Wall clock time and date at job start Mon Mar 30 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47379 * 269.99958 * 3 2 1 5 5 H 1.48504 * 109.47258 * 30.00176 * 3 2 1 6 6 H 1.48504 * 109.46866 * 150.00082 * 3 2 1 7 7 C 1.37876 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00532 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99154 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.42256 * 302.31064 * 9 7 2 11 11 C 1.54902 * 110.37462 * 64.62923 * 9 7 2 12 12 C 1.55147 * 101.65401 * 155.89515 * 11 9 7 13 13 C 1.54318 * 103.01716 * 324.34545 * 12 11 9 14 14 N 1.47447 * 107.23562 * 22.28175 * 13 12 11 15 15 C 1.46902 * 110.99738 * 123.25503 * 14 13 12 16 16 C 1.53000 * 109.46865 * 75.59576 * 15 14 13 17 17 H 1.08993 * 109.39516 * 305.56537 * 16 15 14 18 18 C 1.52586 * 109.38731 * 65.36509 * 16 15 14 19 19 C 1.52590 * 110.68931 * 190.74596 * 18 16 15 20 20 C 1.53116 * 109.94367 * 289.26024 * 19 18 16 21 21 S 1.81747 * 108.80771 * 63.08803 * 20 19 18 22 22 C 1.53097 * 109.31014 * 185.80543 * 16 15 14 23 23 H 0.97003 * 119.99879 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.99488 * 37.80625 * 11 9 7 25 25 H 1.08999 * 111.02174 * 273.99990 * 11 9 7 26 26 H 1.08995 * 110.70534 * 205.96126 * 12 11 9 27 27 H 1.09000 * 110.70705 * 82.72578 * 12 11 9 28 28 H 1.09000 * 109.88758 * 262.87292 * 13 12 11 29 29 H 1.09000 * 109.88877 * 141.69172 * 13 12 11 30 30 H 1.08993 * 109.47440 * 315.59920 * 15 14 13 31 31 H 1.09005 * 109.46833 * 195.59207 * 15 14 13 32 32 H 1.09002 * 109.22678 * 311.04131 * 18 16 15 33 33 H 1.08998 * 109.23070 * 70.44455 * 18 16 15 34 34 H 1.08999 * 109.39131 * 49.44911 * 19 18 16 35 35 H 1.08998 * 109.38475 * 169.15613 * 19 18 16 36 36 H 1.08999 * 109.61534 * 303.28123 * 20 19 18 37 37 H 1.09003 * 109.68161 * 182.93543 * 20 19 18 38 38 H 1.08997 * 109.57687 * 296.68850 * 22 16 15 39 39 H 1.09008 * 109.57055 * 56.94292 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5556 0.8630 11 6 0.4420 -2.6547 -1.3123 12 6 0.2929 -4.1960 -1.4076 13 6 1.6341 -4.7105 -0.8438 14 7 2.1940 -3.6378 -0.0012 15 6 2.4417 -4.1169 1.3653 16 6 3.6966 -4.9921 1.3791 17 1 3.5905 -5.7886 0.6427 18 6 4.9129 -4.1391 1.0311 19 6 6.1333 -5.0189 0.7761 20 6 6.6165 -5.6357 2.0916 21 16 5.3098 -6.7153 2.7475 22 6 3.8701 -5.6063 2.7707 23 1 -0.4850 0.8401 0.0004 24 1 0.9989 -2.2630 -2.1634 25 1 -0.5322 -2.1725 -1.2305 26 1 0.1658 -4.5075 -2.4444 27 1 -0.5402 -4.5413 -0.7955 28 1 2.3186 -4.9348 -1.6619 29 1 1.4654 -5.6041 -0.2430 30 1 1.5873 -4.7016 1.7058 31 1 2.5861 -3.2642 2.0287 32 1 4.6978 -3.5556 0.1359 33 1 5.1251 -3.4620 1.8584 34 1 5.8672 -5.8137 0.0793 35 1 6.9316 -4.4143 0.3457 36 1 6.8310 -4.8442 2.8098 37 1 7.5185 -6.2211 1.9131 38 1 4.0309 -4.8143 3.5020 39 1 2.9759 -6.1711 3.0347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:01 Heat of formation + Delta-G solvation = -17.539507 kcal Electronic energy + Delta-G solvation = -17703.526300 eV Core-core repulsion = 15157.041061 eV Total energy + Delta-G solvation = -2546.485238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.49062 -36.48485 -32.86360 -32.27620 -29.90145 -28.22100 -26.95137 -24.93647 -24.11375 -21.83401 -20.56722 -19.60369 -19.07772 -16.56673 -16.41479 -15.40061 -14.82255 -14.66184 -14.29827 -14.20742 -13.57697 -13.26130 -12.93420 -12.72987 -12.44051 -12.21787 -12.02180 -11.49701 -11.20948 -11.10687 -11.01490 -10.79683 -10.69086 -10.55498 -10.27732 -10.15115 -9.97336 -9.78935 -9.69507 -9.41458 -8.99987 -8.40528 -7.62993 -7.23201 -6.01391 -4.02110 1.85999 2.58765 3.31032 3.37681 3.40959 4.41208 4.81101 4.83217 4.94274 5.04114 5.29808 5.33470 5.37067 5.40289 5.57671 5.64081 5.71448 5.78514 5.83649 5.93794 5.95914 6.12008 6.18279 6.30299 6.35776 6.39698 6.56871 6.60445 6.69897 6.78377 7.03367 7.09488 7.45101 7.53590 7.87226 8.13227 8.25382 8.53650 9.04262 9.61900 11.07985 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.006152 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.913758 B = 4550.543423 C = 5284.871340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.492 4.492 8 H 0.063 0.937 9 C 0.210 3.790 10 H 0.012 0.988 11 C -0.103 4.103 12 C -0.152 4.152 13 C 0.046 3.954 14 N -0.522 5.522 15 C 0.066 3.934 16 C -0.078 4.078 17 H 0.077 0.923 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.077 4.077 21 S -0.286 6.286 22 C -0.071 4.071 23 H 0.259 0.741 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 -10.179 2.392 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.531 4.531 8 H 0.081 0.919 9 C 0.104 3.896 10 H 0.030 0.970 11 C -0.142 4.142 12 C -0.190 4.190 13 C -0.082 4.082 14 N -0.246 5.246 15 C -0.065 4.065 16 C -0.099 4.099 17 H 0.095 0.905 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.225 4.225 21 S -0.059 6.059 22 C -0.220 4.220 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.068 -10.981 2.543 13.861 hybrid contribution -0.498 1.866 0.050 1.932 sum 7.570 -9.115 2.593 12.129 Atomic orbital electron populations 1.69957 1.05887 1.26511 1.51207 1.24951 0.94852 0.99054 0.95505 0.86558 0.79762 0.83375 0.78053 1.20756 1.21444 1.19956 1.21036 0.93369 0.89203 1.49476 0.91905 1.20120 0.88526 0.87821 0.93150 0.97018 1.22619 1.01195 0.90598 0.99818 1.22884 0.96833 0.99778 0.99506 1.22740 0.94822 0.93601 0.97087 1.63551 1.46644 1.06220 1.08181 1.22143 0.94272 0.97596 0.92512 1.21316 0.96425 0.98016 0.94105 0.90512 1.21481 0.92448 0.97613 1.03920 1.21752 0.98714 0.99913 0.95571 1.23448 0.98083 1.00731 1.00238 1.86655 1.08686 1.24693 1.85901 1.23529 0.97082 1.00237 1.01111 0.93091 0.92543 0.91041 0.92698 0.93032 0.92131 0.94538 0.95925 0.90719 0.88597 0.92498 0.90976 0.91194 0.90117 0.88467 0.89913 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 12.27 55.43 0.68 -24.65 16 2 C 0.06 1.56 5.34 -17.82 -0.10 1.47 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -13.20 8.82 -34.44 -0.30 -13.50 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.21 5.11 2.23 -67.34 -0.15 4.96 16 10 H 0.01 0.32 7.81 -51.93 -0.41 -0.08 16 11 C -0.10 -2.39 5.86 -24.59 -0.14 -2.53 16 12 C -0.15 -2.85 6.94 -24.90 -0.17 -3.02 16 13 C 0.05 0.83 6.22 -2.83 -0.02 0.81 16 14 N -0.52 -10.63 4.04 -224.75 -0.91 -11.54 16 15 C 0.07 1.17 3.96 -3.82 -0.02 1.15 16 16 C -0.08 -1.15 2.09 -90.78 -0.19 -1.34 16 17 H 0.08 1.17 7.37 -51.93 -0.38 0.79 16 18 C -0.12 -1.71 4.91 -27.15 -0.13 -1.85 16 19 C -0.12 -1.46 5.75 -26.88 -0.15 -1.61 16 20 C -0.08 -0.86 6.46 37.22 0.24 -0.62 16 21 S -0.29 -3.73 22.33 -107.50 -2.40 -6.13 16 22 C -0.07 -0.93 5.73 37.21 0.21 -0.72 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 25 H 0.07 1.78 7.57 -51.93 -0.39 1.39 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.61 7.20 -51.93 -0.37 0.23 16 30 H 0.02 0.40 7.78 -51.93 -0.40 -0.01 16 31 H 0.07 1.45 7.99 -51.93 -0.42 1.04 16 32 H 0.10 1.64 7.46 -51.93 -0.39 1.26 16 33 H 0.06 0.84 8.08 -51.93 -0.42 0.43 16 34 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -27.25 312.42 -10.81 -38.05 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.94 Total: 0.21 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.92 Total: -16.80 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.23 Total: -36.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.40 Total: -6.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.25 -10.81 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.515 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds