Wall clock time and date at job start Mon Mar 30 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47314 * 2 1 4 4 C 1.53002 * 109.46813 * 239.99558 * 2 1 3 5 5 O 1.45207 * 109.46937 * 120.00009 * 2 1 3 6 6 C 1.34629 * 116.99966 * 59.99795 * 5 2 1 7 7 O 1.21516 * 120.00197 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99921 * 179.97438 * 6 5 2 9 9 C 1.47420 * 125.64350 * 354.51284 * 8 6 5 10 10 C 1.54912 * 104.83023 * 156.13714 * 9 8 6 11 11 C 1.55161 * 101.58258 * 37.00893 * 10 9 8 12 12 C 1.47022 * 125.64972 * 174.82066 * 8 6 5 13 13 C 1.53005 * 109.88002 * 300.21284 * 12 8 6 14 14 C 1.50702 * 109.88297 * 61.37545 * 12 8 6 15 15 H 1.08004 * 120.00015 * 354.63799 * 14 12 8 16 16 C 1.37876 * 119.99945 * 174.63366 * 14 12 8 17 17 N 1.31506 * 120.00069 * 0.99504 * 16 14 12 18 18 Si 1.86799 * 119.99672 * 180.99033 * 16 14 12 19 19 H 1.48497 * 109.47644 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46798 * 120.00488 * 18 16 14 21 21 H 1.48496 * 109.47360 * 240.00088 * 18 16 14 22 22 H 1.09002 * 109.46905 * 300.00269 * 1 2 3 23 23 H 1.08997 * 109.47179 * 60.00143 * 1 2 3 24 24 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47520 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47231 * 300.00020 * 3 2 1 27 27 H 1.08997 * 109.47180 * 59.99552 * 3 2 1 28 28 H 1.08991 * 109.47232 * 300.00111 * 4 2 1 29 29 H 1.09005 * 109.46845 * 60.00524 * 4 2 1 30 30 H 1.08997 * 109.46706 * 179.97438 * 4 2 1 31 31 H 1.09004 * 110.36574 * 274.97049 * 9 8 6 32 32 H 1.09000 * 110.37407 * 37.29651 * 9 8 6 33 33 H 1.08994 * 111.00359 * 278.93512 * 10 9 8 34 34 H 1.09001 * 111.00523 * 155.08237 * 10 9 8 35 35 H 1.09001 * 110.71978 * 206.13801 * 11 10 9 36 36 H 1.08993 * 110.87046 * 82.93349 * 11 10 9 37 37 H 1.08999 * 109.46854 * 61.45508 * 13 12 8 38 38 H 1.09002 * 109.46568 * 181.45344 * 13 12 8 39 39 H 1.08996 * 109.47091 * 301.44942 * 13 12 8 40 40 H 0.96998 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4168 9 6 3.0090 -2.1778 3.4414 10 6 2.6911 -3.0178 4.7036 11 6 2.3717 -4.4037 4.0834 12 6 1.6632 -4.0361 2.7626 13 6 0.1460 -4.0986 2.9510 14 6 2.0866 -4.9862 1.6722 15 1 2.5292 -4.6036 0.7643 16 6 1.9091 -6.3440 1.8336 17 7 1.3524 -6.8085 2.9307 18 14 2.4593 -7.5235 0.4937 19 1 3.0519 -6.7547 -0.6301 20 1 3.4744 -8.4580 1.0431 21 1 1.2897 -8.2959 0.0032 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7210 -1.2494 31 1 4.0376 -2.3464 3.1227 32 1 2.8405 -1.1190 3.6379 33 1 1.8258 -2.6173 5.2317 34 1 3.5572 -3.0751 5.3631 35 1 1.7062 -4.9726 4.7326 36 1 3.2872 -4.9618 3.8876 37 1 -0.3474 -3.8253 2.0184 38 1 -0.1437 -5.1111 3.2323 39 1 -0.1514 -3.4041 3.7367 40 1 1.2272 -7.7637 3.0441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:45 Heat of formation + Delta-G solvation = -99.166184 kcal Electronic energy + Delta-G solvation = -20814.346027 eV Core-core repulsion = 17821.568319 eV Total energy + Delta-G solvation = -2992.777708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.63500 -39.71088 -37.24163 -35.25871 -34.58515 -32.06736 -31.50357 -28.32130 -28.22667 -27.34980 -26.18394 -24.41834 -22.39541 -21.01942 -20.09947 -19.01256 -17.67880 -17.37253 -16.87450 -16.63838 -16.11732 -15.63688 -15.24594 -14.78643 -14.41559 -14.00335 -13.87185 -13.47530 -13.31259 -13.24338 -13.18241 -12.94630 -12.85571 -12.79272 -12.74521 -12.52721 -12.39336 -12.30861 -12.11790 -12.08382 -11.68130 -11.26686 -11.22537 -10.89901 -10.71837 -10.42575 -9.33396 -8.09723 -6.17723 1.35284 1.38114 1.42270 1.50897 2.10350 2.43469 3.16676 3.25115 3.84736 3.86893 3.94733 4.01805 4.23261 4.32093 4.58254 4.64220 4.69090 4.75009 4.79013 4.83404 4.86082 4.90539 4.92729 4.95423 5.01586 5.14867 5.18252 5.34406 5.34888 5.43272 5.49431 5.54723 5.64414 5.68658 5.91401 6.06269 6.31799 6.76290 7.01138 7.43990 7.70862 8.93810 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.007930 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.883692 B = 3530.150050 C = 4201.266334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.120 3.880 3 C -0.128 4.128 4 C -0.178 4.178 5 O -0.373 6.373 6 C 0.654 3.346 7 O -0.590 6.590 8 N -0.597 5.597 9 C 0.104 3.896 10 C -0.127 4.127 11 C -0.083 4.083 12 C 0.293 3.707 13 C -0.127 4.127 14 C -0.516 4.516 15 H 0.028 0.972 16 C 0.029 3.971 17 N -0.902 5.902 18 Si 0.945 3.055 19 H -0.286 1.286 20 H -0.270 1.270 21 H -0.282 1.282 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 14.061 0.125 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 C -0.185 4.185 4 C -0.235 4.235 5 O -0.289 6.289 6 C 0.409 3.591 7 O -0.480 6.480 8 N -0.337 5.337 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.122 4.122 12 C 0.212 3.788 13 C -0.185 4.185 14 C -0.555 4.555 15 H 0.047 0.953 16 C -0.171 4.171 17 N -0.541 5.541 18 Si 0.772 3.228 19 H -0.212 1.212 20 H -0.195 1.195 21 H -0.208 1.208 22 H 0.080 0.920 23 H 0.112 0.888 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.239 13.829 -0.154 14.010 hybrid contribution 0.000 -1.199 -1.029 1.580 sum 2.239 12.630 -1.182 12.882 Atomic orbital electron populations 1.22433 0.94356 1.03152 1.03403 1.22393 0.94534 0.92999 0.81682 1.21830 1.02253 0.90036 1.04380 1.22441 1.01246 1.01922 0.97910 1.86268 1.72268 1.23191 1.47170 1.17709 0.79330 0.80374 0.81699 1.90839 1.43179 1.70790 1.43238 1.47779 1.46866 1.16321 1.22762 1.22370 0.92659 0.99025 0.87786 1.22861 1.02792 0.94883 0.95908 1.22288 0.99546 0.95464 0.94940 1.18680 0.91276 0.75508 0.93373 1.21880 0.98033 1.00962 0.97648 1.21354 1.40310 0.91694 1.02155 0.95343 1.25345 0.95333 0.98979 0.97457 1.69970 1.43826 1.13825 1.26446 0.85722 0.78140 0.79147 0.79832 1.21177 1.19544 1.20818 0.91967 0.88805 0.93054 0.91329 0.87713 0.91014 0.93223 0.88731 0.92441 0.91918 0.89524 0.90554 0.87834 0.91677 0.93369 0.96389 0.91483 0.95180 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.21 8.37 71.98 0.60 -4.61 16 2 C 0.12 3.61 1.13 -10.79 -0.01 3.60 16 3 C -0.13 -2.55 8.85 71.98 0.64 -1.91 16 4 C -0.18 -5.52 8.37 71.98 0.60 -4.92 16 5 O -0.37 -14.09 9.39 -55.38 -0.52 -14.61 16 6 C 0.65 30.06 7.42 129.79 0.96 31.03 16 7 O -0.59 -30.69 10.23 19.79 0.20 -30.49 16 8 N -0.60 -27.02 2.81 -899.27 -2.53 -29.54 16 9 C 0.10 3.63 6.95 86.86 0.60 4.23 16 10 C -0.13 -4.11 7.09 31.99 0.23 -3.88 16 11 C -0.08 -3.66 4.76 31.78 0.15 -3.51 16 12 C 0.29 14.69 0.52 3.21 0.00 14.69 16 13 C -0.13 -6.46 8.19 71.98 0.59 -5.87 16 14 C -0.52 -29.63 7.35 25.60 0.19 -29.44 16 15 H 0.03 1.77 7.54 -2.91 -0.02 1.75 16 16 C 0.03 1.61 5.15 84.66 0.44 2.05 16 17 N -0.90 -49.79 10.43 21.45 0.22 -49.56 16 18 Si 0.94 45.58 29.54 68.60 2.03 47.60 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 24 H 0.05 1.96 5.88 -2.39 -0.01 1.95 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 2.00 5.88 -2.39 -0.01 1.98 16 29 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.59 7.99 -2.39 -0.02 2.57 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.98 7.57 -2.39 -0.02 2.96 16 36 H 0.05 2.26 7.81 -2.39 -0.02 2.24 16 37 H 0.02 0.95 6.93 -2.39 -0.02 0.94 16 38 H 0.07 3.63 6.43 -2.39 -0.02 3.61 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -67.19 311.77 5.39 -61.80 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.00 Total: 13.34 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 4.99 Total: 1.46 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -2.30 Total: -79.11 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.32 Total: -45.10 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -67.19 5.39 -61.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.370 kcal (2) G-P(sol) polarization free energy of solvation -67.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds