Wall clock time and date at job start Mon Mar 30 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47379 * 269.99958 * 3 2 1 5 5 H 1.48504 * 109.47258 * 30.00176 * 3 2 1 6 6 H 1.48504 * 109.46866 * 150.00082 * 3 2 1 7 7 C 1.37876 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00532 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99154 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.42256 * 302.31064 * 9 7 2 11 11 C 1.54902 * 110.37462 * 64.62923 * 9 7 2 12 12 C 1.55147 * 101.65401 * 155.89515 * 11 9 7 13 13 C 1.54318 * 103.01716 * 324.34545 * 12 11 9 14 14 N 1.47447 * 107.23562 * 22.28175 * 13 12 11 15 15 C 1.46902 * 110.99738 * 123.25503 * 14 13 12 16 16 C 1.53000 * 109.46865 * 75.59576 * 15 14 13 17 17 H 1.08993 * 109.39516 * 305.56537 * 16 15 14 18 18 C 1.52586 * 109.38731 * 65.36509 * 16 15 14 19 19 C 1.52590 * 110.68931 * 190.74596 * 18 16 15 20 20 C 1.53116 * 109.94367 * 289.26024 * 19 18 16 21 21 S 1.81747 * 108.80771 * 63.08803 * 20 19 18 22 22 C 1.53097 * 109.31014 * 185.80543 * 16 15 14 23 23 H 0.97003 * 119.99879 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.99488 * 37.80625 * 11 9 7 25 25 H 1.08999 * 111.02174 * 273.99990 * 11 9 7 26 26 H 1.08995 * 110.70534 * 205.96126 * 12 11 9 27 27 H 1.09000 * 110.70705 * 82.72578 * 12 11 9 28 28 H 1.09000 * 109.88758 * 262.87292 * 13 12 11 29 29 H 1.09000 * 109.88877 * 141.69172 * 13 12 11 30 30 H 1.08993 * 109.47440 * 315.59920 * 15 14 13 31 31 H 1.09005 * 109.46833 * 195.59207 * 15 14 13 32 32 H 1.09002 * 109.22678 * 311.04131 * 18 16 15 33 33 H 1.08998 * 109.23070 * 70.44455 * 18 16 15 34 34 H 1.08999 * 109.39131 * 49.44911 * 19 18 16 35 35 H 1.08998 * 109.38475 * 169.15613 * 19 18 16 36 36 H 1.08999 * 109.61534 * 303.28123 * 20 19 18 37 37 H 1.09003 * 109.68161 * 182.93543 * 20 19 18 38 38 H 1.08997 * 109.57687 * 296.68850 * 22 16 15 39 39 H 1.09008 * 109.57055 * 56.94292 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5556 0.8630 11 6 0.4420 -2.6547 -1.3123 12 6 0.2929 -4.1960 -1.4076 13 6 1.6341 -4.7105 -0.8438 14 7 2.1940 -3.6378 -0.0012 15 6 2.4417 -4.1169 1.3653 16 6 3.6966 -4.9921 1.3791 17 1 3.5905 -5.7886 0.6427 18 6 4.9129 -4.1391 1.0311 19 6 6.1333 -5.0189 0.7761 20 6 6.6165 -5.6357 2.0916 21 16 5.3098 -6.7153 2.7475 22 6 3.8701 -5.6063 2.7707 23 1 -0.4850 0.8401 0.0004 24 1 0.9989 -2.2630 -2.1634 25 1 -0.5322 -2.1725 -1.2305 26 1 0.1658 -4.5075 -2.4444 27 1 -0.5402 -4.5413 -0.7955 28 1 2.3186 -4.9348 -1.6619 29 1 1.4654 -5.6041 -0.2430 30 1 1.5873 -4.7016 1.7058 31 1 2.5861 -3.2642 2.0287 32 1 4.6978 -3.5556 0.1359 33 1 5.1251 -3.4620 1.8584 34 1 5.8672 -5.8137 0.0793 35 1 6.9316 -4.4143 0.3457 36 1 6.8310 -4.8442 2.8098 37 1 7.5185 -6.2211 1.9131 38 1 4.0309 -4.8143 3.5020 39 1 2.9759 -6.1711 3.0347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:00 Heat of formation + Delta-G solvation = -31.469329 kcal Electronic energy + Delta-G solvation = -17704.130342 eV Core-core repulsion = 15157.041061 eV Total energy + Delta-G solvation = -2547.089281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03451 -37.79867 -34.71622 -33.68083 -31.34113 -30.08379 -28.02090 -26.56060 -25.84763 -22.96349 -21.99201 -21.41587 -20.47290 -18.44684 -17.68817 -16.88264 -16.46876 -16.03046 -15.80430 -15.55243 -14.77573 -14.45152 -14.32817 -14.23654 -13.88760 -13.63791 -13.54628 -13.02411 -12.94931 -12.67771 -12.44835 -12.29169 -12.20943 -12.00202 -11.85619 -11.74740 -11.52609 -11.37960 -11.18064 -10.94178 -10.56389 -10.46409 -8.90810 -8.65241 -8.10245 -6.18122 0.86737 1.41633 1.42456 1.52481 1.59017 2.43266 3.19461 3.37873 3.71502 3.89152 3.97287 4.06711 4.11330 4.19755 4.27325 4.36280 4.46510 4.54087 4.63508 4.69984 4.74612 4.82039 4.84960 4.90116 4.94083 5.00743 5.15576 5.17494 5.23981 5.38585 5.43865 5.53717 5.56869 5.65699 5.78291 6.22963 6.55196 6.64545 6.94035 7.49801 8.97672 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.006152 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.913758 B = 4550.543423 C = 5284.871340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.211 3.789 10 H -0.024 1.024 11 C -0.101 4.101 12 C -0.140 4.140 13 C 0.047 3.953 14 N -0.528 5.528 15 C 0.068 3.932 16 C -0.064 4.064 17 H 0.079 0.921 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.071 4.071 21 S -0.297 6.297 22 C -0.067 4.067 23 H 0.260 0.740 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 -11.414 2.232 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.104 3.896 10 H -0.006 1.006 11 C -0.140 4.140 12 C -0.178 4.178 13 C -0.081 4.081 14 N -0.252 5.252 15 C -0.062 4.062 16 C -0.085 4.085 17 H 0.097 0.903 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.219 4.219 21 S -0.070 6.070 22 C -0.216 4.216 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.620 -12.236 2.384 15.747 hybrid contribution -0.970 2.234 0.113 2.438 sum 8.651 -10.002 2.497 13.458 Atomic orbital electron populations 1.70077 1.07156 1.27171 1.52096 1.25690 0.95627 1.02232 0.95289 0.85600 0.78660 0.79469 0.78162 1.20230 1.21146 1.19374 1.21300 0.93115 0.90729 1.49158 0.92747 1.19905 0.88607 0.88777 0.92293 1.00598 1.22411 0.99205 0.93915 0.98454 1.22821 0.97540 0.96016 1.01446 1.22819 0.94543 0.93426 0.97340 1.63472 1.45510 1.06332 1.09909 1.22140 0.96091 0.97201 0.90771 1.21166 0.94734 0.97255 0.95332 0.90316 1.21409 0.93745 0.97774 1.02279 1.21672 0.97761 0.99562 0.96190 1.23509 0.98016 1.00758 0.99590 1.86730 1.08998 1.25092 1.86167 1.23430 0.97936 1.00399 0.99802 0.93145 0.94045 0.93664 0.90058 0.92422 0.90782 0.92404 0.95535 0.93176 0.91357 0.93174 0.90906 0.89775 0.89579 0.86301 0.89915 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.67 12.27 21.45 0.26 -53.41 16 2 C 0.01 0.55 5.34 84.65 0.45 1.00 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.50 -27.78 8.82 25.60 0.23 -27.56 16 8 H 0.05 3.02 7.81 -2.92 -0.02 2.99 16 9 C 0.21 10.59 2.23 44.64 0.10 10.69 16 10 H -0.02 -1.33 7.81 -2.39 -0.02 -1.35 16 11 C -0.10 -4.74 5.86 31.98 0.19 -4.56 16 12 C -0.14 -5.07 6.94 31.78 0.22 -4.85 16 13 C 0.05 1.61 6.22 86.65 0.54 2.14 16 14 N -0.53 -21.55 4.04 -864.96 -3.49 -25.04 16 15 C 0.07 2.44 3.96 86.30 0.34 2.79 16 16 C -0.06 -1.82 2.09 -10.90 -0.02 -1.85 16 17 H 0.08 2.23 7.37 -2.39 -0.02 2.21 16 18 C -0.11 -3.24 4.91 30.32 0.15 -3.09 16 19 C -0.11 -2.46 5.75 30.50 0.18 -2.29 16 20 C -0.07 -1.39 6.46 72.02 0.46 -0.93 16 21 S -0.30 -7.04 22.33 -56.49 -1.26 -8.30 16 22 C -0.07 -1.66 5.73 72.01 0.41 -1.25 16 23 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 24 H 0.04 2.03 8.05 -2.39 -0.02 2.01 16 25 H 0.04 2.33 7.57 -2.39 -0.02 2.31 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 1.76 7.20 -2.39 -0.02 1.75 16 30 H 0.03 0.92 7.78 -2.39 -0.02 0.90 16 31 H 0.05 2.01 7.99 -2.38 -0.02 1.99 16 32 H 0.07 2.33 7.46 -2.39 -0.02 2.31 16 33 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -59.38 312.42 1.77 -57.61 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.99 Total: 12.91 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.25 Total: -29.75 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -3.23 Total: -78.45 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -7.04 SS G_CDS: -1.26 Total: -8.30 kcal Total: -59.38 1.77 -57.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.142 kcal (2) G-P(sol) polarization free energy of solvation -59.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds