Wall clock time and date at job start Mon Mar 30 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46962 * 2 1 4 4 C 1.53001 * 109.47047 * 239.99838 * 2 1 3 5 5 O 1.45204 * 109.46907 * 119.99972 * 2 1 3 6 6 C 1.34632 * 116.99850 * 59.99573 * 5 2 1 7 7 O 1.21511 * 120.00579 * 0.02562 * 6 5 2 8 8 N 1.34788 * 119.99671 * 179.97438 * 6 5 2 9 9 C 1.47016 * 125.64854 * 0.05019 * 8 6 5 10 10 C 1.54315 * 107.27215 * 181.02479 * 9 8 6 11 11 C 1.55160 * 102.94571 * 22.18661 * 10 9 8 12 12 C 1.52999 * 111.03509 * 82.58908 * 11 10 9 13 13 C 1.50701 * 111.00657 * 206.43173 * 11 10 9 14 14 H 1.08002 * 119.99761 * 353.64281 * 13 11 10 15 15 C 1.37871 * 119.99694 * 173.92844 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.47420 * 125.64627 * 179.97438 * 8 6 5 22 22 H 1.08999 * 109.46783 * 300.00551 * 1 2 3 23 23 H 1.09000 * 109.47116 * 59.99892 * 1 2 3 24 24 H 1.08999 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46605 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47388 * 299.99527 * 3 2 1 27 27 H 1.08996 * 109.47317 * 60.00103 * 3 2 1 28 28 H 1.08998 * 109.46792 * 299.99973 * 4 2 1 29 29 H 1.08996 * 109.47169 * 59.99709 * 4 2 1 30 30 H 1.08999 * 109.46970 * 180.02562 * 4 2 1 31 31 H 1.09011 * 109.88182 * 300.43735 * 9 8 6 32 32 H 1.08998 * 109.88725 * 61.44399 * 9 8 6 33 33 H 1.09005 * 110.71504 * 263.82773 * 10 9 8 34 34 H 1.09003 * 110.72810 * 140.55504 * 10 9 8 35 35 H 1.08998 * 109.47056 * 183.20367 * 12 11 10 36 36 H 1.09004 * 109.47176 * 303.20831 * 12 11 10 37 37 H 1.09000 * 109.46860 * 63.20623 * 12 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.09006 * 110.36825 * 37.07820 * 21 8 6 40 40 H 1.08998 * 110.46533 * 274.79666 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9722 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0680 -2.6657 2.4168 9 6 2.9150 -2.1416 3.4981 10 6 3.1510 -3.2953 4.4954 11 6 2.8926 -4.5588 3.6327 12 6 4.1338 -4.9320 2.8198 13 6 2.4433 -5.7148 4.4888 14 1 2.4404 -5.6208 5.5647 15 6 2.0416 -6.8943 3.8986 16 7 2.0452 -7.0087 2.5885 17 14 1.4921 -8.3299 4.9600 18 1 1.5803 -7.9487 6.3925 19 1 0.0887 -8.6832 4.6268 20 1 2.3709 -9.4994 4.7044 21 6 1.7474 -4.0748 2.7081 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 -1.7489 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 3.8678 -1.8024 3.0914 32 1 2.4098 -1.3146 3.9971 33 1 2.4426 -3.2413 5.3221 34 1 4.1768 -3.2830 4.8638 35 1 3.9071 -5.7863 2.1820 36 1 4.4310 -4.0853 2.2009 37 1 4.9477 -5.1902 3.4973 38 1 1.7629 -7.8387 2.1733 39 1 1.7310 -4.6583 1.7875 40 1 0.7884 -4.1494 3.2208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:15 Heat of formation + Delta-G solvation = -88.837861 kcal Electronic energy + Delta-G solvation = -20280.426475 eV Core-core repulsion = 17288.096637 eV Total energy + Delta-G solvation = -2992.329838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25198 -38.18014 -36.05737 -33.90664 -33.10188 -30.87852 -28.45279 -27.31174 -27.22588 -25.72519 -25.14137 -22.71513 -20.98909 -18.89925 -18.81110 -17.24248 -16.19840 -16.15851 -15.63252 -14.74604 -14.48350 -14.37447 -13.88174 -13.53056 -12.79416 -12.68530 -12.50917 -12.39555 -12.05504 -11.85640 -11.74032 -11.60924 -11.51268 -11.23430 -11.06960 -11.00951 -10.91595 -10.74864 -10.49637 -10.22134 -10.05426 -9.67433 -9.50661 -9.20603 -8.87609 -8.52738 -7.84005 -6.08395 -4.16566 2.71642 3.26784 3.35668 3.38323 3.46802 4.35784 4.51146 4.86460 4.89036 5.04508 5.20606 5.51442 5.57584 5.61338 5.65214 5.75485 5.77138 5.82949 5.95259 5.99587 6.04281 6.22991 6.45566 6.46847 6.51513 6.61519 6.76130 6.81993 6.93925 6.97425 7.04826 7.16370 7.38303 7.58819 7.75119 8.03070 8.30735 8.32197 8.84238 8.99292 9.49843 10.97113 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.036984 B = 0.005471 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.900937 B = 5116.922638 C = 5397.869211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.369 6.369 6 C 0.657 3.343 7 O -0.577 6.577 8 N -0.598 5.598 9 C 0.109 3.891 10 C -0.126 4.126 11 C 0.069 3.931 12 C -0.124 4.124 13 C -0.510 4.510 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.142 3.858 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.012 0.988 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 12.912 -3.028 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.097 3.903 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.284 6.284 6 C 0.412 3.588 7 O -0.467 6.467 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.163 4.163 11 C 0.068 3.932 12 C -0.182 4.182 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.519 5.519 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.023 3.977 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.563 12.711 -3.542 13.208 hybrid contribution -0.355 -0.722 0.413 0.904 sum 0.208 11.990 -3.129 12.393 Atomic orbital electron populations 1.22504 0.94391 1.05195 1.01834 1.21923 0.94165 0.91326 0.82837 1.21827 1.02065 0.93002 1.02639 1.22505 1.01393 1.03820 0.96250 1.86298 1.71903 1.24533 1.45667 1.17670 0.79352 0.79878 0.81923 1.90848 1.42245 1.70343 1.43274 1.47789 1.51655 1.14382 1.19943 1.21967 0.93701 0.97163 0.88608 1.22788 1.00943 0.95310 0.97309 1.19262 0.91456 0.91104 0.91424 1.21681 0.96824 1.00396 0.99264 1.20952 1.44636 0.96504 0.92728 0.91922 1.25005 0.95016 0.98553 0.94999 1.69900 1.46768 1.26688 1.08578 0.86503 0.78341 0.82330 0.80648 1.19730 1.20976 1.21000 1.22783 0.99160 0.74524 1.01238 0.92466 0.91653 0.89177 0.91676 0.90564 0.91724 0.89123 0.91665 0.92393 0.92587 0.92845 0.91461 0.91544 0.90246 0.96912 0.94949 0.92714 0.89483 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 2 C 0.13 1.95 1.13 -90.62 -0.10 1.85 16 3 C -0.14 -1.48 8.85 37.16 0.33 -1.15 16 4 C -0.18 -2.60 8.37 37.16 0.31 -2.29 16 5 O -0.37 -6.61 9.49 -40.30 -0.38 -7.00 16 6 C 0.66 13.82 7.93 54.06 0.43 14.24 16 7 O -0.58 -13.23 12.14 -19.28 -0.23 -13.47 16 8 N -0.60 -12.75 3.31 -176.29 -0.58 -13.33 16 9 C 0.11 1.99 6.54 -3.07 -0.02 1.97 16 10 C -0.13 -2.43 5.89 -24.90 -0.15 -2.58 16 11 C 0.07 1.60 0.56 -153.50 -0.09 1.51 16 12 C -0.12 -2.87 8.39 37.16 0.31 -2.56 16 13 C -0.51 -13.04 8.03 -34.44 -0.28 -13.31 16 14 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 15 C 0.07 1.76 5.21 -17.82 -0.09 1.66 16 16 N -0.88 -23.99 10.36 55.43 0.57 -23.42 16 17 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 C 0.14 3.42 5.12 -2.52 -0.01 3.40 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 1.54 5.88 -51.93 -0.31 1.23 16 25 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.59 5.88 -51.93 -0.31 1.28 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.08 2.04 6.37 -51.93 -0.33 1.71 16 36 H 0.01 0.26 7.86 -51.93 -0.41 -0.15 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.09 2.36 7.25 -51.93 -0.38 1.98 16 40 H 0.05 1.37 8.03 -51.93 -0.42 0.95 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -28.12 315.42 -6.69 -34.81 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.75 Total: 1.73 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.95 Total: 0.52 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.01 Total: -36.75 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.62 Total: -20.46 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.12 -6.69 -34.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.028 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds