Wall clock time and date at job start Mon Mar 30 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48509 * 109.47185 * 240.00030 * 3 2 1 5 5 H 1.48503 * 109.47401 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47208 * 120.00558 * 3 2 1 7 7 C 1.37875 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53117 * 109.52035 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27841 * 182.43929 * 10 9 7 12 12 N 1.46845 * 109.52237 * 59.18152 * 11 10 9 13 13 C 1.46900 * 110.99820 * 174.16012 * 12 11 10 14 14 C 1.53006 * 109.47101 * 169.99579 * 13 12 11 15 15 H 1.08998 * 110.35460 * 299.13470 * 14 13 12 16 16 C 1.54265 * 110.40123 * 176.68364 * 14 13 12 17 17 C 1.53862 * 108.92410 * 213.25546 * 16 14 13 18 18 C 1.55130 * 106.90008 * 47.25606 * 17 16 14 19 19 S 1.83092 * 110.39809 * 61.45302 * 14 13 12 20 20 C 1.46840 * 111.19494 * 298.25610 * 12 11 10 21 21 C 1.53032 * 109.52647 * 61.74591 * 20 12 11 22 22 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.57222 * 300.15410 * 9 7 2 24 24 H 1.09007 * 109.50472 * 62.49802 * 10 9 7 25 25 H 1.09003 * 109.50728 * 302.37924 * 10 9 7 26 26 H 1.08996 * 109.46252 * 299.15748 * 11 10 9 27 27 H 1.09008 * 109.45326 * 179.19216 * 11 10 9 28 28 H 1.08997 * 109.47080 * 50.00063 * 13 12 11 29 29 H 1.09000 * 109.47362 * 289.99857 * 13 12 11 30 30 H 1.08997 * 109.61280 * 333.17196 * 16 14 13 31 31 H 1.09000 * 109.61319 * 93.33497 * 16 14 13 32 32 H 1.08994 * 109.97436 * 287.89234 * 17 16 14 33 33 H 1.09003 * 109.97413 * 166.61732 * 17 16 14 34 34 H 1.08997 * 110.86164 * 199.70702 * 18 17 16 35 35 H 1.09002 * 110.85879 * 76.05919 * 18 17 16 36 36 H 1.09001 * 109.46336 * 181.75935 * 20 12 11 37 37 H 1.08998 * 109.46734 * 301.72704 * 20 12 11 38 38 H 1.08996 * 109.50885 * 180.88070 * 21 20 12 39 39 H 1.08997 * 109.54060 * 60.77598 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2449 -3.6638 -0.0005 11 6 1.4751 -4.9850 -0.0620 12 7 0.6543 -5.0186 -1.2792 13 6 0.0082 -6.3277 -1.4425 14 6 -1.0244 -6.2498 -2.5689 15 1 -1.7934 -5.5157 -2.3282 16 6 -1.6577 -7.6349 -2.8146 17 6 -1.9833 -7.7762 -4.3117 18 6 -0.7248 -7.3146 -5.0925 19 16 -0.2102 -5.8253 -4.1528 20 6 -0.3394 -3.9375 -1.2794 21 6 0.3762 -2.5850 -1.2543 22 1 -0.4850 0.8401 0.0004 23 1 0.6220 -2.5576 0.8877 24 1 2.8421 -3.6326 0.9109 25 1 2.8998 -3.5835 -0.8683 26 1 0.8309 -5.0711 0.8130 27 1 2.1806 -5.8159 -0.0766 28 1 -0.4885 -6.6062 -0.5130 29 1 0.7608 -7.0760 -1.6906 30 1 -0.9573 -8.4153 -2.5173 31 1 -2.5735 -7.7272 -2.2307 32 1 -2.8336 -7.1447 -4.5690 33 1 -2.2070 -8.8166 -4.5475 34 1 -0.9789 -7.0563 -6.1204 35 1 0.0517 -8.0790 -5.0638 36 1 -0.9520 -4.0075 -2.1782 37 1 -0.9752 -4.0283 -0.3988 38 1 -0.3618 -1.7830 -1.2387 39 1 1.0015 -2.4869 -2.1416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:27 Heat of formation + Delta-G solvation = -12.293720 kcal Electronic energy + Delta-G solvation = -17462.271483 eV Core-core repulsion = 14916.013719 eV Total energy + Delta-G solvation = -2546.257764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.48756 -36.26986 -33.92595 -31.77328 -29.83682 -29.49967 -26.46912 -24.90081 -22.95910 -22.11363 -21.10739 -20.32547 -18.55152 -16.53989 -16.34342 -15.70708 -15.35278 -14.44085 -14.22282 -14.17424 -13.86822 -13.10972 -13.00629 -12.66590 -12.36506 -12.33190 -11.83157 -11.62233 -11.53963 -11.15873 -11.10488 -10.84787 -10.78447 -10.66562 -10.36467 -10.13398 -9.90713 -9.63359 -9.33049 -8.88413 -8.62362 -8.22309 -7.64233 -7.39765 -5.90768 -3.95759 1.95031 2.58214 3.37622 3.41695 3.44960 4.26715 4.50872 4.52651 4.65885 4.81265 4.94723 5.12904 5.31149 5.39401 5.45837 5.46929 5.58335 5.68625 5.69522 5.81636 5.86244 5.95320 6.04782 6.19139 6.26600 6.38627 6.69339 6.70290 6.93093 7.15622 7.25475 7.52140 7.69095 7.76243 7.90383 8.13280 8.23475 8.55777 9.07566 9.68197 11.15465 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.004961 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.669326 B = 5642.569210 C = 5922.296903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.526 5.526 13 C 0.071 3.929 14 C -0.049 4.049 15 H 0.102 0.898 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.095 4.095 19 S -0.237 6.237 20 C 0.051 3.949 21 C -0.102 4.102 22 H 0.259 0.741 23 H 0.019 0.981 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.091 0.909 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 -16.175 -6.180 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.251 5.251 13 C -0.059 4.059 14 C -0.178 4.178 15 H 0.120 0.880 16 C -0.165 4.165 17 C -0.164 4.164 18 C -0.244 4.244 19 S -0.011 6.011 20 C -0.076 4.076 21 C -0.140 4.140 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.679 -15.014 -6.900 16.928 hybrid contribution -0.818 -0.204 1.059 1.353 sum -4.497 -15.218 -5.841 16.909 Atomic orbital electron populations 1.69872 1.05868 1.26323 1.51163 1.24959 0.94824 0.98949 0.95242 0.86703 0.79630 0.83362 0.78552 1.20289 1.21400 1.20421 1.21179 0.92837 0.90715 1.50050 0.92838 1.18676 0.92699 0.91729 0.93918 1.21669 0.98724 0.93713 1.00246 1.22103 0.95781 0.99360 0.89332 1.62080 1.23431 1.01444 1.38144 1.22147 0.95135 0.93663 0.94931 1.24012 0.99416 0.99175 0.95203 0.87953 1.22386 1.01576 0.96002 0.96555 1.22528 0.97689 1.02316 0.93865 1.24298 0.99657 0.98810 1.01597 1.88205 1.72538 1.29855 1.10484 1.22398 0.93375 0.93371 0.98445 1.21624 1.00129 0.92855 0.99373 0.93115 0.96321 0.93287 0.92400 0.95985 0.92499 0.94843 0.90610 0.90693 0.90206 0.90500 0.90331 0.88486 0.89634 0.92116 0.96337 0.89114 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 11.37 55.43 0.63 -25.35 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.37 8.56 -34.44 -0.29 -14.67 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 10 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 11 C 0.06 1.15 5.42 -3.83 -0.02 1.13 16 12 N -0.53 -9.68 4.46 -234.68 -1.05 -10.72 16 13 C 0.07 1.04 4.67 -3.82 -0.02 1.02 16 14 C -0.05 -0.65 2.57 -26.07 -0.07 -0.72 16 15 H 0.10 1.45 6.32 -51.93 -0.33 1.13 16 16 C -0.13 -1.21 5.94 -25.62 -0.15 -1.36 16 17 C -0.13 -1.08 6.46 -25.16 -0.16 -1.24 16 18 C -0.10 -0.97 7.38 38.28 0.28 -0.68 16 19 S -0.24 -3.51 21.88 -107.50 -2.35 -5.86 16 20 C 0.05 1.04 4.82 -3.84 -0.02 1.02 16 21 C -0.10 -2.50 5.12 -26.65 -0.14 -2.63 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.94 8.12 -51.92 -0.42 0.51 16 28 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.17 5.44 -51.93 -0.28 0.89 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 39 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -29.47 307.97 -10.96 -40.43 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.79 Total: -1.98 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.02 Total: -17.91 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.42 Total: -36.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.35 Total: -5.86 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.47 -10.96 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.140 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds