Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.47024 * 125.64779 * 359.69658 * 8 6 5 10 10 C 1.54331 * 107.26614 * 178.84768 * 9 8 6 11 11 C 1.55156 * 103.02179 * 338.13854 * 10 9 8 12 12 C 1.53005 * 111.00494 * 277.23667 * 11 10 9 13 13 C 1.50693 * 111.04267 * 153.39522 * 11 10 9 14 14 H 1.08005 * 119.99701 * 6.33104 * 13 11 10 15 15 C 1.37876 * 120.00272 * 186.33111 * 13 11 10 16 16 N 1.31509 * 120.00079 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99959 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47139 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47079 * 120.00012 * 17 15 13 20 20 H 1.48496 * 109.47188 * 240.00271 * 17 15 13 21 21 C 1.47424 * 125.64899 * 179.97438 * 8 6 5 22 22 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 23 23 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 24 24 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 27 27 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 28 28 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 29 29 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 30 30 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.88271 * 298.39176 * 9 8 6 32 32 H 1.09002 * 109.88395 * 59.55797 * 9 8 6 33 33 H 1.09001 * 110.85313 * 219.67261 * 10 9 8 34 34 H 1.09006 * 110.67247 * 96.51981 * 10 9 8 35 35 H 1.08998 * 109.46958 * 173.64792 * 12 11 10 36 36 H 1.08998 * 109.46596 * 293.64567 * 12 11 10 37 37 H 1.09004 * 109.47105 * 53.64496 * 12 11 10 38 38 H 0.96997 * 119.99963 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.36250 * 322.93302 * 21 8 6 40 40 H 1.08996 * 110.36793 * 85.14589 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 2.9210 -2.1437 3.4943 10 6 3.1089 -3.2804 4.5211 11 6 1.8947 -4.2059 4.2443 12 6 0.6422 -3.6962 4.9601 13 6 2.1976 -5.6284 4.6388 14 1 3.1216 -5.8629 5.1463 15 6 1.2951 -6.6305 4.3517 16 7 0.1702 -6.3450 3.7332 17 14 1.6710 -8.3939 4.8401 18 1 2.9911 -8.4492 5.5180 19 1 0.6190 -8.8862 5.7654 20 1 1.7014 -9.2481 3.6258 21 6 1.7475 -4.0749 2.7079 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7208 -1.2495 31 1 3.8875 -1.8435 3.0897 32 1 2.4359 -1.2921 3.9715 33 1 3.0743 -2.8932 5.5394 34 1 4.0453 -3.8092 4.3428 35 1 -0.2171 -4.2960 4.6602 36 1 0.7823 -3.7756 6.0381 37 1 0.4692 -2.6539 4.6920 38 1 -0.4648 -7.0499 3.5316 39 1 0.7258 -4.3022 2.4039 40 1 2.4497 -4.7363 2.2004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = -104.871620 kcal Electronic energy + Delta-G solvation = -20281.400737 eV Core-core repulsion = 17288.375623 eV Total energy + Delta-G solvation = -2993.025114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.76551 -39.78715 -37.60512 -35.45733 -34.69764 -32.68557 -30.12775 -28.34879 -28.25701 -27.58194 -27.07600 -24.32011 -22.38870 -20.73069 -20.24913 -18.88180 -17.97678 -17.52885 -17.28431 -16.51298 -15.95659 -15.85832 -15.20823 -14.79238 -14.56608 -14.44028 -14.08014 -13.53515 -13.32022 -13.28648 -13.07365 -12.91865 -12.85735 -12.82751 -12.77534 -12.63991 -12.40716 -12.24210 -12.19630 -12.09579 -11.41643 -11.34321 -11.08202 -10.97389 -10.78497 -10.51648 -9.55119 -8.07312 -6.21320 1.22322 1.44811 1.48039 1.57560 1.83857 2.45817 3.07231 3.21592 3.79892 3.83119 3.97918 3.99615 4.16876 4.33801 4.54431 4.61782 4.62510 4.69988 4.77403 4.78747 4.84388 4.87640 4.90293 5.08701 5.11314 5.14799 5.18051 5.27807 5.31286 5.32573 5.41792 5.46758 5.53631 5.66746 5.80645 6.11040 6.37298 6.65929 6.87037 7.37757 7.48236 8.96867 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.005474 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.222104 B = 5113.528657 C = 5394.946703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 C -0.130 4.130 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.655 3.345 7 O -0.604 6.604 8 N -0.606 5.606 9 C 0.111 3.889 10 C -0.116 4.116 11 C 0.056 3.944 12 C -0.112 4.112 13 C -0.519 4.519 14 H 0.065 0.935 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 0.952 3.048 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.288 1.288 21 C 0.159 3.841 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.023 0.977 38 H 0.259 0.741 39 H 0.046 0.954 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 14.076 -4.289 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 C -0.187 4.187 4 C -0.236 4.236 5 O -0.280 6.280 6 C 0.411 3.589 7 O -0.496 6.496 8 N -0.346 5.346 9 C -0.011 4.011 10 C -0.154 4.154 11 C 0.055 3.945 12 C -0.169 4.169 13 C -0.558 4.558 14 H 0.084 0.916 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.778 3.222 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.215 1.215 21 C 0.038 3.962 22 H 0.079 0.921 23 H 0.115 0.885 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.380 13.955 -4.717 15.368 hybrid contribution -0.351 -1.461 -0.037 1.504 sum 4.029 12.494 -4.754 13.962 Atomic orbital electron populations 1.22467 0.94437 1.03165 1.03590 1.22484 0.94494 0.93124 0.81656 1.21852 1.02446 0.89951 1.04424 1.22458 1.01595 1.01889 0.97612 1.86311 1.71638 1.22548 1.47474 1.17777 0.78875 0.80812 0.81481 1.90846 1.43124 1.71408 1.44263 1.47764 1.52184 1.13614 1.21053 1.22124 0.94023 0.97391 0.87590 1.22718 0.99143 0.95118 0.98393 1.19307 0.92315 0.94146 0.88747 1.21514 0.99790 0.96908 0.98719 1.21293 1.04520 0.91782 1.38182 0.91642 1.25711 0.94808 1.02624 0.94755 1.70059 1.09735 1.33608 1.41463 0.85595 0.78475 0.80472 0.77635 1.18643 1.20956 1.21457 1.22297 0.98638 0.76208 0.99075 0.92114 0.88512 0.93047 0.91041 0.87559 0.91199 0.92976 0.88553 0.91880 0.90419 0.90898 0.89304 0.91083 0.93649 0.93950 0.95834 0.93144 0.93508 0.94936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.91 8.37 71.98 0.60 -4.30 16 2 C 0.12 3.20 1.13 -10.79 -0.01 3.19 16 3 C -0.13 -2.29 8.85 71.98 0.64 -1.65 16 4 C -0.18 -4.74 8.37 71.98 0.60 -4.13 16 5 O -0.36 -12.63 9.49 -55.54 -0.53 -13.15 16 6 C 0.66 27.76 7.93 129.79 1.03 28.79 16 7 O -0.60 -28.85 12.14 19.82 0.24 -28.61 16 8 N -0.61 -25.83 3.31 -942.11 -3.12 -28.95 16 9 C 0.11 3.80 6.53 86.73 0.57 4.36 16 10 C -0.12 -4.25 5.89 31.78 0.19 -4.06 16 11 C 0.06 2.61 0.56 -51.54 -0.03 2.58 16 12 C -0.11 -5.18 8.37 71.98 0.60 -4.57 16 13 C -0.52 -26.58 8.03 25.60 0.21 -26.37 16 14 H 0.07 3.24 7.79 -2.91 -0.02 3.22 16 15 C 0.02 1.12 5.22 84.66 0.44 1.56 16 16 N -0.91 -51.26 10.39 21.45 0.22 -51.04 16 17 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 C 0.16 7.87 5.11 86.85 0.44 8.31 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 1.83 5.88 -2.38 -0.01 1.82 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.80 5.88 -2.38 -0.01 1.79 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.09 2.86 8.05 -2.39 -0.02 2.84 16 34 H 0.07 2.54 8.03 -2.38 -0.02 2.52 16 35 H 0.04 2.39 6.45 -2.39 -0.02 2.37 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.02 0.99 7.83 -2.39 -0.02 0.97 16 38 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.05 2.67 7.24 -2.39 -0.02 2.65 16 40 H 0.03 1.70 8.03 -2.39 -0.02 1.68 16 Total: -1.00 -63.11 315.45 5.11 -57.99 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.00 Total: 15.75 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.28 Total: 3.70 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.90 Total: -79.99 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.29 Total: -41.76 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -63.11 5.11 -57.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.880 kcal (2) G-P(sol) polarization free energy of solvation -63.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds