Wall clock time and date at job start Mon Mar 30 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99578 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99827 * 3 2 1 5 5 H 1.48490 * 109.47371 * 30.00282 * 3 2 1 6 6 H 1.48500 * 109.46885 * 150.00496 * 3 2 1 7 7 C 1.37869 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00026 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00005 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.62832 * 56.89678 * 9 7 2 11 11 C 1.55137 * 110.70909 * 293.59482 * 9 7 2 12 12 C 1.54904 * 101.65925 * 205.96702 * 11 9 7 13 13 N 1.47850 * 104.79309 * 37.06617 * 12 11 9 14 14 C 1.46905 * 111.00037 * 213.63720 * 13 12 11 15 15 C 1.52995 * 109.47073 * 290.84613 * 14 13 12 16 16 H 1.09006 * 109.68185 * 59.67776 * 15 14 13 17 17 C 1.53101 * 109.57435 * 179.97438 * 15 14 13 18 18 C 1.52582 * 109.87662 * 182.78382 * 17 15 14 19 19 C 1.52588 * 110.72589 * 289.37626 * 18 17 15 20 20 C 1.53100 * 109.95491 * 70.67284 * 19 18 17 21 21 S 1.81546 * 109.45130 * 299.40016 * 15 14 13 22 22 C 1.47446 * 108.56949 * 335.90629 * 13 12 11 23 23 H 0.97005 * 119.99927 * 359.97438 * 1 2 3 24 24 H 1.09007 * 110.98555 * 324.05760 * 11 9 7 25 25 H 1.09005 * 110.98877 * 87.83244 * 11 9 7 26 26 H 1.09001 * 110.37193 * 278.24565 * 12 11 9 27 27 H 1.08993 * 110.37846 * 155.89664 * 12 11 9 28 28 H 1.08996 * 109.47184 * 170.84569 * 14 13 12 29 29 H 1.09000 * 109.46678 * 50.84330 * 14 13 12 30 30 H 1.09002 * 109.38939 * 62.68379 * 17 15 14 31 31 H 1.08996 * 109.38954 * 302.88543 * 17 15 14 32 32 H 1.09003 * 109.22522 * 49.69464 * 18 17 15 33 33 H 1.09001 * 109.22733 * 169.09888 * 18 17 15 34 34 H 1.08995 * 109.38820 * 190.82131 * 19 18 17 35 35 H 1.08999 * 109.38911 * 310.52817 * 19 18 17 36 36 H 1.08996 * 109.57400 * 56.78577 * 20 19 18 37 37 H 1.09004 * 109.57085 * 177.03802 * 20 19 18 38 38 H 1.08996 * 109.88499 * 120.39580 * 22 13 12 39 39 H 1.09000 * 109.88934 * 241.42021 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8952 -0.6373 0.8551 11 6 4.0606 -0.6122 -1.3292 12 6 5.4472 -1.2966 -1.4213 13 7 5.2309 -2.6604 -0.8928 14 6 6.4223 -3.1451 -0.1831 15 6 7.5493 -3.3919 -1.1879 16 1 7.7858 -2.4644 -1.7095 17 6 8.7925 -3.8966 -0.4506 18 6 9.9422 -4.0794 -1.4371 19 6 9.6815 -5.2696 -2.3556 20 6 8.5503 -4.9378 -3.3325 21 16 7.0244 -4.6488 -2.3882 22 6 4.0572 -2.6374 -0.0005 23 1 -0.4850 0.8401 0.0004 24 1 3.4283 -0.8963 -2.1704 25 1 4.1627 0.4714 -1.2685 26 1 6.1749 -0.7636 -0.8094 27 1 5.7809 -1.3400 -2.4580 28 1 6.1847 -4.0757 0.3323 29 1 6.7410 -2.3982 0.5440 30 1 8.5685 -4.8515 0.0249 31 1 9.0807 -3.1719 0.3108 32 1 10.0451 -3.1768 -2.0395 33 1 10.8660 -4.2491 -0.8841 34 1 10.5877 -5.4994 -2.9159 35 1 9.3994 -6.1347 -1.7557 36 1 8.8060 -4.0406 -3.8962 37 1 8.4047 -5.7715 -4.0194 38 1 3.2950 -3.3218 -0.3729 39 1 4.3527 -2.9252 1.0084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:35 Heat of formation + Delta-G solvation = -30.181807 kcal Electronic energy + Delta-G solvation = -17312.269157 eV Core-core repulsion = 14765.235707 eV Total energy + Delta-G solvation = -2547.033450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04467 -37.80763 -35.35432 -33.89918 -31.66404 -30.14967 -28.83748 -26.41937 -24.95055 -23.01436 -21.67017 -21.63430 -21.13531 -19.01516 -17.79931 -16.98257 -16.57858 -16.03051 -15.99332 -15.35266 -14.95998 -14.74182 -14.53822 -14.21516 -14.07674 -13.98634 -13.54082 -13.14943 -12.91150 -12.76318 -12.61050 -12.37212 -12.08808 -11.92869 -11.84079 -11.77255 -11.57383 -11.41322 -11.18644 -11.11199 -10.72573 -10.37154 -9.15976 -8.44084 -8.29938 -6.33948 0.94066 1.31724 1.34175 1.44567 1.82169 2.33114 3.02789 3.05610 3.68256 3.82836 3.91270 3.98890 4.10952 4.15395 4.19708 4.27987 4.35501 4.45645 4.49268 4.59422 4.69582 4.73174 4.78572 4.82234 4.87083 5.01287 5.02603 5.09719 5.13696 5.17483 5.20050 5.32860 5.39060 5.48287 5.70773 6.09140 6.23457 6.32969 6.71799 7.30918 8.87198 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.046604 B = 0.004747 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.660568 B = 5897.460797 C = 6040.403834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.513 4.513 8 H 0.031 0.969 9 C -0.006 4.006 10 H 0.033 0.967 11 C -0.132 4.132 12 C 0.055 3.945 13 N -0.530 5.530 14 C 0.067 3.933 15 C -0.032 4.032 16 H 0.083 0.917 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.087 4.087 21 S -0.284 6.284 22 C 0.069 3.931 23 H 0.266 0.734 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.572 -6.522 -3.257 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.169 1.169 7 C -0.551 4.551 8 H 0.049 0.951 9 C -0.026 4.026 10 H 0.051 0.949 11 C -0.170 4.170 12 C -0.073 4.073 13 N -0.254 5.254 14 C -0.062 4.062 15 C -0.161 4.161 16 H 0.101 0.899 17 C -0.153 4.153 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.235 4.235 21 S -0.058 6.058 22 C -0.058 4.058 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.068 0.932 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.322 -7.255 -3.807 24.719 hybrid contribution 0.519 1.796 0.740 2.011 sum 23.841 -5.459 -3.067 24.650 Atomic orbital electron populations 1.70063 1.08301 1.28045 1.52807 1.25883 0.95404 1.03069 0.94081 0.85836 0.79328 0.78585 0.79218 1.18928 1.21926 1.16912 1.21232 0.90992 0.92957 1.49945 0.95084 1.20284 0.94197 0.94115 0.93999 0.94880 1.22952 0.96221 0.98408 0.99410 1.22975 0.95985 0.87855 1.00438 1.63566 1.03487 1.23602 1.34732 1.22179 0.89342 1.00471 0.94165 1.23182 0.97450 0.98540 0.96920 0.89875 1.21776 0.92771 1.02422 0.98375 1.21509 0.98550 0.98553 0.97620 1.21701 0.97889 0.98770 0.97222 1.23556 0.94827 1.05201 0.99926 1.87663 1.20598 1.54240 1.43300 1.22550 0.91852 0.97131 0.94293 0.92538 0.92728 0.92598 0.92817 0.90052 0.90508 0.92631 0.90789 0.89770 0.91849 0.89466 0.89260 0.91150 0.89954 0.87536 0.93213 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 2 C 0.01 0.74 5.46 84.65 0.46 1.20 16 3 Si 0.95 44.69 24.80 68.60 1.70 46.39 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.25 -10.64 6.46 99.48 0.64 -10.00 16 7 C -0.51 -29.93 9.05 25.60 0.23 -29.70 16 8 H 0.03 2.02 7.78 -2.91 -0.02 2.00 16 9 C -0.01 -0.29 2.32 -10.36 -0.02 -0.32 16 10 H 0.03 1.54 7.03 -2.39 -0.02 1.53 16 11 C -0.13 -5.52 5.44 31.98 0.17 -5.35 16 12 C 0.05 1.84 5.78 86.77 0.50 2.34 16 13 N -0.53 -18.49 4.72 -885.53 -4.18 -22.67 16 14 C 0.07 1.83 4.01 86.30 0.35 2.18 16 15 C -0.03 -0.72 2.51 30.63 0.08 -0.64 16 16 H 0.08 1.89 7.50 -2.38 -0.02 1.88 16 17 C -0.11 -1.86 5.05 30.49 0.15 -1.71 16 18 C -0.12 -1.62 5.61 30.32 0.17 -1.45 16 19 C -0.12 -1.56 5.75 30.49 0.18 -1.38 16 20 C -0.09 -1.52 6.45 72.02 0.46 -1.05 16 21 S -0.28 -7.43 21.29 -56.49 -1.20 -8.63 16 22 C 0.07 2.87 6.45 86.65 0.56 3.43 16 23 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 24 H 0.05 2.50 8.04 -2.38 -0.02 2.48 16 25 H 0.06 2.25 5.59 -2.38 -0.01 2.24 16 26 H 0.05 1.59 7.62 -2.39 -0.02 1.57 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.08 2.12 8.03 -2.39 -0.02 2.10 16 29 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 30 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.05 2.31 7.63 -2.39 -0.02 2.29 16 39 H 0.05 1.95 7.55 -2.39 -0.02 1.93 16 Total: -1.00 -66.79 305.30 0.84 -65.95 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.93 Total: 11.66 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 3.29 Total: -32.45 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.88 Total: -82.92 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.70 Total: 46.39 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.20 Total: -8.63 kcal Total: -66.79 0.84 -65.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.772 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds