Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47325 * 2 1 4 4 C 1.52993 * 109.47090 * 239.99960 * 2 1 3 5 5 C 1.52998 * 109.46854 * 119.99768 * 2 1 3 6 6 N 1.46502 * 109.47105 * 66.11899 * 5 2 1 7 7 C 1.34006 * 125.55860 * 78.87484 * 6 5 2 8 8 O 1.21502 * 123.07590 * 359.93876 * 7 6 5 9 9 O 1.33774 * 113.85234 * 179.97438 * 7 6 5 10 10 C 1.45701 * 109.48246 * 359.97438 * 9 7 6 11 11 C 1.47094 * 125.55748 * 258.56410 * 6 5 2 12 12 C 1.53007 * 110.56277 * 61.46733 * 11 6 5 13 13 C 1.52992 * 110.56532 * 298.60952 * 11 6 5 14 14 C 1.50708 * 109.46860 * 180.02562 * 13 11 6 15 15 H 1.08000 * 119.99816 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99725 * 180.02562 * 14 13 11 17 17 N 1.31505 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99636 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46888 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46722 * 119.99820 * 18 16 14 21 21 H 1.48501 * 109.46759 * 239.99765 * 18 16 14 22 22 H 1.09008 * 109.47034 * 288.36596 * 1 2 3 23 23 H 1.08999 * 109.46871 * 48.35875 * 1 2 3 24 24 H 1.08996 * 109.47468 * 168.36142 * 1 2 3 25 25 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47059 * 299.99989 * 3 2 1 27 27 H 1.09004 * 109.46969 * 59.99916 * 3 2 1 28 28 H 1.09002 * 109.46990 * 306.37674 * 4 2 1 29 29 H 1.08999 * 109.47397 * 66.38035 * 4 2 1 30 30 H 1.09000 * 109.47428 * 186.38223 * 4 2 1 31 31 H 1.08992 * 109.47528 * 306.11523 * 5 2 1 32 32 H 1.09003 * 109.47122 * 186.11304 * 5 2 1 33 33 H 1.09004 * 110.52316 * 118.62949 * 10 9 7 34 34 H 1.08993 * 110.52026 * 241.23352 * 10 9 7 35 35 H 1.09002 * 109.47144 * 61.47249 * 12 11 6 36 36 H 1.08997 * 109.46773 * 181.48138 * 12 11 6 37 37 H 1.08998 * 109.46702 * 301.47909 * 12 11 6 38 38 H 1.09000 * 109.47240 * 299.99642 * 13 11 6 39 39 H 1.08997 * 109.47332 * 60.00479 * 13 11 6 40 40 H 0.97001 * 120.00190 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.6755 -2.1384 1.1780 7 6 2.3109 -3.0710 0.4554 8 8 3.2812 -2.8282 -0.2345 9 8 1.7789 -4.2938 0.5625 10 6 0.6323 -4.2479 1.4604 11 6 0.5563 -2.7708 1.8929 12 6 -0.7753 -2.1541 1.4595 13 6 0.7431 -2.6412 3.4058 14 6 -0.4151 -3.2968 4.1129 15 1 -1.2055 -3.7593 3.5404 16 6 -0.4660 -3.3053 5.4908 17 7 0.4962 -2.7418 6.1878 18 14 -1.9020 -4.1174 6.3673 19 1 -2.8443 -4.6734 5.3632 20 1 -1.3975 -5.2130 7.2334 21 1 -2.6058 -3.1107 7.2018 22 1 -0.3633 0.3238 0.9754 23 1 -0.3633 0.6829 -0.7680 24 1 -0.3634 -1.0065 -0.2073 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.5864 -1.7107 -1.3081 29 1 1.7729 -0.1458 -2.1355 30 1 3.1240 -0.8212 -1.1940 31 1 1.5900 -0.2745 2.1358 32 1 3.1244 -0.6274 1.3057 33 1 -0.2763 -4.5425 0.9352 34 1 0.7982 -4.8904 2.3250 35 1 -0.9243 -2.3238 0.3931 36 1 -1.5888 -2.6167 2.0184 37 1 -0.7611 -1.0825 1.6583 38 1 1.6718 -3.1298 3.7004 39 1 0.7853 -1.5865 3.6777 40 1 0.4602 -2.7475 7.1571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260395935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = -76.108812 kcal Electronic energy + Delta-G solvation = -20901.801996 eV Core-core repulsion = 17910.024131 eV Total energy + Delta-G solvation = -2991.777865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32196 -37.68542 -36.83653 -34.90453 -32.99295 -31.40018 -28.26577 -27.18529 -26.96002 -26.20197 -25.65695 -23.65390 -20.95845 -20.14388 -18.44954 -16.81104 -16.42474 -16.31798 -15.60383 -14.82004 -14.64839 -14.57008 -14.09711 -13.96923 -13.41344 -13.10049 -12.75305 -12.54362 -12.37360 -12.19640 -11.94687 -11.83166 -11.50979 -11.19761 -11.09881 -11.00249 -10.79980 -10.64844 -10.48296 -10.30642 -10.18405 -9.96895 -9.85331 -9.77365 -9.29125 -8.56860 -8.19877 -6.20607 -4.25695 3.09239 3.19372 3.28610 3.29486 3.31392 4.08162 4.30332 4.85694 4.91203 4.95906 5.12402 5.17317 5.33572 5.40411 5.63608 5.69578 5.71872 5.86170 5.89211 5.93690 6.02568 6.05188 6.06518 6.16056 6.21448 6.26942 6.33353 6.46786 6.49746 6.58867 6.69692 6.72558 7.04561 7.35409 7.43245 7.73654 7.98824 8.11439 8.63000 8.79191 9.40162 10.90226 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.006932 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.585336 B = 4038.297722 C = 4463.631649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.131 4.131 5 C 0.160 3.840 6 N -0.614 5.614 7 C 0.641 3.359 8 O -0.543 6.543 9 O -0.342 6.342 10 C 0.054 3.946 11 C 0.124 3.876 12 C -0.155 4.155 13 C 0.030 3.970 14 C -0.526 4.526 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 4.747 -9.318 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.188 4.188 5 C 0.039 3.961 6 N -0.359 5.359 7 C 0.396 3.604 8 O -0.431 6.431 9 O -0.253 6.253 10 C -0.020 4.020 11 C 0.040 3.960 12 C -0.212 4.212 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.199 4.697 -9.591 10.746 hybrid contribution -0.881 -0.365 0.808 1.250 sum -2.080 4.332 -8.783 10.011 Atomic orbital electron populations 1.22597 0.94568 1.02961 1.01292 1.21021 0.96308 0.95397 0.96215 1.21798 1.01031 0.94952 1.01688 1.21927 1.02173 0.99279 0.95452 1.21300 1.00157 0.77155 0.97515 1.48178 1.31825 1.08573 1.47291 1.18438 0.82543 0.79705 0.79715 1.90943 1.26893 1.80779 1.44464 1.87156 1.45198 1.29127 1.63799 1.24520 0.86558 0.97954 0.92995 1.22082 0.86657 0.90077 0.97164 1.22664 0.96567 1.02847 0.99090 1.19382 0.98049 0.98501 0.84844 1.21094 1.06797 1.37285 0.91289 0.91903 1.24992 0.96090 0.95219 0.97693 1.69961 1.32299 1.43615 1.06672 0.86519 0.82361 0.79233 0.79823 1.19575 1.20927 1.20956 0.91985 0.93534 0.90746 0.92582 0.92622 0.92513 0.93133 0.93966 0.91448 0.89323 0.90776 0.88907 0.86721 0.93425 0.90069 0.90614 0.95798 0.95433 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 6.68 37.16 0.25 -1.76 16 2 C -0.09 -1.19 0.85 -154.51 -0.13 -1.32 16 3 C -0.14 -1.54 8.44 37.16 0.31 -1.23 16 4 C -0.13 -1.95 6.82 37.15 0.25 -1.69 16 5 C 0.16 2.53 4.68 -4.04 -0.02 2.51 16 6 N -0.61 -11.03 2.15 -164.01 -0.35 -11.38 16 7 C 0.64 12.87 7.14 53.71 0.38 13.25 16 8 O -0.54 -11.85 14.80 -19.11 -0.28 -12.13 16 9 O -0.34 -6.71 11.09 -37.84 -0.42 -7.13 16 10 C 0.05 0.95 7.11 37.73 0.27 1.22 16 11 C 0.12 2.27 0.84 -130.92 -0.11 2.16 16 12 C -0.15 -2.44 6.53 37.16 0.24 -2.20 16 13 C 0.03 0.68 4.09 -27.88 -0.11 0.56 16 14 C -0.53 -12.71 7.67 -34.43 -0.26 -12.97 16 15 H 0.06 1.43 6.49 -52.49 -0.34 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 18 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H 0.06 0.79 6.37 -51.92 -0.33 0.46 16 23 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 24 H 0.07 1.01 4.40 -51.93 -0.23 0.78 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.85 6.05 -51.93 -0.31 0.53 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.10 6.96 -51.93 -0.36 0.74 16 31 H 0.09 1.39 7.23 -51.93 -0.38 1.01 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.37 7.73 -51.93 -0.40 0.97 16 34 H 0.11 2.09 7.41 -51.93 -0.38 1.71 16 35 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 36 H 0.08 1.33 6.42 -51.93 -0.33 1.00 16 37 H 0.08 1.16 4.82 -51.93 -0.25 0.91 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.66 7.36 -51.93 -0.38 0.28 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -28.25 301.35 -5.95 -34.20 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.13 Total: 0.88 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 0.97 Total: 0.05 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.38 Total: -35.13 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.70 Total: -19.26 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.25 -5.95 -34.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.908 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds