Wall clock time and date at job start Mon Mar 30 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48509 * 109.47185 * 240.00030 * 3 2 1 5 5 H 1.48503 * 109.47401 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47208 * 120.00558 * 3 2 1 7 7 C 1.37875 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53117 * 109.52035 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27841 * 182.43929 * 10 9 7 12 12 N 1.46845 * 109.52237 * 59.18152 * 11 10 9 13 13 C 1.46900 * 110.99820 * 174.16012 * 12 11 10 14 14 C 1.53006 * 109.47101 * 169.99579 * 13 12 11 15 15 H 1.08998 * 110.35460 * 299.13470 * 14 13 12 16 16 C 1.54265 * 110.40123 * 176.68364 * 14 13 12 17 17 C 1.53862 * 108.92410 * 213.25546 * 16 14 13 18 18 C 1.55130 * 106.90008 * 47.25606 * 17 16 14 19 19 S 1.83092 * 110.39809 * 61.45302 * 14 13 12 20 20 C 1.46840 * 111.19494 * 298.25610 * 12 11 10 21 21 C 1.53032 * 109.52647 * 61.74591 * 20 12 11 22 22 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.57222 * 300.15410 * 9 7 2 24 24 H 1.09007 * 109.50472 * 62.49802 * 10 9 7 25 25 H 1.09003 * 109.50728 * 302.37924 * 10 9 7 26 26 H 1.08996 * 109.46252 * 299.15748 * 11 10 9 27 27 H 1.09008 * 109.45326 * 179.19216 * 11 10 9 28 28 H 1.08997 * 109.47080 * 50.00063 * 13 12 11 29 29 H 1.09000 * 109.47362 * 289.99857 * 13 12 11 30 30 H 1.08997 * 109.61280 * 333.17196 * 16 14 13 31 31 H 1.09000 * 109.61319 * 93.33497 * 16 14 13 32 32 H 1.08994 * 109.97436 * 287.89234 * 17 16 14 33 33 H 1.09003 * 109.97413 * 166.61732 * 17 16 14 34 34 H 1.08997 * 110.86164 * 199.70702 * 18 17 16 35 35 H 1.09002 * 110.85879 * 76.05919 * 18 17 16 36 36 H 1.09001 * 109.46336 * 181.75935 * 20 12 11 37 37 H 1.08998 * 109.46734 * 301.72704 * 20 12 11 38 38 H 1.08996 * 109.50885 * 180.88070 * 21 20 12 39 39 H 1.08997 * 109.54060 * 60.77598 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2449 -3.6638 -0.0005 11 6 1.4751 -4.9850 -0.0620 12 7 0.6543 -5.0186 -1.2792 13 6 0.0082 -6.3277 -1.4425 14 6 -1.0244 -6.2498 -2.5689 15 1 -1.7934 -5.5157 -2.3282 16 6 -1.6577 -7.6349 -2.8146 17 6 -1.9833 -7.7762 -4.3117 18 6 -0.7248 -7.3146 -5.0925 19 16 -0.2102 -5.8253 -4.1528 20 6 -0.3394 -3.9375 -1.2794 21 6 0.3762 -2.5850 -1.2543 22 1 -0.4850 0.8401 0.0004 23 1 0.6220 -2.5576 0.8877 24 1 2.8421 -3.6326 0.9109 25 1 2.8998 -3.5835 -0.8683 26 1 0.8309 -5.0711 0.8130 27 1 2.1806 -5.8159 -0.0766 28 1 -0.4885 -6.6062 -0.5130 29 1 0.7608 -7.0760 -1.6906 30 1 -0.9573 -8.4153 -2.5173 31 1 -2.5735 -7.7272 -2.2307 32 1 -2.8336 -7.1447 -4.5690 33 1 -2.2070 -8.8166 -4.5475 34 1 -0.9789 -7.0563 -6.1204 35 1 0.0517 -8.0790 -5.0638 36 1 -0.9520 -4.0075 -2.1782 37 1 -0.9752 -4.0283 -0.3988 38 1 -0.3618 -1.7830 -1.2387 39 1 1.0015 -2.4869 -2.1416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:27 Heat of formation + Delta-G solvation = -29.116512 kcal Electronic energy + Delta-G solvation = -17463.000974 eV Core-core repulsion = 14916.013719 eV Total energy + Delta-G solvation = -2546.987255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02119 -37.32186 -35.61417 -33.53142 -31.55691 -30.84787 -27.97484 -26.30139 -24.49851 -23.68486 -22.40517 -21.41377 -20.36958 -18.45255 -17.58122 -16.96330 -16.63711 -16.33379 -15.65564 -15.27596 -14.98851 -14.76928 -14.48722 -14.07757 -14.03840 -13.70450 -13.28643 -12.86900 -12.84035 -12.63146 -12.47764 -12.35198 -12.12923 -12.00153 -11.95494 -11.84457 -11.70691 -11.32586 -10.80249 -10.64745 -10.58789 -10.36776 -9.09884 -8.54334 -8.07929 -6.21404 0.97824 1.40367 1.42498 1.49850 1.65926 2.43775 3.02236 3.18825 3.63764 3.74409 3.98881 4.07799 4.19923 4.24130 4.31140 4.38166 4.46211 4.51533 4.62651 4.68995 4.76486 4.77083 4.89766 4.95373 4.96447 4.99445 5.00655 5.10900 5.23509 5.24242 5.33755 5.56553 5.62378 5.99885 6.02355 6.30037 6.35504 6.41045 6.89772 7.46122 8.96637 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.004961 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.669326 B = 5642.569210 C = 5922.296903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.099 4.099 11 C 0.068 3.932 12 N -0.537 5.537 13 C 0.073 3.927 14 C -0.036 4.036 15 H 0.087 0.913 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.073 4.073 19 S -0.333 6.333 20 C 0.069 3.931 21 C -0.091 4.091 22 H 0.260 0.740 23 H -0.011 1.011 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.013 0.987 38 H 0.058 0.942 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -18.426 -6.502 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.060 4.060 12 N -0.261 5.261 13 C -0.056 4.056 14 C -0.165 4.165 15 H 0.105 0.895 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.221 4.221 19 S -0.107 6.107 20 C -0.058 4.058 21 C -0.129 4.129 22 H 0.069 0.931 23 H 0.007 0.993 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.801 -17.285 -7.222 19.115 hybrid contribution -0.783 0.463 1.126 1.448 sum -4.584 -16.822 -6.096 18.470 Atomic orbital electron populations 1.70016 1.07181 1.27101 1.51507 1.25750 0.95696 1.02382 0.94796 0.85686 0.78465 0.79157 0.78796 1.19869 1.20804 1.19508 1.21568 0.92970 0.92353 1.50446 0.93182 1.18645 0.93144 0.92691 0.92838 1.21532 0.97974 0.94181 1.00012 1.22034 0.96126 0.98255 0.89577 1.61996 1.23364 1.02777 1.38011 1.22236 0.95858 0.91436 0.96108 1.23964 0.98278 1.01102 0.93172 0.89525 1.22410 1.02279 0.93663 0.97598 1.22538 0.96580 1.03968 0.92726 1.24380 1.00567 0.95836 1.01293 1.88499 1.73774 1.34516 1.13891 1.22060 0.93209 0.91987 0.98570 1.21364 0.99002 0.94706 0.97878 0.93096 0.99311 0.92697 0.93465 0.95814 0.89384 0.93344 0.89226 0.89382 0.88530 0.90740 0.87263 0.87558 0.88403 0.91281 0.96906 0.92342 0.95895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 11.37 21.45 0.24 -54.82 16 2 C 0.01 0.70 5.31 84.65 0.45 1.15 16 3 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.08 8.56 25.60 0.22 -30.87 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.05 2.41 2.16 -11.46 -0.02 2.38 16 10 C -0.10 -4.35 5.32 30.65 0.16 -4.19 16 11 C 0.07 2.43 5.42 86.33 0.47 2.90 16 12 N -0.54 -19.31 4.46 -896.38 -4.00 -23.30 16 13 C 0.07 1.95 4.67 86.31 0.40 2.35 16 14 C -0.04 -0.90 2.57 31.03 0.08 -0.82 16 15 H 0.09 2.39 6.32 -2.39 -0.02 2.38 16 16 C -0.12 -1.89 5.94 31.31 0.19 -1.70 16 17 C -0.12 -1.62 6.46 31.62 0.20 -1.42 16 18 C -0.07 -1.29 7.38 72.71 0.54 -0.75 16 19 S -0.33 -9.64 21.88 -56.49 -1.24 -10.87 16 20 C 0.07 2.87 4.82 86.33 0.42 3.29 16 21 C -0.09 -4.68 5.12 30.64 0.16 -4.52 16 22 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 23 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 24 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 2.64 8.12 -2.38 -0.02 2.63 16 28 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 29 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 30 H 0.09 1.19 7.83 -2.39 -0.02 1.17 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 2.74 5.44 -2.39 -0.01 2.72 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 3.35 6.17 -2.39 -0.01 3.34 16 39 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.14 307.97 1.29 -64.85 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.99 Total: 8.99 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.26 Total: -32.19 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.75 Total: -78.12 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: -9.64 SS G_CDS: -1.24 Total: -10.87 kcal Total: -66.14 1.29 -64.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.737 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds