Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46979 * 2 1 4 4 C 1.53004 * 109.46720 * 240.00346 * 2 1 3 5 5 O 1.45194 * 109.47588 * 120.00270 * 2 1 3 6 6 C 1.34635 * 117.00061 * 59.99430 * 5 2 1 7 7 O 1.21518 * 119.99773 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00495 * 180.02562 * 6 5 2 9 9 C 1.47428 * 125.64692 * 5.00646 * 8 6 5 10 10 C 1.54903 * 104.83566 * 155.88805 * 9 8 6 11 11 C 1.55157 * 101.57899 * 37.01222 * 10 9 8 12 12 C 1.47019 * 125.65359 * 185.02653 * 8 6 5 13 13 C 1.53002 * 110.01023 * 61.55016 * 12 8 6 14 14 C 1.50700 * 109.88052 * 300.45695 * 12 8 6 15 15 H 1.07995 * 120.00271 * 5.08638 * 14 12 8 16 16 C 1.37887 * 119.99905 * 185.08300 * 14 12 8 17 17 N 1.31515 * 119.99604 * 353.99261 * 16 14 12 18 18 Si 1.86796 * 119.99948 * 173.99152 * 16 14 12 19 19 H 1.48493 * 109.47258 * 270.00097 * 18 16 14 20 20 H 1.48506 * 109.47231 * 30.00309 * 18 16 14 21 21 H 1.48499 * 109.46919 * 149.99932 * 18 16 14 22 22 H 1.09003 * 109.47084 * 299.99865 * 1 2 3 23 23 H 1.08998 * 109.47452 * 59.99621 * 1 2 3 24 24 H 1.08999 * 109.47389 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47128 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47427 * 300.00088 * 3 2 1 27 27 H 1.08997 * 109.47642 * 60.00537 * 3 2 1 28 28 H 1.08995 * 109.47063 * 299.99492 * 4 2 1 29 29 H 1.08998 * 109.47132 * 59.99836 * 4 2 1 30 30 H 1.08999 * 109.47098 * 179.97438 * 4 2 1 31 31 H 1.09007 * 110.36717 * 37.04730 * 9 8 6 32 32 H 1.09001 * 110.45712 * 274.77841 * 9 8 6 33 33 H 1.08997 * 111.00732 * 278.93230 * 10 9 8 34 34 H 1.08999 * 111.00500 * 155.08357 * 10 9 8 35 35 H 1.09003 * 110.71748 * 206.13873 * 11 10 9 36 36 H 1.09002 * 110.72480 * 82.86030 * 11 10 9 37 37 H 1.08995 * 109.47034 * 298.19879 * 13 12 8 38 38 H 1.09001 * 109.47094 * 58.20272 * 13 12 8 39 39 H 1.09006 * 109.46873 * 178.20437 * 13 12 8 40 40 H 0.97002 * 119.99144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9515 -2.5096 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 2.8290 -2.1135 3.5521 10 6 2.5217 -3.0642 4.7358 11 6 2.4655 -4.4411 4.0228 12 6 1.8358 -4.0974 2.6565 13 6 2.4988 -4.9265 1.5547 14 6 0.3556 -4.3788 2.6890 15 1 -0.3488 -3.5916 2.4648 16 6 -0.0993 -5.6416 3.0050 17 7 0.7559 -6.6283 3.1620 18 14 -1.9300 -5.9506 3.2101 19 1 -2.3140 -5.7279 4.6272 20 1 -2.6901 -5.0184 2.3390 21 1 -2.2416 -7.3511 2.8270 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 -1.7488 -1.2493 29 1 1.6765 -0.2073 -2.1393 30 1 3.1299 -0.7208 -1.2496 31 1 2.4911 -1.1025 3.7799 32 1 3.8964 -2.1151 3.3314 33 1 1.5625 -2.8215 5.1930 34 1 3.3224 -3.0394 5.4749 35 1 1.8328 -5.1359 4.5752 36 1 3.4678 -4.8498 3.8937 37 1 2.0531 -4.6746 0.5924 38 1 3.5665 -4.7087 1.5287 39 1 2.3490 -5.9869 1.7579 40 1 0.4358 -7.5165 3.3847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = -79.952354 kcal Electronic energy + Delta-G solvation = -20830.191978 eV Core-core repulsion = 17838.247444 eV Total energy + Delta-G solvation = -2991.944533 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02568 -38.07685 -35.60311 -33.68375 -32.78510 -30.41173 -29.62803 -27.18171 -27.06952 -25.25253 -24.41722 -22.68439 -20.89226 -19.52381 -18.38174 -17.10373 -16.20182 -15.67940 -15.23315 -14.93692 -14.32384 -14.03146 -13.78417 -13.35285 -12.64796 -12.42654 -12.33842 -12.24017 -12.06858 -11.79734 -11.58678 -11.46669 -11.32989 -11.11917 -10.93715 -10.81516 -10.71373 -10.56625 -10.35244 -10.23736 -9.95461 -9.78787 -9.48623 -9.15494 -8.88352 -8.33198 -7.53955 -5.99554 -4.02854 2.97206 3.32793 3.39588 3.46434 3.82569 4.45077 4.74025 5.01725 5.03612 5.20031 5.28013 5.48889 5.62602 5.73770 5.75367 5.77714 5.88895 5.93905 5.96770 6.15028 6.16068 6.21819 6.38094 6.51594 6.62831 6.69764 6.74941 6.89943 6.96683 7.08482 7.15975 7.35884 7.42522 7.76912 7.86364 8.11106 8.31886 8.69459 8.98596 9.36052 9.62549 11.04279 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.007814 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.573875 B = 3582.283685 C = 4122.448999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.377 6.377 6 C 0.659 3.341 7 O -0.556 6.556 8 N -0.586 5.586 9 C 0.107 3.893 10 C -0.133 4.133 11 C -0.103 4.103 12 C 0.302 3.698 13 C -0.143 4.143 14 C -0.494 4.494 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.282 1.282 20 H -0.275 1.275 21 H -0.287 1.287 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.007 0.993 39 H 0.092 0.908 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 11.118 -1.700 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.293 6.293 6 C 0.413 3.587 7 O -0.445 6.445 8 N -0.326 5.326 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.142 4.142 12 C 0.221 3.779 13 C -0.202 4.202 14 C -0.532 4.532 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.723 3.277 19 H -0.208 1.208 20 H -0.200 1.200 21 H -0.213 1.213 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.110 0.890 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.998 10.837 -2.045 11.730 hybrid contribution -0.966 -0.123 0.034 0.974 sum 3.032 10.714 -2.011 11.315 Atomic orbital electron populations 1.22499 0.94443 1.05448 1.01531 1.21835 0.94141 0.91132 0.83000 1.21817 1.01849 0.93301 1.02484 1.22497 1.01100 1.03999 0.96250 1.86268 1.72041 1.25364 1.45607 1.17537 0.79427 0.79390 0.82355 1.90853 1.40465 1.69797 1.43347 1.47761 1.55728 1.11794 1.17295 1.22122 0.95122 0.97223 0.87184 1.22749 1.01106 0.97230 0.96034 1.22607 0.99456 0.95027 0.97099 1.18743 0.95484 0.72195 0.91433 1.22129 0.95016 1.03805 0.99240 1.21239 0.90547 0.95959 1.45497 0.92139 1.24819 0.97728 0.95789 0.95514 1.69898 1.33486 1.00876 1.48830 0.86530 0.85623 0.77322 0.78201 1.20810 1.19982 1.21311 0.92600 0.91955 0.88872 0.91865 0.90757 0.91835 0.88975 0.91919 0.92659 0.92063 0.92862 0.91103 0.91768 0.88460 0.93657 0.93866 0.97399 0.88988 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.37 37.16 0.31 -2.57 16 2 C 0.14 2.16 1.13 -90.62 -0.10 2.06 16 3 C -0.14 -1.62 8.85 37.16 0.33 -1.29 16 4 C -0.18 -2.79 8.37 37.16 0.31 -2.48 16 5 O -0.38 -7.28 9.46 -40.31 -0.38 -7.66 16 6 C 0.66 14.94 7.41 54.05 0.40 15.35 16 7 O -0.56 -13.89 10.21 -19.29 -0.20 -14.08 16 8 N -0.59 -13.26 2.81 -162.76 -0.46 -13.71 16 9 C 0.11 1.98 6.90 -2.53 -0.02 1.97 16 10 C -0.13 -2.43 7.08 -24.59 -0.17 -2.60 16 11 C -0.10 -2.29 5.50 -24.90 -0.14 -2.42 16 12 C 0.30 7.45 0.52 -131.99 -0.07 7.38 16 13 C -0.14 -3.61 8.22 37.16 0.31 -3.30 16 14 C -0.49 -13.62 7.44 -34.44 -0.26 -13.87 16 15 H 0.06 1.79 7.42 -52.49 -0.39 1.40 16 16 C 0.06 1.69 4.84 -17.82 -0.09 1.60 16 17 N -0.89 -24.22 9.97 55.43 0.55 -23.67 16 18 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 1.81 5.88 -51.93 -0.31 1.51 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.73 5.88 -51.93 -0.31 1.43 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.04 8.10 -51.92 -0.42 0.62 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 2.38 6.30 -51.93 -0.33 2.05 16 36 H 0.04 0.95 7.85 -51.93 -0.41 0.55 16 37 H 0.04 1.15 7.07 -51.93 -0.37 0.78 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -29.51 310.56 -6.64 -36.15 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.63 Total: 1.86 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 0.81 Total: -0.19 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.09 Total: -37.38 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.58 Total: -21.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.51 -6.64 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.798 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds