Wall clock time and date at job start Mon Mar 30 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47101 * 300.00279 * 3 2 1 6 6 H 1.48494 * 109.47029 * 60.00242 * 3 2 1 7 7 C 1.37876 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52185 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.27877 * 177.55585 * 10 9 7 12 12 N 1.46844 * 109.52164 * 300.82041 * 11 10 9 13 13 C 1.46905 * 110.99865 * 185.83576 * 12 11 10 14 14 C 1.52995 * 109.46807 * 170.00274 * 13 12 11 15 15 H 1.08995 * 110.70646 * 56.68873 * 14 13 12 16 16 C 1.54261 * 110.78572 * 180.02562 * 14 13 12 17 17 C 1.52333 * 112.59275 * 142.98880 * 16 14 13 18 18 C 1.54259 * 112.58419 * 0.02562 * 17 16 14 19 19 S 1.83961 * 102.75529 * 335.37527 * 18 17 16 20 20 C 1.46849 * 111.19776 * 61.74458 * 12 11 10 21 21 C 1.53043 * 109.52362 * 298.25185 * 20 12 11 22 22 H 0.96996 * 119.99422 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.52492 * 59.87198 * 9 7 2 24 24 H 1.09000 * 109.50279 * 57.61376 * 10 9 7 25 25 H 1.09000 * 109.53569 * 297.51626 * 10 9 7 26 26 H 1.08991 * 109.46004 * 180.80443 * 11 10 9 27 27 H 1.09007 * 109.44948 * 60.82913 * 11 10 9 28 28 H 1.08994 * 109.46653 * 50.00342 * 13 12 11 29 29 H 1.09001 * 109.46801 * 290.00107 * 13 12 11 30 30 H 1.09010 * 108.86742 * 22.16981 * 16 14 13 31 31 H 1.09000 * 108.86799 * 263.81373 * 16 14 13 32 32 H 1.09000 * 108.86948 * 239.18135 * 17 16 14 33 33 H 1.09001 * 108.86672 * 120.81724 * 17 16 14 34 34 H 1.09002 * 110.78775 * 93.74433 * 18 17 16 35 35 H 1.09002 * 110.78868 * 217.00728 * 18 17 16 36 36 H 1.08998 * 109.46658 * 58.26543 * 20 12 11 37 37 H 1.08999 * 109.46222 * 178.24056 * 20 12 11 38 38 H 1.09000 * 109.50389 * 299.24585 * 21 20 12 39 39 H 1.08997 * 109.50739 * 179.11938 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 0.0611 12 7 0.6545 -5.0186 1.2783 13 6 0.0082 -6.3277 1.4417 14 6 -0.6293 -6.4120 2.8299 15 1 -1.3362 -5.5960 2.9796 16 6 -1.3173 -7.7774 3.0344 17 6 -1.1680 -8.3007 4.4572 18 6 -0.3642 -7.3421 5.3597 19 16 0.6604 -6.4088 4.1501 20 6 -0.3393 -3.9375 1.2785 21 6 0.3763 -2.5849 1.2533 22 1 -0.4849 0.8401 0.0004 23 1 0.6220 -2.5566 -0.8888 24 1 2.8998 -3.5834 0.8671 25 1 2.8426 -3.6331 -0.9116 26 1 2.1804 -5.8160 0.0756 27 1 0.8308 -5.0709 -0.8139 28 1 0.7530 -7.1163 1.3353 29 1 -0.7620 -6.4501 0.6801 30 1 -0.8793 -8.4996 2.3454 31 1 -2.3782 -7.6752 2.8059 32 1 -0.6608 -9.2651 4.4267 33 1 -2.1598 -8.4407 4.8872 34 1 -1.0306 -6.6709 5.9015 35 1 0.2665 -7.9001 6.0518 36 1 -0.9751 -4.0283 0.3978 37 1 -0.9519 -4.0074 2.1773 38 1 1.0018 -2.4875 2.1407 39 1 -0.3617 -1.7829 1.2377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:25 Heat of formation + Delta-G solvation = -14.444640 kcal Electronic energy + Delta-G solvation = -17364.486440 eV Core-core repulsion = 14818.135405 eV Total energy + Delta-G solvation = -2546.351035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.41745 -36.23173 -33.94367 -31.79811 -29.77344 -29.69685 -26.54288 -25.06019 -23.02162 -22.05315 -21.06423 -20.12800 -18.53241 -16.68744 -16.36593 -15.70528 -15.08878 -14.58351 -14.40850 -14.13121 -13.89685 -13.11202 -12.95830 -12.64812 -12.51745 -12.33519 -11.93312 -11.64445 -11.43981 -11.19806 -11.11463 -10.89074 -10.65556 -10.60083 -10.33053 -10.14969 -9.92296 -9.65784 -9.34604 -8.90653 -8.63937 -8.24593 -7.74756 -7.42508 -5.92629 -3.97362 1.99864 2.50483 3.33939 3.41864 3.46473 4.19793 4.49693 4.57154 4.61744 4.80701 5.05239 5.15684 5.24332 5.37091 5.41516 5.54572 5.64734 5.69688 5.77143 5.81701 5.84339 5.94128 6.05429 6.15353 6.24942 6.36292 6.66983 6.68477 6.91765 7.13885 7.23127 7.49145 7.66939 7.72798 7.88562 8.11367 8.21377 8.54221 9.06504 9.66861 11.13707 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.038076 B = 0.004743 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.185399 B = 5901.773994 C = 6081.116141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.530 5.530 13 C 0.072 3.928 14 C -0.029 4.029 15 H 0.096 0.904 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.088 4.088 19 S -0.252 6.252 20 C 0.056 3.944 21 C -0.103 4.103 22 H 0.258 0.742 23 H 0.019 0.981 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -16.052 6.543 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.065 4.065 12 N -0.255 5.255 13 C -0.058 4.058 14 C -0.158 4.158 15 H 0.114 0.886 16 C -0.164 4.164 17 C -0.160 4.160 18 C -0.237 4.237 19 S -0.025 6.025 20 C -0.071 4.071 21 C -0.141 4.141 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.761 -15.382 6.993 17.121 hybrid contribution -1.346 0.351 -0.693 1.554 sum -4.107 -15.030 6.300 16.807 Atomic orbital electron populations 1.69890 1.05869 1.26103 1.51394 1.24963 0.94824 0.98979 0.95258 0.86587 0.80232 0.84032 0.77452 1.19821 1.21190 1.21084 1.21262 0.92931 0.90682 1.49733 0.92715 1.18689 0.92715 0.91773 0.93921 1.21670 0.98715 0.93678 1.00289 1.22097 0.95653 0.99425 0.89333 1.61991 1.23558 1.01493 1.38414 1.21956 0.97386 0.93707 0.92722 1.24054 0.96461 0.99196 0.96094 0.88605 1.22097 1.01238 0.95954 0.97069 1.21947 1.00535 0.99565 0.93965 1.24152 1.00285 0.99737 0.99523 1.88575 1.24917 1.74700 1.14320 1.22326 0.93128 0.93289 0.98383 1.21640 1.00161 0.92843 0.99439 0.93231 0.96248 0.92417 0.93247 0.92451 0.95912 0.90380 0.94282 0.90664 0.91005 0.90946 0.91260 0.89759 0.88305 0.96116 0.92641 0.93698 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 11.37 55.43 0.63 -25.17 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.21 2.16 -91.64 -0.20 1.01 16 10 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 11 C 0.06 1.16 5.46 -3.83 -0.02 1.13 16 12 N -0.53 -9.64 4.50 -234.67 -1.06 -10.69 16 13 C 0.07 1.04 4.31 -3.82 -0.02 1.02 16 14 C -0.03 -0.38 3.20 -26.07 -0.08 -0.47 16 15 H 0.10 1.34 6.37 -51.93 -0.33 1.01 16 16 C -0.12 -1.21 5.93 -26.41 -0.16 -1.36 16 17 C -0.12 -1.04 6.30 -26.41 -0.17 -1.21 16 18 C -0.09 -0.90 7.45 37.82 0.28 -0.62 16 19 S -0.25 -3.67 22.65 -107.50 -2.44 -6.11 16 20 C 0.06 1.12 5.30 -3.83 -0.02 1.10 16 21 C -0.10 -2.49 5.12 -26.65 -0.14 -2.62 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.08 7.99 -51.93 -0.41 0.67 16 29 H 0.04 0.54 8.12 -51.93 -0.42 0.11 16 30 H 0.07 0.69 7.78 -51.92 -0.40 0.29 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.03 6.18 -51.93 -0.32 0.71 16 38 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 LS Contribution 310.05 15.07 4.67 4.67 Total: -1.00 -29.28 310.05 -11.08 -40.36 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.82 Total: -2.31 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -1.05 Total: -17.40 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.43 Total: -35.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.44 Total: -6.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.28 -11.08 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.912 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds