Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46979 * 2 1 4 4 C 1.53004 * 109.46720 * 240.00346 * 2 1 3 5 5 O 1.45194 * 109.47588 * 120.00270 * 2 1 3 6 6 C 1.34635 * 117.00061 * 59.99430 * 5 2 1 7 7 O 1.21518 * 119.99773 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00495 * 180.02562 * 6 5 2 9 9 C 1.47428 * 125.64692 * 5.00646 * 8 6 5 10 10 C 1.54903 * 104.83566 * 155.88805 * 9 8 6 11 11 C 1.55157 * 101.57899 * 37.01222 * 10 9 8 12 12 C 1.47019 * 125.65359 * 185.02653 * 8 6 5 13 13 C 1.53002 * 110.01023 * 61.55016 * 12 8 6 14 14 C 1.50700 * 109.88052 * 300.45695 * 12 8 6 15 15 H 1.07995 * 120.00271 * 5.08638 * 14 12 8 16 16 C 1.37887 * 119.99905 * 185.08300 * 14 12 8 17 17 N 1.31515 * 119.99604 * 353.99261 * 16 14 12 18 18 Si 1.86796 * 119.99948 * 173.99152 * 16 14 12 19 19 H 1.48493 * 109.47258 * 270.00097 * 18 16 14 20 20 H 1.48506 * 109.47231 * 30.00309 * 18 16 14 21 21 H 1.48499 * 109.46919 * 149.99932 * 18 16 14 22 22 H 1.09003 * 109.47084 * 299.99865 * 1 2 3 23 23 H 1.08998 * 109.47452 * 59.99621 * 1 2 3 24 24 H 1.08999 * 109.47389 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47128 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47427 * 300.00088 * 3 2 1 27 27 H 1.08997 * 109.47642 * 60.00537 * 3 2 1 28 28 H 1.08995 * 109.47063 * 299.99492 * 4 2 1 29 29 H 1.08998 * 109.47132 * 59.99836 * 4 2 1 30 30 H 1.08999 * 109.47098 * 179.97438 * 4 2 1 31 31 H 1.09007 * 110.36717 * 37.04730 * 9 8 6 32 32 H 1.09001 * 110.45712 * 274.77841 * 9 8 6 33 33 H 1.08997 * 111.00732 * 278.93230 * 10 9 8 34 34 H 1.08999 * 111.00500 * 155.08357 * 10 9 8 35 35 H 1.09003 * 110.71748 * 206.13873 * 11 10 9 36 36 H 1.09002 * 110.72480 * 82.86030 * 11 10 9 37 37 H 1.08995 * 109.47034 * 298.19879 * 13 12 8 38 38 H 1.09001 * 109.47094 * 58.20272 * 13 12 8 39 39 H 1.09006 * 109.46873 * 178.20437 * 13 12 8 40 40 H 0.97002 * 119.99144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9515 -2.5096 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 2.8290 -2.1135 3.5521 10 6 2.5217 -3.0642 4.7358 11 6 2.4655 -4.4411 4.0228 12 6 1.8358 -4.0974 2.6565 13 6 2.4988 -4.9265 1.5547 14 6 0.3556 -4.3788 2.6890 15 1 -0.3488 -3.5916 2.4648 16 6 -0.0993 -5.6416 3.0050 17 7 0.7559 -6.6283 3.1620 18 14 -1.9300 -5.9506 3.2101 19 1 -2.3140 -5.7279 4.6272 20 1 -2.6901 -5.0184 2.3390 21 1 -2.2416 -7.3511 2.8270 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 -1.7488 -1.2493 29 1 1.6765 -0.2073 -2.1393 30 1 3.1299 -0.7208 -1.2496 31 1 2.4911 -1.1025 3.7799 32 1 3.8964 -2.1151 3.3314 33 1 1.5625 -2.8215 5.1930 34 1 3.3224 -3.0394 5.4749 35 1 1.8328 -5.1359 4.5752 36 1 3.4678 -4.8498 3.8937 37 1 2.0531 -4.6746 0.5924 38 1 3.5665 -4.7087 1.5287 39 1 2.3490 -5.9869 1.7579 40 1 0.4358 -7.5165 3.3847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = -97.162984 kcal Electronic energy + Delta-G solvation = -20830.938287 eV Core-core repulsion = 17838.247444 eV Total energy + Delta-G solvation = -2992.690842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62866 -39.70203 -37.23719 -35.26905 -34.57694 -32.04797 -31.54080 -28.32342 -28.22870 -27.33476 -26.17554 -24.34833 -22.40325 -21.15865 -20.02356 -18.88110 -17.84948 -17.22631 -17.04307 -16.70063 -15.90022 -15.65622 -15.16502 -14.69888 -14.48771 -14.17624 -13.85417 -13.64711 -13.34909 -13.23284 -13.06558 -12.86394 -12.82076 -12.79669 -12.73162 -12.52296 -12.34610 -12.24601 -12.08753 -12.00198 -11.70182 -11.32392 -11.23290 -10.96906 -10.70566 -10.37463 -9.32475 -8.07581 -6.16684 1.37171 1.39277 1.42687 1.50694 2.10816 2.44388 3.16822 3.25570 3.84579 3.86743 3.96293 4.01627 4.23309 4.33842 4.57650 4.63890 4.68560 4.72397 4.78782 4.84691 4.86943 4.89153 4.92337 4.92643 5.04549 5.15010 5.27780 5.32513 5.34748 5.42897 5.51902 5.54581 5.64781 5.68536 5.90531 6.10656 6.35180 6.76622 7.01860 7.44637 7.71617 8.93963 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.007814 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.573875 B = 3582.283685 C = 4122.448999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.120 3.880 3 C -0.128 4.128 4 C -0.176 4.176 5 O -0.373 6.373 6 C 0.654 3.346 7 O -0.589 6.589 8 N -0.598 5.598 9 C 0.104 3.896 10 C -0.120 4.120 11 C -0.099 4.099 12 C 0.294 3.706 13 C -0.130 4.130 14 C -0.510 4.510 15 H 0.029 0.971 16 C 0.028 3.972 17 N -0.901 5.901 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.280 1.280 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 13.067 -1.117 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.084 3.916 3 C -0.185 4.185 4 C -0.234 4.234 5 O -0.289 6.289 6 C 0.408 3.592 7 O -0.480 6.480 8 N -0.338 5.338 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.138 4.138 12 C 0.213 3.787 13 C -0.189 4.189 14 C -0.549 4.549 15 H 0.047 0.953 16 C -0.172 4.172 17 N -0.540 5.540 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.205 1.205 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.993 12.809 -1.442 13.823 hybrid contribution -1.285 -0.694 -0.236 1.480 sum 3.708 12.115 -1.678 12.780 Atomic orbital electron populations 1.22439 0.94804 1.03017 1.03234 1.22387 0.94208 0.93118 0.81892 1.21830 1.02365 0.90015 1.04276 1.22433 1.01421 1.01910 0.97601 1.86270 1.71854 1.23442 1.47336 1.17717 0.79050 0.80335 0.82060 1.90846 1.41778 1.70848 1.44543 1.47795 1.56187 1.11347 1.18441 1.22378 0.95899 0.97867 0.85650 1.22726 1.02331 0.94243 0.96505 1.22415 0.98941 0.96818 0.95636 1.18679 0.93926 0.73640 0.92494 1.21962 0.95975 1.02804 0.98178 1.21279 0.91919 0.95509 1.46186 0.95269 1.25343 1.00827 0.95632 0.95367 1.69964 1.34461 1.00932 1.48683 0.85790 0.81823 0.76949 0.78393 1.19391 1.21572 1.20532 0.92361 0.88758 0.93253 0.91057 0.87724 0.91274 0.93094 0.88801 0.92015 0.90367 0.90603 0.91981 0.87549 0.91037 0.92663 0.96675 0.95544 0.90821 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.52 8.37 71.98 0.60 -4.92 16 2 C 0.12 3.63 1.13 -10.79 -0.01 3.62 16 3 C -0.13 -2.56 8.85 71.98 0.64 -1.93 16 4 C -0.18 -5.28 8.37 71.98 0.60 -4.67 16 5 O -0.37 -14.14 9.46 -55.44 -0.52 -14.67 16 6 C 0.65 30.13 7.41 129.79 0.96 31.10 16 7 O -0.59 -30.86 10.21 19.78 0.20 -30.66 16 8 N -0.60 -27.01 2.81 -899.28 -2.53 -29.54 16 9 C 0.10 3.62 6.90 86.85 0.60 4.22 16 10 C -0.12 -4.10 7.08 31.98 0.23 -3.88 16 11 C -0.10 -4.32 5.50 31.78 0.17 -4.15 16 12 C 0.29 14.72 0.52 3.21 0.00 14.72 16 13 C -0.13 -6.73 8.22 71.98 0.59 -6.14 16 14 C -0.51 -29.04 7.44 25.60 0.19 -28.85 16 15 H 0.03 1.80 7.42 -2.91 -0.02 1.78 16 16 C 0.03 1.55 4.84 84.66 0.41 1.96 16 17 N -0.90 -49.62 9.97 21.45 0.21 -49.41 16 18 Si 0.94 45.19 29.54 68.60 2.03 47.21 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.05 1.99 5.88 -2.39 -0.01 1.98 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.97 5.88 -2.39 -0.01 1.96 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.45 8.10 -2.38 -0.02 2.43 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 3.49 6.30 -2.39 -0.02 3.48 16 36 H 0.05 2.25 7.85 -2.39 -0.02 2.23 16 37 H 0.01 0.80 7.07 -2.39 -0.02 0.78 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 4.03 6.22 -2.38 -0.01 4.01 16 40 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -66.92 310.56 5.38 -61.55 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.00 Total: 14.43 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.99 Total: 1.09 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.32 Total: -78.95 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.32 Total: -45.33 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.92 5.38 -61.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.614 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds