Wall clock time and date at job start Mon Mar 30 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47217 * 300.00238 * 3 2 1 6 6 H 1.48506 * 109.46931 * 60.00106 * 3 2 1 7 7 C 1.37881 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00101 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.87144 * 62.39573 * 9 7 2 11 11 C 1.55134 * 110.99300 * 298.55072 * 9 7 2 12 12 C 1.54318 * 103.01877 * 206.25000 * 11 9 7 13 13 N 1.47444 * 107.23247 * 22.29040 * 12 11 9 14 14 C 1.46895 * 111.00352 * 123.25584 * 13 12 11 15 15 C 1.53002 * 109.47308 * 69.87331 * 14 13 12 16 16 H 1.09003 * 109.56830 * 300.25692 * 15 14 13 17 17 C 1.53095 * 109.57327 * 179.97438 * 15 14 13 18 18 C 1.52586 * 109.95323 * 177.03566 * 17 15 14 19 19 C 1.52575 * 110.72456 * 70.67337 * 18 17 15 20 20 C 1.53096 * 109.96185 * 289.32289 * 19 18 17 21 21 S 1.81743 * 109.68229 * 60.57628 * 15 14 13 22 22 C 1.47845 * 108.56651 * 0.97803 * 13 12 11 23 23 H 0.96999 * 120.00173 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.70817 * 87.87001 * 11 9 7 25 25 H 1.08996 * 110.85776 * 324.70779 * 11 9 7 26 26 H 1.08992 * 109.89089 * 262.87493 * 12 11 9 27 27 H 1.09003 * 109.88622 * 141.68762 * 12 11 9 28 28 H 1.08995 * 109.47216 * 309.86952 * 14 13 12 29 29 H 1.09008 * 109.46814 * 189.87219 * 14 13 12 30 30 H 1.09000 * 109.39323 * 56.89069 * 17 15 14 31 31 H 1.08995 * 109.39471 * 297.18362 * 17 15 14 32 32 H 1.09004 * 109.22563 * 190.99688 * 18 17 15 33 33 H 1.09001 * 109.22349 * 310.35535 * 18 17 15 34 34 H 1.09002 * 109.38965 * 49.47726 * 19 18 17 35 35 H 1.09004 * 109.38998 * 169.17578 * 19 18 17 36 36 H 1.09004 * 109.57375 * 303.22188 * 20 19 18 37 37 H 1.08999 * 109.58185 * 182.83147 * 20 19 18 38 38 H 1.09002 * 110.36633 * 94.73933 * 22 13 12 39 39 H 1.09000 * 110.37713 * 217.07804 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6478 -2.5993 -0.9029 11 6 0.3742 -2.6347 1.2720 12 6 0.2540 -4.1628 1.4503 13 7 1.3923 -4.7761 0.7416 14 6 2.1865 -5.6156 1.6484 15 6 1.3838 -6.8633 2.0226 16 1 0.4574 -6.5673 2.5148 17 6 2.2098 -7.7403 2.9673 18 6 1.3899 -8.9506 3.4044 19 6 1.2026 -9.9235 2.2441 20 6 0.2489 -9.3235 1.2076 21 16 0.9995 -7.8162 0.5236 22 6 2.2186 -3.6985 0.1570 23 1 -0.4850 0.8400 0.0004 24 1 -0.6069 -2.1869 1.1136 25 1 0.8675 -2.1838 2.1330 26 1 -0.6837 -4.5138 1.0196 27 1 0.2962 -4.4170 2.5094 28 1 2.4239 -5.0521 2.5507 29 1 3.1104 -5.9132 1.1523 30 1 2.4937 -7.1595 3.8449 31 1 3.1091 -8.0791 2.4530 32 1 1.9061 -9.4586 4.2191 33 1 0.4130 -8.6154 3.7530 34 1 2.1677 -10.1197 1.7770 35 1 0.7871 -10.8587 2.6194 36 1 -0.6995 -9.0756 1.6844 37 1 0.0800 -10.0432 0.4067 38 1 3.0366 -3.4404 0.8296 39 1 2.6071 -4.0030 -0.8149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:29 Heat of formation + Delta-G solvation = -33.291370 kcal Electronic energy + Delta-G solvation = -17239.312207 eV Core-core repulsion = 14692.143917 eV Total energy + Delta-G solvation = -2547.168290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92003 -37.77862 -35.36419 -33.69873 -31.29977 -30.01178 -28.69579 -26.49066 -25.04841 -22.98399 -21.71767 -21.33785 -21.20911 -18.47687 -17.75596 -16.82093 -16.68677 -16.19782 -15.80557 -15.58932 -14.71164 -14.54882 -14.34280 -14.23109 -14.12513 -13.56823 -13.32448 -13.03935 -12.99562 -12.77486 -12.62556 -12.39018 -12.22669 -12.01185 -11.83599 -11.78086 -11.51370 -11.24742 -11.10778 -10.88835 -10.51338 -10.37346 -9.14180 -8.43852 -8.14503 -6.25659 0.93460 1.39696 1.41390 1.53095 1.82080 2.41538 3.10550 3.17292 3.70609 3.83632 3.92360 4.04876 4.14342 4.23210 4.26064 4.34708 4.47836 4.48457 4.57092 4.68671 4.72814 4.75386 4.83638 4.86050 5.00937 5.04255 5.10304 5.13308 5.17307 5.24374 5.32737 5.38989 5.58749 5.80732 5.90571 6.05119 6.30911 6.36213 6.83821 7.42466 8.94803 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.053265 B = 0.004321 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.543674 B = 6477.991014 C = 6570.868224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.039 3.961 10 H 0.000 1.000 11 C -0.106 4.106 12 C 0.054 3.946 13 N -0.528 5.528 14 C 0.069 3.931 15 C -0.030 4.030 16 H 0.078 0.922 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.086 4.086 21 S -0.284 6.284 22 C 0.062 3.938 23 H 0.261 0.739 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.036 0.964 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -18.777 8.186 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.020 3.980 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.074 4.074 13 N -0.252 5.252 14 C -0.060 4.060 15 C -0.160 4.160 16 H 0.096 0.904 17 C -0.153 4.153 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.235 4.235 21 S -0.057 6.057 22 C -0.066 4.066 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.055 0.945 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.445 -18.725 6.709 20.041 hybrid contribution 0.114 1.532 1.535 2.172 sum 2.560 -17.193 8.244 19.239 Atomic orbital electron populations 1.70105 1.07321 1.27241 1.51011 1.25774 0.95671 1.02505 0.94559 0.85516 0.79099 0.79477 0.77625 1.18998 1.20613 1.20535 1.21419 0.92984 0.91660 1.51166 0.92674 1.19666 0.92882 0.92186 0.93261 0.98156 1.22450 1.00092 0.93595 0.98400 1.22753 0.94601 0.93617 0.96414 1.63580 1.08964 1.20494 1.32156 1.22104 0.96131 0.92488 0.95275 1.23207 1.01469 0.96177 0.95113 0.90400 1.21774 0.98594 0.96313 0.98645 1.21510 1.00538 0.95570 0.98632 1.21697 0.99565 0.99050 0.95183 1.23565 1.00978 0.96390 1.02537 1.87578 1.81303 1.20046 1.16810 1.22897 0.95288 0.90423 0.97963 0.93013 0.93527 0.94714 0.91948 0.92499 0.93287 0.90394 0.90010 0.90581 0.89345 0.92046 0.90981 0.89140 0.90097 0.87306 0.94524 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 12.12 21.45 0.26 -53.91 16 2 C 0.01 0.79 5.34 84.66 0.45 1.24 16 3 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -30.08 8.55 25.60 0.22 -29.86 16 8 H 0.06 3.04 7.79 -2.91 -0.02 3.01 16 9 C 0.04 2.06 2.96 -10.16 -0.03 2.03 16 10 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 11 C -0.11 -5.17 5.64 31.77 0.18 -4.99 16 12 C 0.05 2.12 6.20 86.65 0.54 2.66 16 13 N -0.53 -20.22 4.73 -885.56 -4.19 -24.41 16 14 C 0.07 2.10 3.99 86.30 0.34 2.44 16 15 C -0.03 -0.77 2.50 30.63 0.08 -0.69 16 16 H 0.08 2.06 7.15 -2.39 -0.02 2.04 16 17 C -0.11 -2.10 5.04 30.49 0.15 -1.94 16 18 C -0.12 -1.83 5.61 30.32 0.17 -1.66 16 19 C -0.12 -1.67 5.75 30.49 0.18 -1.50 16 20 C -0.09 -1.62 6.46 72.01 0.46 -1.15 16 21 S -0.28 -7.87 21.32 -56.49 -1.20 -9.07 16 22 C 0.06 2.70 6.13 86.77 0.53 3.23 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.05 2.47 7.54 -2.39 -0.02 2.45 16 25 H 0.03 1.72 8.04 -2.39 -0.02 1.70 16 26 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.06 1.96 6.92 -2.39 -0.02 1.94 16 28 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 29 H 0.08 2.33 8.07 -2.38 -0.02 2.32 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 32 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.07 1.10 8.06 -2.39 -0.02 1.08 16 35 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.57 7.70 -2.39 -0.02 1.55 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -62.39 311.98 1.15 -61.23 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.99 Total: 10.28 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.27 Total: -30.20 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -3.93 Total: -78.31 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.20 Total: -9.07 kcal Total: -62.39 1.15 -61.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.943 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds