Wall clock time and date at job start Mon Mar 30 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47314 * 2 1 4 4 C 1.53002 * 109.46813 * 239.99558 * 2 1 3 5 5 O 1.45207 * 109.46937 * 120.00009 * 2 1 3 6 6 C 1.34629 * 116.99966 * 59.99795 * 5 2 1 7 7 O 1.21516 * 120.00197 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99921 * 179.97438 * 6 5 2 9 9 C 1.47420 * 125.64350 * 354.51284 * 8 6 5 10 10 C 1.54912 * 104.83023 * 156.13714 * 9 8 6 11 11 C 1.55161 * 101.58258 * 37.00893 * 10 9 8 12 12 C 1.47022 * 125.64972 * 174.82066 * 8 6 5 13 13 C 1.53005 * 109.88002 * 300.21284 * 12 8 6 14 14 C 1.50702 * 109.88297 * 61.37545 * 12 8 6 15 15 H 1.08004 * 120.00015 * 354.63799 * 14 12 8 16 16 C 1.37876 * 119.99945 * 174.63366 * 14 12 8 17 17 N 1.31506 * 120.00069 * 0.99504 * 16 14 12 18 18 Si 1.86799 * 119.99672 * 180.99033 * 16 14 12 19 19 H 1.48497 * 109.47644 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46798 * 120.00488 * 18 16 14 21 21 H 1.48496 * 109.47360 * 240.00088 * 18 16 14 22 22 H 1.09002 * 109.46905 * 300.00269 * 1 2 3 23 23 H 1.08997 * 109.47179 * 60.00143 * 1 2 3 24 24 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47520 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47231 * 300.00020 * 3 2 1 27 27 H 1.08997 * 109.47180 * 59.99552 * 3 2 1 28 28 H 1.08991 * 109.47232 * 300.00111 * 4 2 1 29 29 H 1.09005 * 109.46845 * 60.00524 * 4 2 1 30 30 H 1.08997 * 109.46706 * 179.97438 * 4 2 1 31 31 H 1.09004 * 110.36574 * 274.97049 * 9 8 6 32 32 H 1.09000 * 110.37407 * 37.29651 * 9 8 6 33 33 H 1.08994 * 111.00359 * 278.93512 * 10 9 8 34 34 H 1.09001 * 111.00523 * 155.08237 * 10 9 8 35 35 H 1.09001 * 110.71978 * 206.13801 * 11 10 9 36 36 H 1.08993 * 110.87046 * 82.93349 * 11 10 9 37 37 H 1.08999 * 109.46854 * 61.45508 * 13 12 8 38 38 H 1.09002 * 109.46568 * 181.45344 * 13 12 8 39 39 H 1.08996 * 109.47091 * 301.44942 * 13 12 8 40 40 H 0.96998 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4168 9 6 3.0090 -2.1778 3.4414 10 6 2.6911 -3.0178 4.7036 11 6 2.3717 -4.4037 4.0834 12 6 1.6632 -4.0361 2.7626 13 6 0.1460 -4.0986 2.9510 14 6 2.0866 -4.9862 1.6722 15 1 2.5292 -4.6036 0.7643 16 6 1.9091 -6.3440 1.8336 17 7 1.3524 -6.8085 2.9307 18 14 2.4593 -7.5235 0.4937 19 1 3.0519 -6.7547 -0.6301 20 1 3.4744 -8.4580 1.0431 21 1 1.2897 -8.2959 0.0032 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7210 -1.2494 31 1 4.0376 -2.3464 3.1227 32 1 2.8405 -1.1190 3.6379 33 1 1.8258 -2.6173 5.2317 34 1 3.5572 -3.0751 5.3631 35 1 1.7062 -4.9726 4.7326 36 1 3.2872 -4.9618 3.8876 37 1 -0.3474 -3.8253 2.0184 38 1 -0.1437 -5.1111 3.2323 39 1 -0.1514 -3.4041 3.7367 40 1 1.2272 -7.7637 3.0441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:45 Heat of formation + Delta-G solvation = -81.853160 kcal Electronic energy + Delta-G solvation = -20813.595278 eV Core-core repulsion = 17821.568319 eV Total energy + Delta-G solvation = -2992.026959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03355 -38.08848 -35.61239 -33.68247 -32.77415 -30.43440 -29.60033 -27.18453 -27.07308 -25.25774 -24.42053 -22.75305 -20.91464 -19.39814 -18.42585 -17.25232 -16.03327 -15.71090 -15.22413 -14.86282 -14.43151 -14.02079 -13.89055 -13.34862 -12.73843 -12.39718 -12.32703 -12.16548 -11.94108 -11.64114 -11.58724 -11.53671 -11.40454 -11.20168 -10.98136 -10.80540 -10.78795 -10.59838 -10.46183 -10.23100 -9.95470 -9.79336 -9.47764 -9.09958 -8.84139 -8.37590 -7.54301 -6.00388 -4.02487 2.96726 3.32366 3.40370 3.47514 3.82055 4.45387 4.73670 5.01408 5.03281 5.19686 5.28096 5.47083 5.62268 5.71995 5.73639 5.75709 5.88525 5.93565 5.96442 6.14592 6.16064 6.23019 6.44608 6.45468 6.62323 6.69218 6.71280 6.86986 6.92571 7.03477 7.18477 7.35805 7.43631 7.77606 7.83936 8.06562 8.31099 8.68660 8.98685 9.35651 9.62999 11.05498 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.007930 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.883692 B = 3530.150050 C = 4201.266334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.377 6.377 6 C 0.659 3.341 7 O -0.557 6.557 8 N -0.586 5.586 9 C 0.108 3.892 10 C -0.144 4.144 11 C -0.090 4.090 12 C 0.301 3.699 13 C -0.141 4.141 14 C -0.498 4.498 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.009 0.991 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 12.080 -0.426 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.293 6.293 6 C 0.413 3.587 7 O -0.446 6.446 8 N -0.326 5.326 9 C -0.015 4.015 10 C -0.182 4.182 11 C -0.128 4.128 12 C 0.221 3.779 13 C -0.200 4.200 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.028 0.972 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.422 11.824 -0.724 11.932 hybrid contribution 0.282 -0.626 -0.777 1.037 sum 1.705 11.198 -1.501 11.426 Atomic orbital electron populations 1.22499 0.94520 1.05306 1.01520 1.21839 0.94064 0.91146 0.83058 1.21816 1.01922 0.93276 1.02443 1.22499 1.01229 1.04042 0.96150 1.86267 1.72420 1.25118 1.45463 1.17531 0.79679 0.79421 0.82045 1.90847 1.41884 1.69765 1.42101 1.47745 1.46181 1.16788 1.21837 1.22120 0.93313 0.97485 0.88613 1.22891 1.00721 0.98655 0.95966 1.22543 1.01126 0.93015 0.96156 1.18749 0.91544 0.74640 0.92988 1.22070 0.97522 1.01804 0.98563 1.21283 1.39728 0.90428 1.02222 0.92161 1.24816 0.95183 0.97981 0.95753 1.69912 1.43888 1.13494 1.25854 0.86459 0.78252 0.80724 0.82118 1.19919 1.21162 1.21065 0.92661 0.91912 0.88985 0.91822 0.90749 0.91871 0.88872 0.91954 0.92591 0.92380 0.92097 0.91901 0.91406 0.90477 0.91503 0.93705 0.89613 0.97180 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 37.16 0.31 -2.46 16 2 C 0.14 2.15 1.13 -90.62 -0.10 2.05 16 3 C -0.14 -1.61 8.85 37.15 0.33 -1.28 16 4 C -0.18 -2.88 8.37 37.16 0.31 -2.57 16 5 O -0.38 -7.25 9.39 -40.29 -0.38 -7.63 16 6 C 0.66 14.90 7.42 54.06 0.40 15.30 16 7 O -0.56 -13.85 10.23 -19.28 -0.20 -14.05 16 8 N -0.59 -13.23 2.81 -162.76 -0.46 -13.68 16 9 C 0.11 2.01 6.95 -2.53 -0.02 1.99 16 10 C -0.14 -2.54 7.09 -24.58 -0.17 -2.71 16 11 C -0.09 -1.98 4.76 -24.90 -0.12 -2.10 16 12 C 0.30 7.43 0.52 -131.99 -0.07 7.36 16 13 C -0.14 -3.52 8.19 37.16 0.30 -3.21 16 14 C -0.50 -13.82 7.35 -34.44 -0.25 -14.07 16 15 H 0.06 1.79 7.54 -52.48 -0.40 1.39 16 16 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -24.33 10.43 55.43 0.58 -23.75 16 18 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 1.72 5.88 -51.93 -0.31 1.41 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.81 5.88 -51.93 -0.31 1.50 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.77 7.57 -51.93 -0.39 1.38 16 36 H 0.07 1.57 7.81 -51.93 -0.41 1.16 16 37 H 0.04 1.18 6.93 -51.93 -0.36 0.82 16 38 H 0.09 2.26 6.43 -51.93 -0.33 1.93 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -29.64 311.77 -6.65 -36.29 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.70 Total: 1.39 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 0.83 Total: -0.06 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.12 Total: -37.43 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.58 Total: -21.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.64 -6.65 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.564 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds