -12.18551 -11.93182 -11.36516 -11.19758 -11.11876 -11.03571 -10.80322 -10.70298 -10.65841 -10.25671 -10.13931 -9.95597 -9.78790 -9.58851 -9.41301 -8.94879 -8.44622 -7.62566 -7.39057 -6.03852 -4.04798 1.86576 2.59231 3.29200 3.36356 3.40028 4.40012 4.80977 4.83584 4.94499 5.04456 5.28577 5.33577 5.36187 5.40715 5.59234 5.70833 5.74480 5.78922 5.82476 5.94719 5.97870 6.12670 6.18841 6.30746 6.37821 6.41306 6.55252 6.65614 6.70746 6.78249 7.06087 7.13921 7.35332 7.56567 7.82216 8.05010 8.19748 8.50203 9.01019 9.59245 11.06228 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.006241 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.594943 B = 4485.037914 C = 5195.510797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.202 3.798 10 H 0.009 0.991 11 C -0.097 4.097 12 C -0.130 4.130 13 C 0.033 3.967 14 N -0.504 5.504 15 C 0.059 3.941 16 C -0.077 4.077 17 H 0.076 0.924 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.077 4.077 21 S -0.287 6.287 22 C -0.071 4.071 23 H 0.260 0.740 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.149 -9.832 -1.806 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.096 3.904 10 H 0.027 0.973 11 C -0.136 4.136 12 C -0.168 4.168 13 C -0.096 4.096 14 N -0.228 5.228 15 C -0.072 4.072 16 C -0.097 4.097 17 H 0.094 0.906 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.225 4.225 21 S -0.059 6.059 22 C -0.219 4.219 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.612 -10.627 -1.958 13.818 hybrid contribution -0.486 1.932 -0.115 1.995 sum 8.126 -8.695 -2.073 12.080 Atomic orbital electron populations 1.69972 1.05886 1.26558 1.50861 1.24946 0.94845 0.99063 0.95396 0.86571 0.79891 0.83414 0.77983 1.20855 1.21322 1.19841 1.20986 0.93266 0.89273 1.49968 0.91939 1.20184 0.88918 0.88194 0.93118 0.97324 1.22223 1.00311 0.91490 0.99547 1.22388 0.97841 0.98753 0.97795 1.23044 0.95006 0.94717 0.96810 1.65303 1.34772 1.03945 1.18789 1.22129 0.94470 0.98853 0.91699 1.21275 0.96150 0.99187 0.93109 0.90596 1.21480 0.93667 0.97265 1.03056 1.21734 0.98052 1.00550 0.95608 1.23430 0.98659 1.02052 0.98369 1.86655 1.18144 1.31536 1.69605 1.23528 0.97187 1.00262 1.00966 0.93050 0.92354 0.92472 0.92605 0.93254 0.95439 0.92048 0.90347 0.95750 0.92484 0.88662 0.91209 0.90986 0.88481 0.90109 0.88280 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 12.61 55.43 0.70 -24.59 16 2 C 0.06 1.60 5.34 -17.82 -0.10 1.51 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.50 -13.25 8.28 -34.44 -0.29 -13.54 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.20 4.93 2.12 -67.24 -0.14 4.79 16 10 H 0.01 0.24 7.99 -51.93 -0.42 -0.17 16 11 C -0.10 -2.24 5.75 -25.35 -0.15 -2.39 16 12 C -0.13 -2.44 7.00 -25.34 -0.18 -2.62 16 13 C 0.03 0.60 6.08 -2.18 -0.01 0.58 16 14 N -0.50 -10.28 4.25 -223.53 -0.95 -11.23 16 15 C 0.06 1.07 4.19 -3.82 -0.02 1.05 16 16 C -0.08 -1.14 2.13 -90.78 -0.19 -1.33 16 17 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 18 C -0.12 -1.71 4.91 -27.16 -0.13 -1.85 16 19 C -0.12 -1.46 5.74 -26.93 -0.15 -1.61 16 20 C -0.08 -0.87 6.45 37.17 0.24 -0.63 16 21 S -0.29 -3.75 22.33 -107.50 -2.40 -6.15 16 22 C -0.07 -0.94 5.73 37.21 0.21 -0.73 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.06 1.44 7.85 -51.93 -0.41 1.03 16 25 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.49 7.68 -51.93 -0.40 0.09 16 29 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 30 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 31 H 0.02 0.43 7.64 -51.93 -0.40 0.03 16 32 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.09 1.63 7.46 -51.93 -0.39 1.24 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -27.27 312.78 -10.83 -38.10 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.96 Total: -0.17 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.90 Total: -16.75 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.25 Total: -35.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.40 Total: -6.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.27 -10.83 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.835 kcal (2) G-P(sol) polarization free energy of solvation -27.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds