Wall clock time and date at job start Mon Mar 30 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46992 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47050 * 29.99803 * 3 2 1 6 6 H 1.48503 * 109.46697 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99961 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.62466 * 56.90135 * 9 7 2 11 11 C 1.55134 * 110.70685 * 293.60222 * 9 7 2 12 12 C 1.54907 * 101.65522 * 205.96226 * 11 9 7 13 13 N 1.47845 * 104.79156 * 37.07020 * 12 11 9 14 14 C 1.46902 * 111.00093 * 213.63582 * 13 12 11 15 15 C 1.53000 * 109.47299 * 285.29927 * 14 13 12 16 16 H 1.08996 * 109.39121 * 54.82039 * 15 14 13 17 17 C 1.52582 * 109.30593 * 295.07207 * 15 14 13 18 18 C 1.52583 * 110.72458 * 169.22409 * 17 15 14 19 19 C 1.53099 * 109.95426 * 70.67906 * 18 17 15 20 20 S 1.81796 * 108.93839 * 297.04556 * 19 18 17 21 21 C 1.53100 * 109.39207 * 174.63143 * 15 14 13 22 22 C 1.47448 * 108.56961 * 335.90549 * 13 12 11 23 23 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.99531 * 324.05614 * 11 9 7 25 25 H 1.09007 * 110.99083 * 87.87436 * 11 9 7 26 26 H 1.09000 * 110.37390 * 278.24745 * 12 11 9 27 27 H 1.08998 * 110.37668 * 155.90039 * 12 11 9 28 28 H 1.08995 * 109.47560 * 165.29604 * 14 13 12 29 29 H 1.09000 * 109.46762 * 45.29689 * 14 13 12 30 30 H 1.08997 * 109.22667 * 289.54633 * 17 15 14 31 31 H 1.09003 * 109.22723 * 48.94793 * 17 15 14 32 32 H 1.08999 * 109.38782 * 190.81878 * 18 17 15 33 33 H 1.08996 * 109.39401 * 310.62592 * 18 17 15 34 34 H 1.08999 * 109.58028 * 56.77777 * 19 18 17 35 35 H 1.09005 * 109.57616 * 177.03790 * 19 18 17 36 36 H 1.09004 * 109.56915 * 302.87767 * 21 15 14 37 37 H 1.08997 * 109.57706 * 63.13066 * 21 15 14 38 38 H 1.09003 * 109.88413 * 120.39816 * 22 13 12 39 39 H 1.08998 * 109.88757 * 241.41845 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5763 -2.5530 -0.8549 11 6 0.4741 -2.6840 1.3295 12 6 0.3737 -4.2271 1.4214 13 7 1.6623 -4.7215 0.8914 14 6 1.4857 -5.9954 0.1816 15 6 1.2740 -7.1200 1.1972 16 1 0.4409 -6.8644 1.8518 17 6 2.5399 -7.2910 2.0318 18 6 2.2822 -8.2112 3.2213 19 6 2.0934 -9.6511 2.7366 20 16 0.6203 -9.7276 1.6739 21 6 0.9573 -8.4215 0.4558 22 6 2.2284 -3.6934 -0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 1.0371 -2.2786 2.1702 25 1 -0.5156 -2.2313 1.2697 26 1 -0.4524 -4.5907 0.8102 27 1 0.2454 -4.5380 2.4582 28 1 2.3742 -6.2060 -0.4136 29 1 0.6170 -5.9290 -0.4733 30 1 3.3250 -7.7202 1.4093 31 1 2.8638 -6.3162 2.3965 32 1 3.1314 -8.1675 3.9032 33 1 1.3822 -7.8854 3.7427 34 1 2.9688 -9.9626 2.1668 35 1 1.9622 -10.3110 3.5943 36 1 0.0815 -8.2775 -0.1769 37 1 1.8098 -8.7077 -0.1602 38 1 3.2026 -3.3755 0.3703 39 1 2.3289 -4.0930 -1.0102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260316372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:56 Heat of formation + Delta-G solvation = -34.145004 kcal Electronic energy + Delta-G solvation = -17301.512589 eV Core-core repulsion = 14754.307282 eV Total energy + Delta-G solvation = -2547.205307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09708 -37.86940 -35.05780 -33.46040 -31.31572 -30.01441 -28.07224 -27.00747 -25.49413 -22.96913 -22.05828 -21.33183 -20.74144 -18.57606 -17.73046 -16.70001 -16.36256 -16.25254 -15.94398 -15.53982 -14.69526 -14.55573 -14.28629 -14.23533 -14.07273 -13.73503 -13.39731 -13.01190 -12.93004 -12.77354 -12.59760 -12.42550 -12.21492 -12.12040 -11.93362 -11.67256 -11.46591 -11.27019 -11.10789 -10.90968 -10.55370 -10.49255 -9.13372 -8.66401 -8.14692 -6.24248 0.86311 1.41242 1.42220 1.52569 1.60194 2.42688 3.15053 3.17355 3.69141 3.86592 3.95819 4.06055 4.17357 4.21725 4.30261 4.38956 4.50162 4.54317 4.56724 4.62835 4.71468 4.73574 4.84407 4.91531 4.94067 5.01158 5.14468 5.17739 5.27541 5.35980 5.42876 5.48639 5.58142 5.71968 5.87657 6.16154 6.31209 6.36366 6.84975 7.43492 8.94937 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.053815 B = 0.004068 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.175867 B = 6880.949057 C = 6999.885698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.025 3.975 10 H -0.003 1.003 11 C -0.098 4.098 12 C 0.052 3.948 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.071 4.071 16 H 0.069 0.931 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.069 4.069 20 S -0.311 6.311 21 C -0.064 4.064 22 C 0.060 3.940 23 H 0.260 0.740 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -17.676 4.074 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.016 0.984 11 C -0.137 4.137 12 C -0.076 4.076 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.092 4.092 16 H 0.087 0.913 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.216 4.216 20 S -0.084 6.084 21 C -0.213 4.213 22 C -0.068 4.068 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.403 -18.393 4.559 19.252 hybrid contribution 0.438 2.147 -0.993 2.406 sum 3.841 -16.246 3.566 17.070 Atomic orbital electron populations 1.70086 1.07345 1.27285 1.51347 1.25769 0.95640 1.02519 0.94695 0.85594 0.78798 0.79285 0.78232 1.20127 1.21030 1.19075 1.21453 0.92999 0.91628 1.50665 0.92549 1.19785 0.93322 0.93179 0.93139 0.98439 1.22417 0.99317 0.93308 0.98686 1.23013 0.90015 0.94849 0.99698 1.63545 1.23743 1.02994 1.34577 1.22376 1.00444 0.89383 0.94959 1.21188 0.99303 0.92124 0.96543 0.91268 1.21434 0.96464 1.00720 0.96529 1.21691 1.03086 0.92646 0.98166 1.23508 0.96541 1.00704 1.00888 1.86957 1.34585 1.49608 1.37260 1.23420 1.05800 0.94209 0.97844 1.22757 0.98629 0.91478 0.93899 0.93076 0.94009 0.93881 0.94579 0.90286 0.90384 0.95267 0.91690 0.90864 0.89393 0.91684 0.88955 0.86789 0.87982 0.88795 0.91916 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.84 12.49 21.45 0.27 -53.58 16 2 C 0.01 0.70 5.36 84.65 0.45 1.15 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -29.19 8.47 25.60 0.22 -28.97 16 8 H 0.06 3.04 7.53 -2.91 -0.02 3.02 16 9 C 0.03 1.26 2.78 -10.36 -0.03 1.23 16 10 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 11 C -0.10 -4.65 5.94 31.98 0.19 -4.46 16 12 C 0.05 1.93 5.99 86.77 0.52 2.45 16 13 N -0.52 -18.30 4.38 -885.54 -3.88 -22.18 16 14 C 0.06 1.62 4.05 86.30 0.35 1.97 16 15 C -0.07 -1.64 2.10 -10.90 -0.02 -1.67 16 16 H 0.07 1.81 7.48 -2.39 -0.02 1.79 16 17 C -0.11 -2.40 4.90 30.32 0.15 -2.25 16 18 C -0.12 -2.05 5.76 30.49 0.18 -1.88 16 19 C -0.07 -1.10 6.45 72.02 0.46 -0.64 16 20 S -0.31 -6.60 22.34 -56.49 -1.26 -7.86 16 21 C -0.06 -1.30 5.73 72.02 0.41 -0.88 16 22 C 0.06 2.46 6.43 86.64 0.56 3.02 16 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 25 H 0.04 2.21 7.76 -2.38 -0.02 2.19 16 26 H 0.04 1.32 7.53 -2.39 -0.02 1.30 16 27 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 29 H 0.03 0.85 7.69 -2.39 -0.02 0.83 16 30 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.07 1.86 7.44 -2.39 -0.02 1.84 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.28 8.06 -2.39 -0.02 1.26 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.65 7.63 -2.39 -0.02 2.63 16 39 H 0.04 1.65 7.47 -2.39 -0.02 1.63 16 Total: -1.00 -59.46 311.88 1.58 -57.88 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.99 Total: 11.01 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.44 Total: -30.92 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -3.61 Total: -75.75 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -1.26 Total: -7.86 kcal Total: -59.46 1.58 -57.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.740 kcal (2) G-P(sol) polarization free energy of solvation -59.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds