Wall clock time and date at job start Mon Mar 30 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47217 * 300.00238 * 3 2 1 6 6 H 1.48506 * 109.46931 * 60.00106 * 3 2 1 7 7 C 1.37881 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00101 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.87144 * 62.39573 * 9 7 2 11 11 C 1.55134 * 110.99300 * 298.55072 * 9 7 2 12 12 C 1.54318 * 103.01877 * 206.25000 * 11 9 7 13 13 N 1.47444 * 107.23247 * 22.29040 * 12 11 9 14 14 C 1.46895 * 111.00352 * 123.25584 * 13 12 11 15 15 C 1.53002 * 109.47308 * 69.87331 * 14 13 12 16 16 H 1.09003 * 109.56830 * 300.25692 * 15 14 13 17 17 C 1.53095 * 109.57327 * 179.97438 * 15 14 13 18 18 C 1.52586 * 109.95323 * 177.03566 * 17 15 14 19 19 C 1.52575 * 110.72456 * 70.67337 * 18 17 15 20 20 C 1.53096 * 109.96185 * 289.32289 * 19 18 17 21 21 S 1.81743 * 109.68229 * 60.57628 * 15 14 13 22 22 C 1.47845 * 108.56651 * 0.97803 * 13 12 11 23 23 H 0.96999 * 120.00173 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.70817 * 87.87001 * 11 9 7 25 25 H 1.08996 * 110.85776 * 324.70779 * 11 9 7 26 26 H 1.08992 * 109.89089 * 262.87493 * 12 11 9 27 27 H 1.09003 * 109.88622 * 141.68762 * 12 11 9 28 28 H 1.08995 * 109.47216 * 309.86952 * 14 13 12 29 29 H 1.09008 * 109.46814 * 189.87219 * 14 13 12 30 30 H 1.09000 * 109.39323 * 56.89069 * 17 15 14 31 31 H 1.08995 * 109.39471 * 297.18362 * 17 15 14 32 32 H 1.09004 * 109.22563 * 190.99688 * 18 17 15 33 33 H 1.09001 * 109.22349 * 310.35535 * 18 17 15 34 34 H 1.09002 * 109.38965 * 49.47726 * 19 18 17 35 35 H 1.09004 * 109.38998 * 169.17578 * 19 18 17 36 36 H 1.09004 * 109.57375 * 303.22188 * 20 19 18 37 37 H 1.08999 * 109.58185 * 182.83147 * 20 19 18 38 38 H 1.09002 * 110.36633 * 94.73933 * 22 13 12 39 39 H 1.09000 * 110.37713 * 217.07804 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6478 -2.5993 -0.9029 11 6 0.3742 -2.6347 1.2720 12 6 0.2540 -4.1628 1.4503 13 7 1.3923 -4.7761 0.7416 14 6 2.1865 -5.6156 1.6484 15 6 1.3838 -6.8633 2.0226 16 1 0.4574 -6.5673 2.5148 17 6 2.2098 -7.7403 2.9673 18 6 1.3899 -8.9506 3.4044 19 6 1.2026 -9.9235 2.2441 20 6 0.2489 -9.3235 1.2076 21 16 0.9995 -7.8162 0.5236 22 6 2.2186 -3.6985 0.1570 23 1 -0.4850 0.8400 0.0004 24 1 -0.6069 -2.1869 1.1136 25 1 0.8675 -2.1838 2.1330 26 1 -0.6837 -4.5138 1.0196 27 1 0.2962 -4.4170 2.5094 28 1 2.4239 -5.0521 2.5507 29 1 3.1104 -5.9132 1.1523 30 1 2.4937 -7.1595 3.8449 31 1 3.1091 -8.0791 2.4530 32 1 1.9061 -9.4586 4.2191 33 1 0.4130 -8.6154 3.7530 34 1 2.1677 -10.1197 1.7770 35 1 0.7871 -10.8587 2.6194 36 1 -0.6995 -9.0756 1.6844 37 1 0.0800 -10.0432 0.4067 38 1 3.0366 -3.4404 0.8296 39 1 2.6071 -4.0030 -0.8149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260277196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:30 Heat of formation + Delta-G solvation = -17.705157 kcal Electronic energy + Delta-G solvation = -17238.636339 eV Core-core repulsion = 14692.143917 eV Total energy + Delta-G solvation = -2546.492421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.33701 -36.83143 -33.67301 -32.13841 -29.87241 -28.19210 -27.53504 -24.82632 -23.63026 -21.80187 -20.82545 -19.70229 -19.44755 -16.74557 -16.39350 -15.37957 -15.14293 -14.83620 -14.34779 -14.29994 -13.77602 -13.51988 -13.01670 -12.76010 -12.45814 -12.15573 -11.95764 -11.79524 -11.39897 -11.22293 -11.06338 -11.00455 -10.84234 -10.69024 -10.50174 -10.35818 -10.06858 -9.57571 -9.42809 -9.17595 -8.80356 -8.38120 -7.59417 -7.30196 -6.00783 -4.04142 1.93396 2.78939 3.29684 3.37821 3.41622 4.36692 4.46647 4.61532 4.63945 4.84938 5.04356 5.11832 5.18954 5.33028 5.39232 5.49113 5.59535 5.67323 5.72076 5.79933 5.83406 5.88926 5.90336 5.99968 6.12863 6.24054 6.30634 6.53239 6.58447 6.88884 7.17823 7.22319 7.67721 7.73695 7.79387 7.91260 8.04952 8.44621 8.98215 9.60113 11.08800 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.053265 B = 0.004321 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.543674 B = 6477.991014 C = 6570.868224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.037 0.963 11 C -0.116 4.116 12 C 0.039 3.961 13 N -0.525 5.525 14 C 0.070 3.930 15 C -0.045 4.045 16 H 0.084 0.916 17 C -0.118 4.118 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.103 4.103 21 S -0.214 6.214 22 C 0.048 3.952 23 H 0.259 0.741 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.034 0.966 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -17.367 6.669 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.055 0.945 11 C -0.155 4.155 12 C -0.088 4.088 13 N -0.249 5.249 14 C -0.060 4.060 15 C -0.175 4.175 16 H 0.102 0.898 17 C -0.158 4.158 18 C -0.165 4.165 19 C -0.159 4.159 20 C -0.252 4.252 21 S 0.013 5.987 22 C -0.079 4.079 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.595 -17.296 5.186 18.127 hybrid contribution 0.409 1.146 2.037 2.373 sum 2.004 -16.150 7.223 17.805 Atomic orbital electron populations 1.69976 1.05883 1.26334 1.50407 1.24965 0.94829 0.99006 0.95017 0.86570 0.80161 0.83920 0.77549 1.19804 1.20982 1.21126 1.21092 0.92811 0.90367 1.51014 0.92586 1.19720 0.92156 0.91035 0.94087 0.94482 1.22671 1.02181 0.90836 0.99814 1.22927 0.94284 0.96723 0.94890 1.63610 1.08950 1.21462 1.30844 1.22011 0.96040 0.92076 0.95853 1.23319 1.01705 0.96974 0.95474 0.89791 1.21789 0.98874 0.95977 0.99144 1.21507 1.00679 0.96222 0.98079 1.21706 1.00019 0.98312 0.95823 1.23517 1.00925 0.98839 1.01891 1.87384 1.80448 1.16580 1.14284 1.23158 0.95986 0.91195 0.97590 0.93120 0.90908 0.93588 0.91807 0.94948 0.93914 0.90673 0.91081 0.90626 0.91366 0.91931 0.90788 0.91501 0.90418 0.88300 0.94760 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 12.12 55.43 0.67 -24.94 16 2 C 0.06 1.77 5.34 -17.82 -0.10 1.68 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.22 8.55 -34.44 -0.29 -14.52 16 8 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 9 C 0.05 1.25 2.96 -89.64 -0.27 0.98 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 11 C -0.12 -2.75 5.64 -24.91 -0.14 -2.89 16 12 C 0.04 0.78 6.20 -2.84 -0.02 0.76 16 13 N -0.52 -10.14 4.73 -231.25 -1.09 -11.23 16 14 C 0.07 1.11 3.99 -3.83 -0.02 1.10 16 15 C -0.05 -0.61 2.50 -26.68 -0.07 -0.68 16 16 H 0.08 1.19 7.15 -51.93 -0.37 0.82 16 17 C -0.12 -1.25 5.04 -26.89 -0.14 -1.39 16 18 C -0.13 -1.15 5.61 -27.16 -0.15 -1.30 16 19 C -0.12 -1.05 5.75 -26.90 -0.15 -1.21 16 20 C -0.10 -1.08 6.46 37.21 0.24 -0.84 16 21 S -0.21 -3.07 21.32 -107.50 -2.29 -5.36 16 22 C 0.05 1.03 6.13 -2.30 -0.01 1.02 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.07 1.86 7.54 -51.93 -0.39 1.47 16 25 H 0.05 1.12 8.04 -51.93 -0.42 0.71 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.58 6.92 -51.93 -0.36 0.22 16 28 H 0.04 0.68 7.96 -51.93 -0.41 0.26 16 29 H 0.07 1.17 8.07 -51.92 -0.42 0.75 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.74 7.70 -51.93 -0.40 0.34 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -28.56 311.98 -11.10 -39.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.95 Total: -1.87 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.11 Total: -17.29 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.42 Total: -36.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.29 Total: -5.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.56 -11.10 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.955 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds