Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.47024 * 125.64779 * 359.69658 * 8 6 5 10 10 C 1.54331 * 107.26614 * 178.84768 * 9 8 6 11 11 C 1.55156 * 103.02179 * 338.13854 * 10 9 8 12 12 C 1.53005 * 111.00494 * 277.23667 * 11 10 9 13 13 C 1.50693 * 111.04267 * 153.39522 * 11 10 9 14 14 H 1.08005 * 119.99701 * 6.33104 * 13 11 10 15 15 C 1.37876 * 120.00272 * 186.33111 * 13 11 10 16 16 N 1.31509 * 120.00079 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99959 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47139 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47079 * 120.00012 * 17 15 13 20 20 H 1.48496 * 109.47188 * 240.00271 * 17 15 13 21 21 C 1.47424 * 125.64899 * 179.97438 * 8 6 5 22 22 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 23 23 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 24 24 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 27 27 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 28 28 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 29 29 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 30 30 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.88271 * 298.39176 * 9 8 6 32 32 H 1.09002 * 109.88395 * 59.55797 * 9 8 6 33 33 H 1.09001 * 110.85313 * 219.67261 * 10 9 8 34 34 H 1.09006 * 110.67247 * 96.51981 * 10 9 8 35 35 H 1.08998 * 109.46958 * 173.64792 * 12 11 10 36 36 H 1.08998 * 109.46596 * 293.64567 * 12 11 10 37 37 H 1.09004 * 109.47105 * 53.64496 * 12 11 10 38 38 H 0.96997 * 119.99963 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.36250 * 322.93302 * 21 8 6 40 40 H 1.08996 * 110.36793 * 85.14589 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 2.9210 -2.1437 3.4943 10 6 3.1089 -3.2804 4.5211 11 6 1.8947 -4.2059 4.2443 12 6 0.6422 -3.6962 4.9601 13 6 2.1976 -5.6284 4.6388 14 1 3.1216 -5.8629 5.1463 15 6 1.2951 -6.6305 4.3517 16 7 0.1702 -6.3450 3.7332 17 14 1.6710 -8.3939 4.8401 18 1 2.9911 -8.4492 5.5180 19 1 0.6190 -8.8862 5.7654 20 1 1.7014 -9.2481 3.6258 21 6 1.7475 -4.0749 2.7079 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7208 -1.2495 31 1 3.8875 -1.8435 3.0897 32 1 2.4359 -1.2921 3.9715 33 1 3.0743 -2.8932 5.5394 34 1 4.0453 -3.8092 4.3428 35 1 -0.2171 -4.2960 4.6602 36 1 0.7823 -3.7756 6.0381 37 1 0.4692 -2.6539 4.6920 38 1 -0.4648 -7.0499 3.5316 39 1 0.7258 -4.3022 2.4039 40 1 2.4497 -4.7363 2.2004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = -88.973665 kcal Electronic energy + Delta-G solvation = -20280.711350 eV Core-core repulsion = 17288.375623 eV Total energy + Delta-G solvation = -2992.335727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25162 -38.17968 -36.05786 -33.90546 -33.09886 -30.88180 -28.45623 -27.31122 -27.22519 -25.72326 -25.14130 -22.71574 -20.98949 -18.90047 -18.81035 -17.24223 -16.19832 -16.15818 -15.63319 -14.74395 -14.48533 -14.37334 -13.88030 -13.53228 -12.79020 -12.68800 -12.50953 -12.39399 -12.05646 -11.85629 -11.74018 -11.60876 -11.50880 -11.23572 -11.06902 -11.00863 -10.92423 -10.74607 -10.49518 -10.22395 -10.05383 -9.67180 -9.50635 -9.20631 -8.87407 -8.53146 -7.84049 -6.08488 -4.16400 2.71702 3.26825 3.35680 3.38326 3.46850 4.35795 4.51148 4.86494 4.89099 5.04544 5.20788 5.51381 5.57348 5.61374 5.65171 5.75539 5.77134 5.82993 5.95143 5.99621 6.04302 6.23156 6.45552 6.46723 6.51495 6.61213 6.76343 6.82197 6.94016 6.96881 7.04702 7.16891 7.38358 7.58934 7.75287 8.02205 8.30739 8.32088 8.84331 8.99311 9.49944 10.97231 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.005474 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.222104 B = 5113.528657 C = 5394.946703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.369 6.369 6 C 0.657 3.343 7 O -0.577 6.577 8 N -0.598 5.598 9 C 0.109 3.891 10 C -0.126 4.126 11 C 0.069 3.931 12 C -0.123 4.123 13 C -0.510 4.510 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.142 3.858 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 12.045 -4.545 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.284 6.284 6 C 0.412 3.588 7 O -0.467 6.467 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.164 4.164 11 C 0.068 3.932 12 C -0.181 4.181 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.519 5.519 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.023 3.977 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.915 11.889 -4.984 13.216 hybrid contribution 0.119 -0.894 0.118 0.910 sum 3.034 10.994 -4.866 12.400 Atomic orbital electron populations 1.22508 0.94312 1.05284 1.01866 1.21919 0.94245 0.91310 0.82775 1.21826 1.01996 0.93026 1.02685 1.22504 1.01279 1.03806 0.96336 1.86300 1.71853 1.24550 1.45702 1.17668 0.79308 0.79854 0.81991 1.90847 1.42074 1.70474 1.43315 1.47793 1.51512 1.14453 1.20021 1.21969 0.93266 0.97556 0.88647 1.22785 1.01104 0.95723 0.96751 1.19251 0.90438 0.93976 0.89567 1.21678 1.01048 0.96980 0.98364 1.20947 1.04691 0.90468 1.38743 0.91923 1.25005 0.94862 0.99119 0.94573 1.69903 1.08872 1.32896 1.40259 0.86503 0.78380 0.84674 0.78268 1.19728 1.20999 1.20975 1.22782 1.01753 0.74631 0.98519 0.92391 0.91674 0.89120 0.91724 0.90571 0.91672 0.89176 0.91652 0.92470 0.92822 0.92566 0.91545 0.91492 0.90396 0.94842 0.96949 0.92719 0.89469 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.37 37.16 0.31 -2.29 16 2 C 0.13 1.95 1.13 -90.62 -0.10 1.85 16 3 C -0.14 -1.48 8.85 37.16 0.33 -1.15 16 4 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 5 O -0.37 -6.61 9.49 -40.34 -0.38 -7.00 16 6 C 0.66 13.81 7.93 54.06 0.43 14.24 16 7 O -0.58 -13.23 12.14 -19.28 -0.23 -13.46 16 8 N -0.60 -12.75 3.31 -176.30 -0.58 -13.33 16 9 C 0.11 1.99 6.53 -3.06 -0.02 1.97 16 10 C -0.13 -2.43 5.89 -24.89 -0.15 -2.58 16 11 C 0.07 1.60 0.56 -153.52 -0.09 1.52 16 12 C -0.12 -2.85 8.37 37.16 0.31 -2.54 16 13 C -0.51 -13.05 8.03 -34.44 -0.28 -13.33 16 14 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 15 C 0.07 1.76 5.22 -17.82 -0.09 1.67 16 16 N -0.88 -24.00 10.39 55.43 0.58 -23.43 16 17 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.14 3.42 5.11 -2.54 -0.01 3.41 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 1.59 5.88 -51.93 -0.31 1.28 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.54 5.88 -51.93 -0.31 1.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 35 H 0.08 2.00 6.45 -51.93 -0.34 1.67 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.01 0.25 7.83 -51.93 -0.41 -0.15 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.09 2.36 7.24 -51.93 -0.38 1.98 16 40 H 0.05 1.36 8.03 -51.93 -0.42 0.94 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -28.13 315.45 -6.69 -34.82 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.75 Total: 1.70 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.95 Total: 0.54 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.01 Total: -36.76 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.62 Total: -20.46 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.13 -6.69 -34.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.154 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds