Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47325 * 2 1 4 4 C 1.52993 * 109.47090 * 239.99960 * 2 1 3 5 5 C 1.52998 * 109.46854 * 119.99768 * 2 1 3 6 6 N 1.46502 * 109.47105 * 66.11899 * 5 2 1 7 7 C 1.34006 * 125.55860 * 78.87484 * 6 5 2 8 8 O 1.21502 * 123.07590 * 359.93876 * 7 6 5 9 9 O 1.33774 * 113.85234 * 179.97438 * 7 6 5 10 10 C 1.45701 * 109.48246 * 359.97438 * 9 7 6 11 11 C 1.47094 * 125.55748 * 258.56410 * 6 5 2 12 12 C 1.53007 * 110.56277 * 61.46733 * 11 6 5 13 13 C 1.52992 * 110.56532 * 298.60952 * 11 6 5 14 14 C 1.50708 * 109.46860 * 180.02562 * 13 11 6 15 15 H 1.08000 * 119.99816 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99725 * 180.02562 * 14 13 11 17 17 N 1.31505 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99636 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46888 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46722 * 119.99820 * 18 16 14 21 21 H 1.48501 * 109.46759 * 239.99765 * 18 16 14 22 22 H 1.09008 * 109.47034 * 288.36596 * 1 2 3 23 23 H 1.08999 * 109.46871 * 48.35875 * 1 2 3 24 24 H 1.08996 * 109.47468 * 168.36142 * 1 2 3 25 25 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47059 * 299.99989 * 3 2 1 27 27 H 1.09004 * 109.46969 * 59.99916 * 3 2 1 28 28 H 1.09002 * 109.46990 * 306.37674 * 4 2 1 29 29 H 1.08999 * 109.47397 * 66.38035 * 4 2 1 30 30 H 1.09000 * 109.47428 * 186.38223 * 4 2 1 31 31 H 1.08992 * 109.47528 * 306.11523 * 5 2 1 32 32 H 1.09003 * 109.47122 * 186.11304 * 5 2 1 33 33 H 1.09004 * 110.52316 * 118.62949 * 10 9 7 34 34 H 1.08993 * 110.52026 * 241.23352 * 10 9 7 35 35 H 1.09002 * 109.47144 * 61.47249 * 12 11 6 36 36 H 1.08997 * 109.46773 * 181.48138 * 12 11 6 37 37 H 1.08998 * 109.46702 * 301.47909 * 12 11 6 38 38 H 1.09000 * 109.47240 * 299.99642 * 13 11 6 39 39 H 1.08997 * 109.47332 * 60.00479 * 13 11 6 40 40 H 0.97001 * 120.00190 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.6755 -2.1384 1.1780 7 6 2.3109 -3.0710 0.4554 8 8 3.2812 -2.8282 -0.2345 9 8 1.7789 -4.2938 0.5625 10 6 0.6323 -4.2479 1.4604 11 6 0.5563 -2.7708 1.8929 12 6 -0.7753 -2.1541 1.4595 13 6 0.7431 -2.6412 3.4058 14 6 -0.4151 -3.2968 4.1129 15 1 -1.2055 -3.7593 3.5404 16 6 -0.4660 -3.3053 5.4908 17 7 0.4962 -2.7418 6.1878 18 14 -1.9020 -4.1174 6.3673 19 1 -2.8443 -4.6734 5.3632 20 1 -1.3975 -5.2130 7.2334 21 1 -2.6058 -3.1107 7.2018 22 1 -0.3633 0.3238 0.9754 23 1 -0.3633 0.6829 -0.7680 24 1 -0.3634 -1.0065 -0.2073 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.5864 -1.7107 -1.3081 29 1 1.7729 -0.1458 -2.1355 30 1 3.1240 -0.8212 -1.1940 31 1 1.5900 -0.2745 2.1358 32 1 3.1244 -0.6274 1.3057 33 1 -0.2763 -4.5425 0.9352 34 1 0.7982 -4.8904 2.3250 35 1 -0.9243 -2.3238 0.3931 36 1 -1.5888 -2.6167 2.0184 37 1 -0.7611 -1.0825 1.6583 38 1 1.6718 -3.1298 3.7004 39 1 0.7853 -1.5865 3.6777 40 1 0.4602 -2.7475 7.1571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = -91.776015 kcal Electronic energy + Delta-G solvation = -20902.481377 eV Core-core repulsion = 17910.024131 eV Total energy + Delta-G solvation = -2992.457246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.82765 -38.94760 -38.44309 -36.40818 -34.76095 -32.96741 -29.69777 -28.59976 -28.13488 -27.54459 -26.89477 -25.47202 -22.44747 -21.68521 -19.67894 -18.48246 -18.02397 -17.93156 -17.15876 -16.38061 -16.21746 -15.86358 -15.40033 -15.23853 -14.77919 -14.65675 -14.31084 -14.03966 -13.73855 -13.50591 -13.19461 -13.02145 -12.92017 -12.82902 -12.59450 -12.31013 -12.27280 -12.13074 -11.81414 -11.68383 -11.57238 -11.49296 -11.34169 -11.17610 -11.02396 -10.55552 -9.68097 -8.17521 -6.27504 1.45471 1.48361 1.58343 1.63153 1.73616 2.43345 2.64135 3.18206 3.42343 3.68982 3.80221 3.98469 4.03242 4.09527 4.32894 4.51942 4.55100 4.67389 4.71961 4.77538 4.81503 4.86947 4.91047 4.99447 5.05177 5.08409 5.20087 5.21481 5.29231 5.39127 5.44489 5.46157 5.52410 5.55021 5.68369 5.82498 6.15806 6.47975 6.86849 7.07549 7.42478 8.94557 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.006932 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.585336 B = 4038.297722 C = 4463.631649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.123 4.123 5 C 0.153 3.847 6 N -0.607 5.607 7 C 0.636 3.364 8 O -0.566 6.566 9 O -0.352 6.352 10 C 0.053 3.947 11 C 0.128 3.872 12 C -0.146 4.146 13 C 0.041 3.959 14 C -0.522 4.522 15 H 0.082 0.918 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.958 3.042 19 H -0.252 1.252 20 H -0.289 1.289 21 H -0.286 1.286 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.080 0.920 38 H -0.016 1.016 39 H 0.006 0.994 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 5.121 -10.475 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.083 4.083 3 C -0.191 4.191 4 C -0.180 4.180 5 C 0.032 3.968 6 N -0.351 5.351 7 C 0.391 3.609 8 O -0.456 6.456 9 O -0.262 6.262 10 C -0.020 4.020 11 C 0.044 3.956 12 C -0.203 4.203 13 C 0.003 3.997 14 C -0.560 4.560 15 H 0.100 0.900 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.784 3.216 19 H -0.175 1.175 20 H -0.215 1.215 21 H -0.212 1.212 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.002 0.998 39 H 0.024 0.976 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.356 5.074 -10.759 12.360 hybrid contribution -0.149 -0.478 1.176 1.278 sum -3.505 4.596 -9.583 11.192 Atomic orbital electron populations 1.22537 0.93435 1.03024 1.02014 1.20984 0.97136 0.96204 0.94015 1.21775 1.00991 0.93360 1.02940 1.21819 1.00566 0.98635 0.97000 1.21524 0.99847 0.76321 0.99076 1.48252 1.31415 1.09093 1.46353 1.18547 0.82462 0.80032 0.79862 1.90920 1.27892 1.81186 1.45610 1.87132 1.45939 1.29058 1.64081 1.24678 0.87258 0.97106 0.93007 1.21958 0.88157 0.91210 0.94319 1.22625 0.94322 1.02884 1.00505 1.19167 0.95960 0.96456 0.88090 1.21509 1.07082 1.36026 0.91418 0.89989 1.25861 0.98497 0.96023 0.98899 1.70105 1.34589 1.45767 1.06765 0.85490 0.79482 0.77878 0.78768 1.17537 1.21539 1.21168 0.91923 0.91569 0.91500 0.92763 0.90899 0.91705 0.95231 0.91888 0.93573 0.89389 0.91699 0.85229 0.87828 0.91051 0.90165 0.90143 0.99750 0.97551 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 6.68 71.98 0.48 -2.99 16 2 C -0.08 -2.09 0.85 -52.18 -0.04 -2.13 16 3 C -0.13 -2.70 8.44 71.98 0.61 -2.09 16 4 C -0.12 -3.49 6.82 71.98 0.49 -3.00 16 5 C 0.15 4.80 4.68 86.38 0.40 5.20 16 6 N -0.61 -21.69 2.15 -904.51 -1.95 -23.64 16 7 C 0.64 25.59 7.14 129.91 0.93 26.52 16 8 O -0.57 -25.05 14.80 19.68 0.29 -24.76 16 9 O -0.35 -13.61 11.09 -47.34 -0.52 -14.13 16 10 C 0.05 1.80 7.11 72.35 0.51 2.31 16 11 C 0.13 4.55 0.84 3.86 0.00 4.55 16 12 C -0.15 -4.25 6.53 71.98 0.47 -3.78 16 13 C 0.04 1.88 4.09 29.85 0.12 2.00 16 14 C -0.52 -24.83 7.67 25.60 0.20 -24.64 16 15 H 0.08 3.53 6.49 -2.91 -0.02 3.51 16 16 C 0.01 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -52.47 13.29 21.45 0.28 -52.18 16 18 Si 0.96 39.96 29.54 68.60 2.03 41.99 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 22 H 0.06 1.42 6.37 -2.38 -0.02 1.41 16 23 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 24 H 0.07 1.61 4.40 -2.39 -0.01 1.60 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.03 0.95 6.05 -2.39 -0.01 0.93 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.50 6.96 -2.39 -0.02 1.48 16 31 H 0.09 2.76 7.23 -2.39 -0.02 2.74 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.13 3.42 7.73 -2.39 -0.02 3.40 16 34 H 0.10 3.72 7.41 -2.39 -0.02 3.70 16 35 H 0.07 1.78 6.36 -2.39 -0.02 1.76 16 36 H 0.08 2.38 6.42 -2.39 -0.02 2.36 16 37 H 0.08 2.28 4.82 -2.39 -0.01 2.27 16 38 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 39 H 0.01 0.31 7.36 -2.39 -0.02 0.29 16 40 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -61.30 301.35 5.79 -55.51 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.03 Total: 14.51 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.63 Total: 2.70 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.66 Total: -75.83 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.23 Total: -38.89 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -61.30 5.79 -55.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.263 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds