Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46919 * 2 1 4 4 C 1.52996 * 109.47381 * 239.99615 * 2 1 3 5 5 C 1.53009 * 109.46769 * 119.99465 * 2 1 3 6 6 N 1.46494 * 109.46956 * 64.76680 * 5 2 1 7 7 C 1.34008 * 125.56530 * 73.46395 * 6 5 2 8 8 O 1.21517 * 123.06539 * 0.02562 * 7 6 5 9 9 O 1.33763 * 113.86047 * 179.97438 * 7 6 5 10 10 C 1.45703 * 109.47854 * 359.97438 * 9 7 6 11 11 C 1.47100 * 125.55832 * 253.43693 * 6 5 2 12 12 C 1.52998 * 110.56597 * 298.74312 * 11 6 5 13 13 C 1.53002 * 110.56254 * 61.45079 * 11 6 5 14 14 C 1.50699 * 109.46868 * 179.97438 * 13 11 6 15 15 H 1.07999 * 119.99853 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99676 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00406 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99874 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.46833 * 270.00201 * 18 16 14 20 20 H 1.48503 * 109.46824 * 30.00066 * 18 16 14 21 21 H 1.48500 * 109.47171 * 150.00110 * 18 16 14 22 22 H 1.09009 * 109.47188 * 300.00413 * 1 2 3 23 23 H 1.09003 * 109.46933 * 60.00275 * 1 2 3 24 24 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46900 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47059 * 299.99256 * 3 2 1 27 27 H 1.08994 * 109.47727 * 60.00138 * 3 2 1 28 28 H 1.09002 * 109.46840 * 305.70751 * 4 2 1 29 29 H 1.08995 * 109.46977 * 65.70465 * 4 2 1 30 30 H 1.08997 * 109.47270 * 185.71142 * 4 2 1 31 31 H 1.08997 * 109.47401 * 304.76003 * 5 2 1 32 32 H 1.09000 * 109.46809 * 184.76061 * 5 2 1 33 33 H 1.08998 * 110.51657 * 241.37029 * 10 9 7 34 34 H 1.08997 * 110.52121 * 118.63057 * 10 9 7 35 35 H 1.09000 * 109.46934 * 188.69433 * 12 11 6 36 36 H 1.08999 * 109.46933 * 308.69413 * 12 11 6 37 37 H 1.08998 * 109.46908 * 68.68996 * 12 11 6 38 38 H 1.08998 * 109.47130 * 59.99646 * 13 11 6 39 39 H 1.09003 * 109.46934 * 299.99738 * 13 11 6 40 40 H 0.97008 * 119.99687 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 7 1.6476 -2.1315 1.1935 7 6 2.1910 -3.0607 0.3953 8 8 3.0907 -2.8201 -0.3853 9 8 1.6532 -4.2772 0.5369 10 6 0.6050 -4.2304 1.5478 11 6 0.5930 -2.7588 2.0048 12 6 0.9265 -2.6532 3.4943 13 6 -0.7641 -2.1157 1.7125 14 6 -1.8248 -2.7762 2.5549 15 1 -1.5576 -3.5745 3.2314 16 6 -3.1362 -2.3606 2.4627 17 7 -3.4615 -1.3881 1.6393 18 14 -4.4510 -3.1788 3.5074 19 1 -5.0244 -4.3317 2.7677 20 1 -3.8477 -3.6562 4.7776 21 1 -5.5258 -2.1990 3.8074 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.5957 -1.7152 -1.3016 29 1 1.7626 -0.1520 -2.1362 30 1 3.1252 -0.8107 -1.1995 31 1 1.6087 -0.2589 2.1373 32 1 3.1266 -0.6479 1.2931 33 1 0.8490 -4.8882 2.3820 34 1 -0.3570 -4.5028 1.1137 35 1 0.2200 -3.2529 4.0681 36 1 1.9384 -3.0197 3.6669 37 1 0.8587 -1.6118 3.8088 38 1 -1.0069 -2.2431 0.6575 39 1 -0.7210 -1.0526 1.9496 40 1 -2.7787 -0.9630 1.0970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260395937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = -81.091120 kcal Electronic energy + Delta-G solvation = -21150.325111 eV Core-core repulsion = 18158.331197 eV Total energy + Delta-G solvation = -2991.993914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41780 -37.65263 -36.93784 -34.97011 -33.33379 -31.18147 -27.71737 -27.06629 -26.66083 -26.35055 -26.04613 -23.43978 -21.02360 -20.35131 -18.41550 -17.01825 -16.76130 -16.36431 -15.68097 -14.92860 -14.61049 -14.19182 -13.90014 -13.85920 -13.32956 -13.25593 -12.82041 -12.61747 -12.30958 -12.14466 -11.95657 -11.64478 -11.34347 -11.33351 -11.19328 -11.10901 -10.88909 -10.58761 -10.37472 -10.23620 -10.16427 -10.11682 -9.91407 -9.67441 -8.70056 -8.49134 -8.28478 -6.52496 -4.25854 2.99780 3.23238 3.34530 3.36238 3.51460 3.99584 4.40396 4.77546 4.93179 5.02158 5.22398 5.26007 5.26841 5.38243 5.65598 5.69317 5.78708 5.87530 5.93049 5.96524 5.98366 6.13421 6.13820 6.17260 6.31191 6.35490 6.42539 6.48369 6.50105 6.56544 6.78025 6.81251 6.98434 7.07963 7.21479 7.85383 7.97694 8.24663 8.54486 8.68043 9.46392 10.87621 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.008163 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.370717 B = 3429.406531 C = 4113.661027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.130 4.130 5 C 0.163 3.837 6 N -0.616 5.616 7 C 0.640 3.360 8 O -0.538 6.538 9 O -0.342 6.342 10 C 0.056 3.944 11 C 0.127 3.873 12 C -0.135 4.135 13 C 0.011 3.989 14 C -0.608 4.608 15 H 0.055 0.945 16 C 0.022 3.978 17 N -0.905 5.905 18 Si 1.068 2.932 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.284 1.284 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.030 0.970 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 1.223 1.493 8.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.042 3.958 6 N -0.362 5.362 7 C 0.395 3.605 8 O -0.426 6.426 9 O -0.252 6.252 10 C -0.019 4.019 11 C 0.043 3.957 12 C -0.193 4.193 13 C -0.026 4.026 14 C -0.647 4.647 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.540 5.540 18 Si 0.896 3.104 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.210 1.210 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.734 1.158 1.337 6.962 hybrid contribution 1.419 0.082 -0.215 1.438 sum 8.153 1.240 1.122 8.323 Atomic orbital electron populations 1.22452 0.93422 1.04532 1.01028 1.21038 0.96977 0.95115 0.95813 1.21789 1.00551 0.95220 1.01804 1.22014 1.01642 0.99692 0.95348 1.21256 0.99085 0.77327 0.98119 1.48230 1.37819 1.09227 1.40873 1.18431 0.81706 0.79695 0.80715 1.90974 1.31134 1.80392 1.40071 1.87166 1.50669 1.29672 1.57706 1.24495 0.90545 0.96795 0.90042 1.21960 0.90433 0.91441 0.91844 1.21965 1.00190 1.03097 0.94074 1.19943 0.88715 0.96917 0.97011 1.21956 0.94008 1.22215 1.26474 0.92679 1.25776 0.98813 0.95951 0.97789 1.70761 1.37793 1.22307 1.23149 0.83539 0.75576 0.75803 0.75437 1.21398 1.21393 1.21004 0.92571 0.93618 0.89819 0.92857 0.92500 0.92694 0.92599 0.94183 0.91771 0.89801 0.91174 0.88720 0.86741 0.89997 0.93841 0.92100 0.96019 0.95222 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 6.90 37.16 0.26 -2.49 16 2 C -0.09 -1.37 0.85 -154.51 -0.13 -1.50 16 3 C -0.14 -1.72 8.47 37.16 0.31 -1.41 16 4 C -0.13 -2.19 6.71 37.16 0.25 -1.94 16 5 C 0.16 2.56 4.70 -4.04 -0.02 2.54 16 6 N -0.62 -10.98 2.08 -164.01 -0.34 -11.32 16 7 C 0.64 12.71 7.22 53.71 0.39 13.09 16 8 O -0.54 -11.56 14.05 -19.12 -0.27 -11.83 16 9 O -0.34 -6.65 11.09 -37.81 -0.42 -7.07 16 10 C 0.06 0.98 7.11 37.73 0.27 1.24 16 11 C 0.13 2.32 0.83 -130.92 -0.11 2.21 16 12 C -0.14 -2.19 8.06 37.16 0.30 -1.89 16 13 C 0.01 0.24 1.63 -27.88 -0.05 0.20 16 14 C -0.61 -14.63 7.77 -34.44 -0.27 -14.90 16 15 H 0.05 1.27 6.51 -52.49 -0.34 0.93 16 16 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 17 N -0.90 -25.24 13.65 55.43 0.76 -24.48 16 18 Si 1.07 23.09 29.90 -169.99 -5.08 18.01 16 19 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H 0.06 1.00 7.21 -51.92 -0.37 0.62 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.68 3.90 -51.93 -0.20 1.48 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.09 5.60 -51.93 -0.29 0.80 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.11 7.01 -51.93 -0.36 0.75 16 31 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.41 7.74 -51.93 -0.40 1.01 16 34 H 0.11 2.10 7.41 -51.93 -0.39 1.71 16 35 H 0.08 1.34 6.76 -51.93 -0.35 0.99 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 38 H 0.02 0.53 6.10 -51.93 -0.32 0.21 16 39 H 0.03 0.67 5.78 -51.93 -0.30 0.37 16 40 H 0.27 7.50 7.22 -40.82 -0.29 7.21 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -28.08 301.35 -5.88 -33.96 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.17 Total: 2.55 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 1.11 Total: -4.37 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.42 Total: -35.80 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.69 Total: -18.90 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.08 Total: 18.01 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.08 -5.88 -33.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.127 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds