Wall clock time and date at job start Mon Mar 30 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47101 * 300.00279 * 3 2 1 6 6 H 1.48494 * 109.47029 * 60.00242 * 3 2 1 7 7 C 1.37876 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52185 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.27877 * 177.55585 * 10 9 7 12 12 N 1.46844 * 109.52164 * 300.82041 * 11 10 9 13 13 C 1.46905 * 110.99865 * 185.83576 * 12 11 10 14 14 C 1.52995 * 109.46807 * 170.00274 * 13 12 11 15 15 H 1.08995 * 110.70646 * 56.68873 * 14 13 12 16 16 C 1.54261 * 110.78572 * 180.02562 * 14 13 12 17 17 C 1.52333 * 112.59275 * 142.98880 * 16 14 13 18 18 C 1.54259 * 112.58419 * 0.02562 * 17 16 14 19 19 S 1.83961 * 102.75529 * 335.37527 * 18 17 16 20 20 C 1.46849 * 111.19776 * 61.74458 * 12 11 10 21 21 C 1.53043 * 109.52362 * 298.25185 * 20 12 11 22 22 H 0.96996 * 119.99422 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.52492 * 59.87198 * 9 7 2 24 24 H 1.09000 * 109.50279 * 57.61376 * 10 9 7 25 25 H 1.09000 * 109.53569 * 297.51626 * 10 9 7 26 26 H 1.08991 * 109.46004 * 180.80443 * 11 10 9 27 27 H 1.09007 * 109.44948 * 60.82913 * 11 10 9 28 28 H 1.08994 * 109.46653 * 50.00342 * 13 12 11 29 29 H 1.09001 * 109.46801 * 290.00107 * 13 12 11 30 30 H 1.09010 * 108.86742 * 22.16981 * 16 14 13 31 31 H 1.09000 * 108.86799 * 263.81373 * 16 14 13 32 32 H 1.09000 * 108.86948 * 239.18135 * 17 16 14 33 33 H 1.09001 * 108.86672 * 120.81724 * 17 16 14 34 34 H 1.09002 * 110.78775 * 93.74433 * 18 17 16 35 35 H 1.09002 * 110.78868 * 217.00728 * 18 17 16 36 36 H 1.08998 * 109.46658 * 58.26543 * 20 12 11 37 37 H 1.08999 * 109.46222 * 178.24056 * 20 12 11 38 38 H 1.09000 * 109.50389 * 299.24585 * 21 20 12 39 39 H 1.08997 * 109.50739 * 179.11938 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 0.0611 12 7 0.6545 -5.0186 1.2783 13 6 0.0082 -6.3277 1.4417 14 6 -0.6293 -6.4120 2.8299 15 1 -1.3362 -5.5960 2.9796 16 6 -1.3173 -7.7774 3.0344 17 6 -1.1680 -8.3007 4.4572 18 6 -0.3642 -7.3421 5.3597 19 16 0.6604 -6.4088 4.1501 20 6 -0.3393 -3.9375 1.2785 21 6 0.3763 -2.5849 1.2533 22 1 -0.4849 0.8401 0.0004 23 1 0.6220 -2.5566 -0.8888 24 1 2.8998 -3.5834 0.8671 25 1 2.8426 -3.6331 -0.9116 26 1 2.1804 -5.8160 0.0756 27 1 0.8308 -5.0709 -0.8139 28 1 0.7530 -7.1163 1.3353 29 1 -0.7620 -6.4501 0.6801 30 1 -0.8793 -8.4996 2.3454 31 1 -2.3782 -7.6752 2.8059 32 1 -0.6608 -9.2651 4.4267 33 1 -2.1598 -8.4407 4.8872 34 1 -1.0306 -6.6709 5.9015 35 1 0.2665 -7.9001 6.0518 36 1 -0.9751 -4.0283 0.3978 37 1 -0.9519 -4.0074 2.1773 38 1 1.0018 -2.4875 2.1407 39 1 -0.3617 -1.7829 1.2377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:25 Heat of formation + Delta-G solvation = -30.897437 kcal Electronic energy + Delta-G solvation = -17365.199887 eV Core-core repulsion = 14818.135405 eV Total energy + Delta-G solvation = -2547.064482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95303 -37.25522 -35.62030 -33.53724 -31.49454 -31.02024 -27.98991 -26.46411 -24.48007 -23.71418 -22.54034 -21.02507 -20.34022 -18.45718 -17.67248 -17.03797 -16.51763 -16.06236 -15.82926 -15.34197 -15.00207 -14.82337 -14.40990 -14.21685 -14.10295 -13.63125 -13.19663 -12.93036 -12.85823 -12.75250 -12.52266 -12.33687 -12.11287 -12.02755 -11.95601 -11.86612 -11.41512 -11.25685 -10.80755 -10.67827 -10.57408 -10.37393 -9.17316 -8.56176 -8.08430 -6.21432 1.03540 1.39151 1.41004 1.52627 1.58015 2.43647 2.96888 3.18519 3.65367 3.74774 4.00055 4.14820 4.18260 4.29596 4.33138 4.39069 4.41803 4.52039 4.58052 4.66074 4.75477 4.81650 4.83844 4.93156 4.98610 5.08410 5.09942 5.12485 5.23296 5.27248 5.34128 5.56271 5.62746 6.00177 6.02374 6.29632 6.32857 6.41343 6.89839 7.46191 8.96486 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.038076 B = 0.004743 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.185399 B = 5901.773994 C = 6081.116141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.048 0.952 9 C 0.045 3.955 10 C -0.099 4.099 11 C 0.069 3.931 12 N -0.540 5.540 13 C 0.074 3.926 14 C -0.017 4.017 15 H 0.083 0.917 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.069 4.069 19 S -0.340 6.340 20 C 0.071 3.929 21 C -0.092 4.092 22 H 0.260 0.740 23 H -0.009 1.009 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.018 0.982 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -17.907 7.015 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.059 4.059 12 N -0.265 5.265 13 C -0.055 4.055 14 C -0.146 4.146 15 H 0.101 0.899 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.217 4.217 19 S -0.114 6.114 20 C -0.056 4.056 21 C -0.131 4.131 22 H 0.069 0.931 23 H 0.009 0.991 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.285 -17.255 7.466 19.086 hybrid contribution -1.194 0.919 -0.805 1.709 sum -4.479 -16.336 6.661 18.202 Atomic orbital electron populations 1.70018 1.07106 1.26966 1.51660 1.25727 0.95698 1.02297 0.94823 0.85587 0.79072 0.79854 0.77639 1.19345 1.20434 1.20619 1.21620 0.92934 0.92383 1.50219 0.93330 1.18655 0.93141 0.92562 0.93012 1.21529 0.97991 0.94249 0.99912 1.22009 0.95985 0.98159 0.89713 1.61911 1.23532 1.02850 1.38225 1.22040 0.97963 0.91507 0.93987 1.24024 0.95230 1.01007 0.94346 0.89860 1.22110 1.01773 0.93863 0.98169 1.21958 1.01532 0.99316 0.92904 1.24245 0.99527 0.99308 0.98601 1.88833 1.28204 1.76428 1.17913 1.22027 0.92984 0.91772 0.98851 1.21383 0.99061 0.94774 0.97875 0.93083 0.99124 0.93667 0.92783 0.89742 0.95589 0.89252 0.92826 0.89706 0.89355 0.89731 0.89073 0.89310 0.86974 0.96427 0.91352 0.95768 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.35 11.37 21.45 0.24 -54.10 16 2 C 0.01 0.73 5.31 84.65 0.45 1.18 16 3 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.53 -30.79 8.56 25.60 0.22 -30.57 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.35 2.16 -11.46 -0.02 2.33 16 10 C -0.10 -4.34 5.32 30.65 0.16 -4.17 16 11 C 0.07 2.47 5.46 86.33 0.47 2.94 16 12 N -0.54 -19.17 4.50 -896.35 -4.04 -23.21 16 13 C 0.07 1.97 4.31 86.30 0.37 2.34 16 14 C -0.02 -0.42 3.20 31.02 0.10 -0.32 16 15 H 0.08 2.22 6.37 -2.39 -0.02 2.20 16 16 C -0.12 -1.92 5.93 30.80 0.18 -1.74 16 17 C -0.12 -1.60 6.30 30.80 0.19 -1.40 16 18 C -0.07 -1.23 7.45 72.41 0.54 -0.69 16 19 S -0.34 -9.61 22.65 -56.49 -1.28 -10.89 16 20 C 0.07 2.86 5.30 86.33 0.46 3.31 16 21 C -0.09 -4.65 5.12 30.65 0.16 -4.49 16 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.08 2.60 8.01 -2.39 -0.02 2.58 16 27 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.09 2.22 7.99 -2.39 -0.02 2.21 16 29 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 30 H 0.08 1.23 7.78 -2.38 -0.02 1.21 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 2.54 6.18 -2.39 -0.01 2.53 16 38 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 3.41 6.17 -2.39 -0.01 3.39 16 Total: -1.00 -65.02 310.05 1.23 -63.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.99 Total: 8.60 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 3.28 Total: -31.28 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -3.79 Total: -77.31 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -9.61 SS G_CDS: -1.28 Total: -10.89 kcal Total: -65.02 1.23 -63.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.896 kcal (2) G-P(sol) polarization free energy of solvation -65.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds