Wall clock time and date at job start Mon Mar 30 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46992 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47050 * 29.99803 * 3 2 1 6 6 H 1.48503 * 109.46697 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99961 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.62466 * 56.90135 * 9 7 2 11 11 C 1.55134 * 110.70685 * 293.60222 * 9 7 2 12 12 C 1.54907 * 101.65522 * 205.96226 * 11 9 7 13 13 N 1.47845 * 104.79156 * 37.07020 * 12 11 9 14 14 C 1.46902 * 111.00093 * 213.63582 * 13 12 11 15 15 C 1.53000 * 109.47299 * 285.29927 * 14 13 12 16 16 H 1.08996 * 109.39121 * 54.82039 * 15 14 13 17 17 C 1.52582 * 109.30593 * 295.07207 * 15 14 13 18 18 C 1.52583 * 110.72458 * 169.22409 * 17 15 14 19 19 C 1.53099 * 109.95426 * 70.67906 * 18 17 15 20 20 S 1.81796 * 108.93839 * 297.04556 * 19 18 17 21 21 C 1.53100 * 109.39207 * 174.63143 * 15 14 13 22 22 C 1.47448 * 108.56961 * 335.90549 * 13 12 11 23 23 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.99531 * 324.05614 * 11 9 7 25 25 H 1.09007 * 110.99083 * 87.87436 * 11 9 7 26 26 H 1.09000 * 110.37390 * 278.24745 * 12 11 9 27 27 H 1.08998 * 110.37668 * 155.90039 * 12 11 9 28 28 H 1.08995 * 109.47560 * 165.29604 * 14 13 12 29 29 H 1.09000 * 109.46762 * 45.29689 * 14 13 12 30 30 H 1.08997 * 109.22667 * 289.54633 * 17 15 14 31 31 H 1.09003 * 109.22723 * 48.94793 * 17 15 14 32 32 H 1.08999 * 109.38782 * 190.81878 * 18 17 15 33 33 H 1.08996 * 109.39401 * 310.62592 * 18 17 15 34 34 H 1.08999 * 109.58028 * 56.77777 * 19 18 17 35 35 H 1.09005 * 109.57616 * 177.03790 * 19 18 17 36 36 H 1.09004 * 109.56915 * 302.87767 * 21 15 14 37 37 H 1.08997 * 109.57706 * 63.13066 * 21 15 14 38 38 H 1.09003 * 109.88413 * 120.39816 * 22 13 12 39 39 H 1.08998 * 109.88757 * 241.41845 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5763 -2.5530 -0.8549 11 6 0.4741 -2.6840 1.3295 12 6 0.3737 -4.2271 1.4214 13 7 1.6623 -4.7215 0.8914 14 6 1.4857 -5.9954 0.1816 15 6 1.2740 -7.1200 1.1972 16 1 0.4409 -6.8644 1.8518 17 6 2.5399 -7.2910 2.0318 18 6 2.2822 -8.2112 3.2213 19 6 2.0934 -9.6511 2.7366 20 16 0.6203 -9.7276 1.6739 21 6 0.9573 -8.4215 0.4558 22 6 2.2284 -3.6934 -0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 1.0371 -2.2786 2.1702 25 1 -0.5156 -2.2313 1.2697 26 1 -0.4524 -4.5907 0.8102 27 1 0.2454 -4.5380 2.4582 28 1 2.3742 -6.2060 -0.4136 29 1 0.6170 -5.9290 -0.4733 30 1 3.3250 -7.7202 1.4093 31 1 2.8638 -6.3162 2.3965 32 1 3.1314 -8.1675 3.9032 33 1 1.3822 -7.8854 3.7427 34 1 2.9688 -9.9626 2.1668 35 1 1.9622 -10.3110 3.5943 36 1 0.0815 -8.2775 -0.1769 37 1 1.8098 -8.7077 -0.1602 38 1 3.2026 -3.3755 0.3703 39 1 2.3289 -4.0930 -1.0102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260316372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:56 Heat of formation + Delta-G solvation = -19.800341 kcal Electronic energy + Delta-G solvation = -17300.890558 eV Core-core repulsion = 14754.307282 eV Total energy + Delta-G solvation = -2546.583275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.66731 -36.66101 -33.33597 -32.12826 -29.76550 -28.25796 -27.18140 -25.45731 -23.80741 -22.01941 -20.66486 -19.56513 -19.44093 -16.75846 -16.52014 -15.33648 -15.00984 -14.90684 -14.42566 -14.29589 -13.56966 -13.45173 -13.13973 -12.86908 -12.56326 -12.48822 -11.81437 -11.60405 -11.41526 -11.27188 -11.07679 -11.02607 -10.71553 -10.67876 -10.51392 -10.31730 -10.12525 -9.70820 -9.64248 -9.26984 -8.87681 -8.40464 -7.77110 -7.61802 -6.03791 -4.06379 1.70028 2.43325 3.29577 3.36536 3.39879 4.41474 4.51182 4.62067 4.74112 4.83164 5.09453 5.13738 5.19821 5.29458 5.38287 5.58332 5.59547 5.60768 5.71803 5.84453 5.94985 6.00813 6.08099 6.15333 6.24184 6.34322 6.41940 6.42812 6.60009 6.85578 7.13603 7.18147 7.57193 7.60712 7.79696 7.88621 7.98268 8.40210 8.95510 9.57767 11.06325 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.053815 B = 0.004068 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.175867 B = 6880.949057 C = 6999.885698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.034 3.966 10 H 0.030 0.970 11 C -0.105 4.105 12 C 0.038 3.962 13 N -0.530 5.530 14 C 0.059 3.941 15 C -0.081 4.081 16 H 0.082 0.918 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.078 4.078 20 S -0.279 6.279 21 C -0.072 4.072 22 C 0.048 3.952 23 H 0.260 0.740 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -16.397 3.656 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.015 3.985 10 H 0.048 0.952 11 C -0.143 4.143 12 C -0.090 4.090 13 N -0.254 5.254 14 C -0.072 4.072 15 C -0.101 4.101 16 H 0.101 0.899 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.227 4.227 20 S -0.052 6.052 21 C -0.221 4.221 22 C -0.079 4.079 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.117 -17.095 4.141 17.716 hybrid contribution 0.845 1.776 -0.858 2.146 sum 2.962 -15.319 3.283 15.944 Atomic orbital electron populations 1.69959 1.05944 1.26526 1.50475 1.24979 0.94834 0.99091 0.95004 0.86612 0.79931 0.83518 0.78056 1.20745 1.21264 1.19849 1.21081 0.92768 0.90219 1.50867 0.92487 1.19805 0.92860 0.92106 0.93715 0.95235 1.22630 1.01340 0.90255 1.00109 1.23158 0.89356 0.98138 0.98344 1.63537 1.24465 1.02574 1.34776 1.22281 1.00016 0.90481 0.94421 1.21307 0.99256 0.92336 0.97197 0.89938 1.21486 0.96851 1.01202 0.95923 1.21745 1.02849 0.92725 0.98727 1.23458 0.97520 1.00873 1.00821 1.86797 1.32598 1.49541 1.36274 1.23508 1.05223 0.95302 0.98079 1.22997 0.99971 0.92194 0.92746 0.93051 0.92515 0.91344 0.94990 0.92174 0.91580 0.94905 0.92626 0.88966 0.91044 0.90728 0.90160 0.88271 0.88058 0.90017 0.91338 0.94973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 12.49 55.43 0.69 -24.76 16 2 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.88 8.47 -34.44 -0.29 -14.18 16 8 H 0.06 1.53 7.53 -52.49 -0.40 1.13 16 9 C 0.03 0.85 2.78 -89.95 -0.25 0.60 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.10 -2.41 5.94 -24.60 -0.15 -2.56 16 12 C 0.04 0.71 5.99 -2.30 -0.01 0.70 16 13 N -0.53 -9.52 4.38 -231.25 -1.01 -10.53 16 14 C 0.06 0.87 4.05 -3.82 -0.02 0.85 16 15 C -0.08 -1.01 2.10 -90.78 -0.19 -1.20 16 16 H 0.08 1.15 7.48 -51.93 -0.39 0.76 16 17 C -0.12 -1.37 4.90 -27.16 -0.13 -1.51 16 18 C -0.12 -1.23 5.76 -26.89 -0.15 -1.38 16 19 C -0.08 -0.75 6.45 37.21 0.24 -0.51 16 20 S -0.28 -3.24 22.34 -107.50 -2.40 -5.64 16 21 C -0.07 -0.81 5.73 37.21 0.21 -0.60 16 22 C 0.05 0.99 6.43 -2.84 -0.02 0.97 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.06 1.36 8.04 -51.93 -0.42 0.95 16 25 H 0.07 1.69 7.76 -51.93 -0.40 1.29 16 26 H 0.03 0.59 7.53 -51.93 -0.39 0.20 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 29 H 0.03 0.50 7.69 -51.93 -0.40 0.10 16 30 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.09 1.26 7.44 -51.93 -0.39 0.87 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.46 7.63 -51.93 -0.40 1.07 16 39 H 0.03 0.63 7.47 -51.93 -0.39 0.24 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -27.58 311.88 -10.80 -38.39 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.90 Total: -1.11 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.86 Total: -17.18 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.32 Total: -35.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.40 Total: -5.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.58 -10.80 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.588 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds