Wall clock time and date at job start Mon Mar 30 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47370 * 270.00121 * 3 2 1 5 5 H 1.48501 * 109.47255 * 30.00478 * 3 2 1 6 6 H 1.48504 * 109.46541 * 149.99994 * 3 2 1 7 7 C 1.37868 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00287 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.45696 * 57.58718 * 9 7 2 11 11 C 1.54375 * 110.41221 * 295.17681 * 9 7 2 12 12 C 1.54266 * 105.06073 * 217.36682 * 11 9 7 13 13 C 1.54385 * 105.05680 * 359.97438 * 12 11 9 14 14 N 1.48554 * 104.59657 * 23.85281 * 13 12 11 15 15 C 1.46902 * 110.99957 * 200.96003 * 14 13 12 16 16 C 1.53001 * 109.46842 * 279.96691 * 15 14 13 17 17 H 1.08999 * 109.39403 * 54.43989 * 16 15 14 18 18 C 1.52586 * 109.39109 * 294.63729 * 16 15 14 19 19 C 1.52578 * 110.69397 * 169.20032 * 18 16 15 20 20 C 1.53024 * 109.99669 * 70.70247 * 19 18 16 21 21 S 1.81739 * 108.81478 * 296.94062 * 20 19 18 22 22 C 1.53102 * 109.39021 * 174.14562 * 16 15 14 23 23 H 0.97004 * 119.99921 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.32347 * 336.26045 * 11 9 7 25 25 H 1.08998 * 110.32635 * 98.47020 * 11 9 7 26 26 H 1.09001 * 110.32679 * 118.89229 * 12 11 9 27 27 H 1.08996 * 110.32241 * 241.10724 * 12 11 9 28 28 H 1.08999 * 110.40951 * 265.07099 * 13 12 11 29 29 H 1.09004 * 110.40704 * 142.63345 * 13 12 11 30 30 H 1.08999 * 109.47323 * 159.96842 * 15 14 13 31 31 H 1.08994 * 109.47190 * 39.96442 * 15 14 13 32 32 H 1.08998 * 109.22433 * 289.50226 * 18 16 15 33 33 H 1.08998 * 109.22341 * 48.89642 * 18 16 15 34 34 H 1.09003 * 109.39361 * 190.80461 * 19 18 16 35 35 H 1.09002 * 109.38897 * 310.50339 * 19 18 16 36 36 H 1.09007 * 109.58435 * 177.13850 * 20 19 18 37 37 H 1.09002 * 109.69188 * 56.80728 * 20 19 18 38 38 H 1.08998 * 109.57416 * 302.98317 * 22 16 15 39 39 H 1.09000 * 109.57158 * 63.23309 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5861 -2.5552 -0.8624 11 6 0.4493 -2.6580 1.3091 12 6 0.5470 -4.1571 1.6596 13 6 1.3991 -4.7779 0.5318 14 7 2.1971 -3.6442 -0.0019 15 6 2.6752 -3.9308 -1.3610 16 6 3.9100 -4.8313 -1.2879 17 1 3.6748 -5.7212 -0.7040 18 6 5.0514 -4.0726 -0.6173 19 6 6.2050 -5.0152 -0.2876 20 6 6.9062 -5.4545 -1.5748 21 16 5.7282 -6.3913 -2.5935 22 6 4.3198 -5.2479 -2.7030 23 1 -0.4850 0.8401 0.0004 24 1 0.8936 -2.0544 2.1006 25 1 -0.5911 -2.3727 1.1531 26 1 1.0394 -4.2893 2.6231 27 1 -0.4453 -4.6076 1.6756 28 1 0.7571 -5.1906 -0.2464 29 1 2.0561 -5.5498 0.9328 30 1 2.9357 -2.9969 -1.8590 31 1 1.8900 -4.4358 -1.9235 32 1 5.4069 -3.2916 -1.2894 33 1 4.6870 -3.6157 0.3027 34 1 6.9198 -4.5014 0.3553 35 1 5.8186 -5.8921 0.2319 36 1 7.7596 -6.0864 -1.3287 37 1 7.2477 -4.5775 -2.1247 38 1 3.4832 -5.7449 -3.1941 39 1 4.6069 -4.3654 -3.2747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:59 Heat of formation + Delta-G solvation = -32.405918 kcal Electronic energy + Delta-G solvation = -17709.735787 eV Core-core repulsion = 15162.605892 eV Total energy + Delta-G solvation = -2547.129894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97105 -37.81553 -34.70956 -33.73959 -31.42006 -30.05710 -28.03464 -26.49770 -25.87559 -22.91391 -21.91539 -21.43383 -20.60991 -18.41443 -17.68098 -16.79287 -16.39665 -16.04128 -15.82853 -15.58463 -14.82956 -14.70458 -14.31837 -14.17424 -13.89881 -13.63294 -13.51916 -12.98410 -12.83182 -12.57189 -12.53415 -12.43004 -12.20952 -12.01489 -11.83366 -11.77248 -11.44282 -11.37346 -11.14748 -10.87659 -10.56816 -10.50400 -9.08490 -8.65301 -8.13288 -6.20655 0.86743 1.40164 1.41599 1.51887 1.58988 2.41970 3.17869 3.37892 3.71318 3.89539 3.97592 4.10348 4.12357 4.20320 4.29195 4.34978 4.47328 4.53985 4.65250 4.70506 4.71221 4.80355 4.86008 4.93201 4.95009 5.05328 5.16482 5.18609 5.27396 5.34979 5.42624 5.51579 5.56186 5.66673 5.74147 6.16115 6.45273 6.57740 6.91514 7.47087 8.96197 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.006241 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.594943 B = 4485.037914 C = 5195.510797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.202 3.798 10 H -0.028 1.028 11 C -0.092 4.092 12 C -0.120 4.120 13 C 0.034 3.966 14 N -0.507 5.507 15 C 0.062 3.938 16 C -0.063 4.063 17 H 0.078 0.922 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.071 4.071 21 S -0.297 6.297 22 C -0.067 4.067 23 H 0.260 0.740 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -11.061 -1.543 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.095 3.905 10 H -0.010 1.010 11 C -0.131 4.131 12 C -0.158 4.158 13 C -0.094 4.094 14 N -0.231 5.231 15 C -0.068 4.068 16 C -0.083 4.083 17 H 0.096 0.904 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.219 4.219 21 S -0.070 6.070 22 C -0.216 4.216 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.300 -11.875 -1.698 15.811 hybrid contribution -1.001 2.294 -0.212 2.512 sum 9.299 -9.581 -1.910 13.488 Atomic orbital electron populations 1.70091 1.07205 1.27240 1.51849 1.25697 0.95618 1.02295 0.95188 0.85601 0.78769 0.79455 0.78103 1.20319 1.21032 1.19236 1.21240 0.93061 0.90679 1.49525 0.92637 1.19985 0.89060 0.89249 0.92201 1.01050 1.22024 0.98308 0.94607 0.98208 1.22347 0.99505 0.95214 0.98767 1.23133 0.95289 0.94326 0.96640 1.65263 1.33863 1.03736 1.20261 1.22122 0.95961 0.98417 0.90329 1.21126 0.94586 0.98240 0.94377 0.90356 1.21410 0.94600 0.97692 1.01502 1.21654 0.97267 0.99937 0.96311 1.23496 0.98552 1.02419 0.97424 1.86730 1.18246 1.31717 1.70278 1.23427 0.97902 1.00546 0.99714 0.93101 0.94570 0.94754 0.90946 0.91180 0.94927 0.89329 0.92855 0.95609 0.93159 0.91298 0.89719 0.90871 0.86290 0.89572 0.87678 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 12.61 21.44 0.27 -53.49 16 2 C 0.01 0.59 5.34 84.65 0.45 1.04 16 3 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.51 -27.80 8.28 25.60 0.21 -27.59 16 8 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.20 10.18 2.12 44.32 0.09 10.27 16 10 H -0.03 -1.60 7.99 -2.39 -0.02 -1.61 16 11 C -0.09 -4.37 5.75 31.49 0.18 -4.19 16 12 C -0.12 -4.36 7.00 31.49 0.22 -4.14 16 13 C 0.03 1.19 6.08 86.45 0.53 1.71 16 14 N -0.51 -20.71 4.25 -861.10 -3.66 -24.37 16 15 C 0.06 2.25 4.19 86.30 0.36 2.62 16 16 C -0.06 -1.79 2.13 -10.90 -0.02 -1.81 16 17 H 0.08 2.22 7.48 -2.39 -0.02 2.20 16 18 C -0.11 -3.22 4.91 30.32 0.15 -3.07 16 19 C -0.11 -2.44 5.74 30.46 0.17 -2.26 16 20 C -0.07 -1.39 6.45 71.99 0.46 -0.93 16 21 S -0.30 -7.07 22.33 -56.49 -1.26 -8.33 16 22 C -0.07 -1.69 5.73 72.02 0.41 -1.28 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 24 H 0.04 1.82 7.85 -2.39 -0.02 1.80 16 25 H 0.03 1.73 8.05 -2.39 -0.02 1.71 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.03 1.11 7.68 -2.39 -0.02 1.09 16 29 H 0.09 2.64 7.88 -2.39 -0.02 2.62 16 30 H 0.05 2.18 7.69 -2.39 -0.02 2.16 16 31 H 0.03 0.91 7.64 -2.39 -0.02 0.90 16 32 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.07 2.32 7.46 -2.39 -0.02 2.30 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.59 8.05 -2.39 -0.02 1.58 16 36 H 0.12 1.87 8.14 -2.38 -0.02 1.86 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -59.57 312.78 1.58 -57.98 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.99 Total: 11.96 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 3.23 Total: -29.63 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -3.39 Total: -77.86 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.26 Total: -8.33 kcal Total: -59.57 1.58 -57.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.578 kcal (2) G-P(sol) polarization free energy of solvation -59.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds