Wall clock time and date at job start Mon Mar 30 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48504 * 109.47054 * 269.99833 * 3 2 1 5 5 H 1.48497 * 109.47061 * 29.99966 * 3 2 1 6 6 H 1.48501 * 109.47018 * 150.00409 * 3 2 1 7 7 C 1.37877 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99781 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27338 * 302.08626 * 9 7 2 11 11 C 1.54594 * 110.39549 * 64.23084 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.91819 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.09004 * 109.57342 * 299.74541 * 15 14 13 17 17 C 1.53096 * 109.57334 * 179.35791 * 15 14 13 18 18 C 1.52585 * 109.95147 * 177.17222 * 17 15 14 19 19 C 1.52579 * 110.72886 * 70.67138 * 18 17 15 20 20 C 1.53095 * 109.95810 * 289.32232 * 19 18 17 21 21 S 1.81746 * 109.57286 * 59.99963 * 15 14 13 22 22 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 23 23 H 0.97007 * 120.00051 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.72754 * 259.27718 * 11 9 7 25 25 H 1.08999 * 110.72080 * 22.56098 * 11 9 7 26 26 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 27 27 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 28 28 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 29 29 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 30 30 H 1.08995 * 109.38919 * 297.31429 * 17 15 14 31 31 H 1.08999 * 109.39521 * 57.02138 * 17 15 14 32 32 H 1.08998 * 109.22232 * 310.34531 * 18 17 15 33 33 H 1.09008 * 109.18935 * 190.97151 * 18 17 15 34 34 H 1.09005 * 109.38839 * 169.17270 * 19 18 17 35 35 H 1.08998 * 109.39047 * 49.47735 * 19 18 17 36 36 H 1.08998 * 109.57193 * 303.22022 * 20 19 18 37 37 H 1.08997 * 109.57742 * 182.83096 * 20 19 18 38 38 H 1.09002 * 109.91668 * 215.45268 * 22 13 12 39 39 H 1.09002 * 109.91761 * 94.35443 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4366 -2.6498 -1.3070 12 6 0.6010 -4.1526 -1.6464 13 7 2.0061 -4.4424 -1.2513 14 6 2.2119 -5.8813 -1.0388 15 6 1.7301 -6.6525 -2.2692 16 1 0.6687 -6.4615 -2.4275 17 6 1.9582 -8.1514 -2.0568 18 6 1.4168 -8.9346 -3.2491 19 6 2.2875 -8.7116 -4.4821 20 6 2.1011 -7.2839 -5.0021 21 16 2.6697 -6.1170 -3.7299 22 6 2.2344 -3.6841 -0.0021 23 1 -0.4850 0.8401 0.0004 24 1 -0.6120 -2.4051 -1.1379 25 1 0.8563 -2.0277 -2.0975 26 1 -0.0926 -4.7571 -1.0620 27 1 0.4576 -4.3240 -2.7133 28 1 3.2722 -6.0770 -0.8793 29 1 1.6473 -6.2037 -0.1638 30 1 3.0260 -8.3437 -1.9523 31 1 1.4441 -8.4709 -1.1503 32 1 0.4001 -8.6051 -3.4632 33 1 1.4057 -9.9969 -3.0048 34 1 2.0020 -9.4202 -5.2596 35 1 3.3338 -8.8674 -4.2192 36 1 1.0467 -7.1074 -5.2146 37 1 2.6867 -7.1469 -5.9111 38 1 3.2599 -3.3156 0.0265 39 1 2.0456 -4.3236 0.8603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260277204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:33 Heat of formation + Delta-G solvation = -15.196597 kcal Electronic energy + Delta-G solvation = -17317.422541 eV Core-core repulsion = 14771.038899 eV Total energy + Delta-G solvation = -2546.383642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.34949 -36.81977 -33.71168 -32.07560 -29.91610 -28.18522 -27.51034 -24.76337 -23.57635 -21.91490 -20.83542 -19.84467 -19.23451 -16.75544 -16.43945 -15.35270 -15.14859 -14.95107 -14.37333 -14.05517 -13.78244 -13.62142 -13.11375 -12.71086 -12.47500 -12.30525 -11.90003 -11.65696 -11.30073 -11.18273 -11.06472 -10.91782 -10.75860 -10.58954 -10.52867 -10.32281 -10.11291 -9.59789 -9.42562 -9.20903 -8.72287 -8.33715 -7.64300 -7.34350 -5.95264 -3.96492 1.91461 2.76585 3.36622 3.42733 3.46386 4.39410 4.50739 4.60132 4.63349 4.81922 5.00945 5.09118 5.16410 5.36393 5.39359 5.47860 5.55457 5.66795 5.71948 5.79188 5.83560 5.86881 5.94009 5.97631 6.09422 6.18723 6.32273 6.34679 6.65660 6.93748 7.19897 7.27633 7.51809 7.71430 7.83630 7.96863 8.09121 8.51160 9.04823 9.66621 11.14955 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043709 B = 0.004642 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.453227 B = 6030.423430 C = 6187.754722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.090 4.090 12 C 0.029 3.971 13 N -0.507 5.507 14 C 0.065 3.935 15 C -0.052 4.052 16 H 0.086 0.914 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.119 4.119 20 C -0.104 4.104 21 S -0.209 6.209 22 C 0.044 3.956 23 H 0.259 0.741 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -17.566 -6.604 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.099 4.099 13 N -0.231 5.231 14 C -0.065 4.065 15 C -0.181 4.181 16 H 0.104 0.896 17 C -0.157 4.157 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.253 4.253 21 S 0.017 5.983 22 C -0.083 4.083 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.751 -16.433 -7.102 18.112 hybrid contribution -1.105 -0.344 0.717 1.361 sum 1.646 -16.777 -6.385 18.026 Atomic orbital electron populations 1.69970 1.05895 1.26368 1.50904 1.24970 0.94830 0.99018 0.95230 0.86620 0.79849 0.83590 0.78098 1.20688 1.21415 1.19953 1.21182 0.92740 0.90182 1.50236 0.92489 1.19484 0.92453 0.91914 0.93980 0.95348 1.22378 1.00048 0.90651 0.99800 1.23410 0.88022 0.99183 0.99238 1.64896 1.23473 1.04143 1.30542 1.22106 1.01154 0.89899 0.93352 1.23366 1.01758 0.96743 0.96219 0.89570 1.21780 1.02500 0.93020 0.98387 1.21510 0.99569 1.00491 0.94935 1.21703 1.01146 0.95490 0.97508 1.23530 1.04415 0.96852 1.00507 1.87520 1.59770 1.44924 1.06062 1.23109 1.01955 0.95464 0.87760 0.93179 0.92463 0.91936 0.95791 0.91397 0.90481 0.94196 0.90585 0.91108 0.91914 0.91344 0.91470 0.90774 0.90385 0.88234 0.91103 0.96374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 12.63 55.43 0.70 -25.30 16 2 C 0.06 1.71 5.34 -17.82 -0.10 1.62 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.15 8.38 -34.44 -0.29 -14.43 16 8 H 0.06 1.59 7.34 -52.49 -0.39 1.21 16 9 C 0.04 1.03 2.86 -90.42 -0.26 0.78 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.16 5.75 -24.87 -0.14 -2.31 16 12 C 0.03 0.57 5.12 -1.74 -0.01 0.56 16 13 N -0.51 -9.93 4.95 -230.20 -1.14 -11.07 16 14 C 0.06 1.01 4.49 -3.82 -0.02 1.00 16 15 C -0.05 -0.70 2.14 -26.68 -0.06 -0.75 16 16 H 0.09 1.21 6.84 -51.93 -0.35 0.86 16 17 C -0.12 -1.22 5.04 -26.89 -0.14 -1.36 16 18 C -0.13 -1.14 5.61 -27.16 -0.15 -1.29 16 19 C -0.12 -1.06 5.75 -26.90 -0.15 -1.21 16 20 C -0.10 -1.11 6.46 37.21 0.24 -0.87 16 21 S -0.21 -3.05 21.29 -107.50 -2.29 -5.34 16 22 C 0.04 0.96 6.34 -2.75 -0.02 0.95 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 25 H 0.06 1.63 7.86 -51.93 -0.41 1.22 16 26 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 27 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.61 7.81 -51.92 -0.41 0.20 16 30 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.60 7.39 -51.93 -0.38 1.21 16 39 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -29.06 311.14 -11.07 -40.13 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.92 Total: -2.51 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.09 Total: -17.33 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.44 Total: -36.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.29 Total: -5.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.06 -11.07 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.934 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds