Wall clock time and date at job start Mon Mar 30 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48504 * 109.47054 * 269.99833 * 3 2 1 5 5 H 1.48497 * 109.47061 * 29.99966 * 3 2 1 6 6 H 1.48501 * 109.47018 * 150.00409 * 3 2 1 7 7 C 1.37877 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99781 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27338 * 302.08626 * 9 7 2 11 11 C 1.54594 * 110.39549 * 64.23084 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.91819 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.09004 * 109.57342 * 299.74541 * 15 14 13 17 17 C 1.53096 * 109.57334 * 179.35791 * 15 14 13 18 18 C 1.52585 * 109.95147 * 177.17222 * 17 15 14 19 19 C 1.52579 * 110.72886 * 70.67138 * 18 17 15 20 20 C 1.53095 * 109.95810 * 289.32232 * 19 18 17 21 21 S 1.81746 * 109.57286 * 59.99963 * 15 14 13 22 22 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 23 23 H 0.97007 * 120.00051 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.72754 * 259.27718 * 11 9 7 25 25 H 1.08999 * 110.72080 * 22.56098 * 11 9 7 26 26 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 27 27 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 28 28 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 29 29 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 30 30 H 1.08995 * 109.38919 * 297.31429 * 17 15 14 31 31 H 1.08999 * 109.39521 * 57.02138 * 17 15 14 32 32 H 1.08998 * 109.22232 * 310.34531 * 18 17 15 33 33 H 1.09008 * 109.18935 * 190.97151 * 18 17 15 34 34 H 1.09005 * 109.38839 * 169.17270 * 19 18 17 35 35 H 1.08998 * 109.39047 * 49.47735 * 19 18 17 36 36 H 1.08998 * 109.57193 * 303.22022 * 20 19 18 37 37 H 1.08997 * 109.57742 * 182.83096 * 20 19 18 38 38 H 1.09002 * 109.91668 * 215.45268 * 22 13 12 39 39 H 1.09002 * 109.91761 * 94.35443 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4366 -2.6498 -1.3070 12 6 0.6010 -4.1526 -1.6464 13 7 2.0061 -4.4424 -1.2513 14 6 2.2119 -5.8813 -1.0388 15 6 1.7301 -6.6525 -2.2692 16 1 0.6687 -6.4615 -2.4275 17 6 1.9582 -8.1514 -2.0568 18 6 1.4168 -8.9346 -3.2491 19 6 2.2875 -8.7116 -4.4821 20 6 2.1011 -7.2839 -5.0021 21 16 2.6697 -6.1170 -3.7299 22 6 2.2344 -3.6841 -0.0021 23 1 -0.4850 0.8401 0.0004 24 1 -0.6120 -2.4051 -1.1379 25 1 0.8563 -2.0277 -2.0975 26 1 -0.0926 -4.7571 -1.0620 27 1 0.4576 -4.3240 -2.7133 28 1 3.2722 -6.0770 -0.8793 29 1 1.6473 -6.2037 -0.1638 30 1 3.0260 -8.3437 -1.9523 31 1 1.4441 -8.4709 -1.1503 32 1 0.4001 -8.6051 -3.4632 33 1 1.4057 -9.9969 -3.0048 34 1 2.0020 -9.4202 -5.2596 35 1 3.3338 -8.8674 -4.2192 36 1 1.0467 -7.1074 -5.2146 37 1 2.6867 -7.1469 -5.9111 38 1 3.2599 -3.3156 0.0265 39 1 2.0456 -4.3236 0.8603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:33 Heat of formation + Delta-G solvation = -31.539328 kcal Electronic energy + Delta-G solvation = -17318.131215 eV Core-core repulsion = 14771.038899 eV Total energy + Delta-G solvation = -2547.092316 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91156 -37.77546 -35.38857 -33.67818 -31.33410 -29.99781 -28.67180 -26.41730 -25.03948 -23.13185 -21.66902 -21.37072 -21.08580 -18.58215 -17.75364 -16.85172 -16.48864 -16.29959 -15.92801 -15.34862 -14.87749 -14.68623 -14.45624 -14.10123 -13.93606 -13.66893 -13.34397 -13.03210 -12.82597 -12.60902 -12.54789 -12.45782 -12.16485 -12.00444 -11.90503 -11.79740 -11.53849 -11.31649 -11.08882 -10.82396 -10.49022 -10.39932 -9.18578 -8.47162 -8.12465 -6.20638 0.91110 1.41276 1.42616 1.52525 1.79711 2.44397 3.11959 3.20601 3.64124 3.82849 3.91115 4.05306 4.18877 4.21017 4.23170 4.37837 4.44760 4.49662 4.51456 4.63776 4.72466 4.74781 4.86501 4.91000 5.00507 5.03520 5.09713 5.12960 5.16851 5.24530 5.37669 5.38597 5.55743 5.72761 5.85044 6.17062 6.29076 6.39947 6.87243 7.45856 8.97256 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043709 B = 0.004642 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.453227 B = 6030.423430 C = 6187.754722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.032 3.968 10 H 0.002 0.998 11 C -0.083 4.083 12 C 0.048 3.952 13 N -0.517 5.517 14 C 0.064 3.936 15 C -0.036 4.036 16 H 0.081 0.919 17 C -0.113 4.113 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.087 4.087 21 S -0.284 6.284 22 C 0.056 3.944 23 H 0.260 0.740 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -19.504 -7.174 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.013 3.987 10 H 0.020 0.980 11 C -0.122 4.122 12 C -0.079 4.079 13 N -0.241 5.241 14 C -0.065 4.065 15 C -0.165 4.165 16 H 0.099 0.901 17 C -0.152 4.152 18 C -0.163 4.163 19 C -0.155 4.155 20 C -0.235 4.235 21 S -0.058 6.058 22 C -0.072 4.072 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.066 -18.391 -7.671 20.161 hybrid contribution -1.209 0.228 0.870 1.506 sum 1.857 -18.162 -6.801 19.483 Atomic orbital electron populations 1.70083 1.07193 1.27199 1.51532 1.25735 0.95680 1.02365 0.94849 0.85618 0.78802 0.79463 0.78160 1.20360 1.20755 1.19220 1.21511 0.92748 0.91740 1.50342 0.93039 1.19466 0.92956 0.92816 0.93435 0.98025 1.22136 0.98348 0.93449 0.98218 1.23193 0.88679 0.95988 1.00081 1.64824 1.23118 1.06741 1.29390 1.22184 1.01712 0.87466 0.95096 1.23276 1.00672 0.98426 0.94164 0.90100 1.21764 1.02885 0.90738 0.99812 1.21514 0.99235 1.01392 0.94132 1.21694 1.01157 0.94445 0.98176 1.23572 1.04403 0.96628 0.98944 1.87728 1.60961 1.48034 1.09094 1.22841 1.00063 0.94705 0.89580 0.93098 0.94211 0.94835 0.94224 0.90360 0.90201 0.92993 0.90546 0.89823 0.92031 0.89271 0.89148 0.90982 0.90063 0.87388 0.92266 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 12.63 21.45 0.27 -54.55 16 2 C 0.01 0.70 5.34 84.66 0.45 1.15 16 3 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.53 -30.13 8.38 25.60 0.21 -29.91 16 8 H 0.05 2.93 7.34 -2.91 -0.02 2.91 16 9 C 0.03 1.69 2.86 -10.66 -0.03 1.66 16 10 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 11 C -0.08 -4.08 5.75 31.80 0.18 -3.90 16 12 C 0.05 1.88 5.12 86.59 0.44 2.32 16 13 N -0.52 -19.94 4.95 -882.22 -4.37 -24.31 16 14 C 0.06 1.91 4.49 86.30 0.39 2.30 16 15 C -0.04 -0.91 2.14 30.63 0.07 -0.84 16 16 H 0.08 2.10 6.84 -2.39 -0.02 2.09 16 17 C -0.11 -2.02 5.04 30.49 0.15 -1.86 16 18 C -0.13 -1.80 5.61 30.32 0.17 -1.63 16 19 C -0.12 -1.67 5.75 30.49 0.18 -1.50 16 20 C -0.09 -1.66 6.46 72.01 0.46 -1.20 16 21 S -0.28 -8.00 21.29 -56.49 -1.20 -9.21 16 22 C 0.06 2.43 6.34 86.44 0.55 2.98 16 23 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 24 H 0.04 2.04 8.12 -2.39 -0.02 2.02 16 25 H 0.03 1.80 7.86 -2.39 -0.02 1.78 16 26 H 0.04 1.43 8.00 -2.39 -0.02 1.41 16 27 H 0.08 2.91 7.70 -2.38 -0.02 2.89 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.44 7.81 -2.38 -0.02 1.43 16 30 H 0.08 1.39 8.06 -2.39 -0.02 1.37 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.10 8.06 -2.39 -0.02 1.09 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.70 7.39 -2.39 -0.02 2.68 16 39 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 Total: -1.00 -63.58 311.14 0.94 -62.64 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.99 Total: 8.71 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.23 Total: -30.43 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -4.10 Total: -78.86 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.20 Total: -9.21 kcal Total: -63.58 0.94 -62.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.097 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds