Wall clock time and date at job start Mon Mar 30 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46919 * 2 1 4 4 C 1.52996 * 109.47381 * 239.99615 * 2 1 3 5 5 C 1.53009 * 109.46769 * 119.99465 * 2 1 3 6 6 N 1.46494 * 109.46956 * 64.76680 * 5 2 1 7 7 C 1.34008 * 125.56530 * 73.46395 * 6 5 2 8 8 O 1.21517 * 123.06539 * 0.02562 * 7 6 5 9 9 O 1.33763 * 113.86047 * 179.97438 * 7 6 5 10 10 C 1.45703 * 109.47854 * 359.97438 * 9 7 6 11 11 C 1.47100 * 125.55832 * 253.43693 * 6 5 2 12 12 C 1.52998 * 110.56597 * 298.74312 * 11 6 5 13 13 C 1.53002 * 110.56254 * 61.45079 * 11 6 5 14 14 C 1.50699 * 109.46868 * 179.97438 * 13 11 6 15 15 H 1.07999 * 119.99853 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99676 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00406 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99874 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.46833 * 270.00201 * 18 16 14 20 20 H 1.48503 * 109.46824 * 30.00066 * 18 16 14 21 21 H 1.48500 * 109.47171 * 150.00110 * 18 16 14 22 22 H 1.09009 * 109.47188 * 300.00413 * 1 2 3 23 23 H 1.09003 * 109.46933 * 60.00275 * 1 2 3 24 24 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46900 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47059 * 299.99256 * 3 2 1 27 27 H 1.08994 * 109.47727 * 60.00138 * 3 2 1 28 28 H 1.09002 * 109.46840 * 305.70751 * 4 2 1 29 29 H 1.08995 * 109.46977 * 65.70465 * 4 2 1 30 30 H 1.08997 * 109.47270 * 185.71142 * 4 2 1 31 31 H 1.08997 * 109.47401 * 304.76003 * 5 2 1 32 32 H 1.09000 * 109.46809 * 184.76061 * 5 2 1 33 33 H 1.08998 * 110.51657 * 241.37029 * 10 9 7 34 34 H 1.08997 * 110.52121 * 118.63057 * 10 9 7 35 35 H 1.09000 * 109.46934 * 188.69433 * 12 11 6 36 36 H 1.08999 * 109.46933 * 308.69413 * 12 11 6 37 37 H 1.08998 * 109.46908 * 68.68996 * 12 11 6 38 38 H 1.08998 * 109.47130 * 59.99646 * 13 11 6 39 39 H 1.09003 * 109.46934 * 299.99738 * 13 11 6 40 40 H 0.97008 * 119.99687 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 7 1.6476 -2.1315 1.1935 7 6 2.1910 -3.0607 0.3953 8 8 3.0907 -2.8201 -0.3853 9 8 1.6532 -4.2772 0.5369 10 6 0.6050 -4.2304 1.5478 11 6 0.5930 -2.7588 2.0048 12 6 0.9265 -2.6532 3.4943 13 6 -0.7641 -2.1157 1.7125 14 6 -1.8248 -2.7762 2.5549 15 1 -1.5576 -3.5745 3.2314 16 6 -3.1362 -2.3606 2.4627 17 7 -3.4615 -1.3881 1.6393 18 14 -4.4510 -3.1788 3.5074 19 1 -5.0244 -4.3317 2.7677 20 1 -3.8477 -3.6562 4.7776 21 1 -5.5258 -2.1990 3.8074 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.5957 -1.7152 -1.3016 29 1 1.7626 -0.1520 -2.1362 30 1 3.1252 -0.8107 -1.1995 31 1 1.6087 -0.2589 2.1373 32 1 3.1266 -0.6479 1.2931 33 1 0.8490 -4.8882 2.3820 34 1 -0.3570 -4.5028 1.1137 35 1 0.2200 -3.2529 4.0681 36 1 1.9384 -3.0197 3.6669 37 1 0.8587 -1.6118 3.8088 38 1 -1.0069 -2.2431 0.6575 39 1 -0.7210 -1.0526 1.9496 40 1 -2.7787 -0.9630 1.0970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:08 Heat of formation + Delta-G solvation = -96.388293 kcal Electronic energy + Delta-G solvation = -21150.988447 eV Core-core repulsion = 18158.331197 eV Total energy + Delta-G solvation = -2992.657249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.91119 -39.03248 -38.51662 -36.49425 -35.08955 -32.76889 -29.22547 -28.41555 -27.92945 -27.88435 -27.46881 -25.25080 -22.52816 -21.87870 -19.75591 -18.82771 -18.22802 -17.92882 -17.20350 -16.45230 -15.97647 -15.61856 -15.61679 -15.29285 -14.82095 -14.75156 -14.22467 -14.11154 -13.88557 -13.52097 -13.21591 -13.10950 -12.92485 -12.68311 -12.65785 -12.51340 -12.42231 -12.01896 -11.90520 -11.76420 -11.65920 -11.56649 -11.44864 -11.18883 -10.53470 -10.44771 -9.75453 -8.55826 -6.28398 1.53474 1.61181 1.66765 1.70579 1.82409 2.53149 2.64485 3.23449 3.35950 3.61323 3.73214 3.90743 3.95675 4.01778 4.25820 4.43822 4.48358 4.58854 4.62670 4.64707 4.74739 4.79193 4.86800 4.89412 4.93935 4.99147 5.05497 5.15339 5.22383 5.23613 5.25770 5.32347 5.45050 5.50711 5.60015 6.02923 6.28820 6.41089 6.66373 7.02078 7.51747 8.84937 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.008163 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.370717 B = 3429.406531 C = 4113.661027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.120 4.120 5 C 0.156 3.844 6 N -0.608 5.608 7 C 0.635 3.365 8 O -0.559 6.559 9 O -0.352 6.352 10 C 0.056 3.944 11 C 0.128 3.872 12 C -0.128 4.128 13 C 0.025 3.975 14 C -0.602 4.602 15 H 0.069 0.931 16 C -0.031 4.031 17 N -0.941 5.941 18 Si 1.110 2.890 19 H -0.281 1.281 20 H -0.262 1.262 21 H -0.294 1.294 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.061 0.939 38 H -0.008 1.008 39 H 0.018 0.982 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.796 1.086 3.050 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.187 4.187 4 C -0.178 4.178 5 C 0.036 3.964 6 N -0.353 5.353 7 C 0.390 3.610 8 O -0.448 6.448 9 O -0.262 6.262 10 C -0.019 4.019 11 C 0.043 3.957 12 C -0.186 4.186 13 C -0.013 4.013 14 C -0.640 4.640 15 H 0.087 0.913 16 C -0.230 4.230 17 N -0.579 5.579 18 Si 0.934 3.066 19 H -0.207 1.207 20 H -0.187 1.187 21 H -0.220 1.220 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.010 0.990 39 H 0.036 0.964 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.719 1.016 2.911 8.312 hybrid contribution 1.123 0.120 -0.754 1.358 sum 8.842 1.136 2.157 9.172 Atomic orbital electron populations 1.22313 0.95115 1.02373 1.00767 1.21027 0.95307 0.97072 0.95175 1.21738 1.01509 0.92818 1.02659 1.21891 1.01043 0.98223 0.96604 1.21517 1.00122 0.76167 0.98603 1.48280 1.37026 1.09797 1.40181 1.18539 0.81726 0.79999 0.80732 1.90948 1.32248 1.80766 1.40863 1.87141 1.50969 1.29735 1.58395 1.24621 0.89778 0.96979 0.90475 1.21891 0.88740 0.91547 0.93504 1.21906 1.01527 1.03376 0.91790 1.19715 0.90446 0.96307 0.94793 1.22349 0.94239 1.21640 1.25773 0.91314 1.27054 1.01677 0.95968 0.98288 1.70875 1.37613 1.24353 1.25024 0.82997 0.73440 0.74955 0.75253 1.20692 1.18659 1.22048 0.93272 0.93359 0.92842 0.91278 0.91962 0.91621 0.95771 0.93166 0.92091 0.88629 0.89631 0.85290 0.88101 0.89905 0.91562 0.92039 0.98981 0.96416 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 6.90 71.98 0.50 -4.77 16 2 C -0.08 -2.55 0.85 -52.18 -0.04 -2.59 16 3 C -0.13 -2.99 8.47 71.98 0.61 -2.38 16 4 C -0.12 -4.02 6.71 71.98 0.48 -3.53 16 5 C 0.16 4.64 4.70 86.38 0.41 5.05 16 6 N -0.61 -21.08 2.08 -904.50 -1.88 -22.96 16 7 C 0.64 24.89 7.22 129.91 0.94 25.83 16 8 O -0.56 -23.84 14.05 19.63 0.28 -23.57 16 9 O -0.35 -13.47 11.09 -47.24 -0.52 -13.99 16 10 C 0.06 1.87 7.11 72.35 0.51 2.38 16 11 C 0.13 4.49 0.83 3.86 0.00 4.49 16 12 C -0.13 -3.79 8.06 71.98 0.58 -3.21 16 13 C 0.02 1.08 1.63 29.85 0.05 1.13 16 14 C -0.60 -28.56 7.77 25.60 0.20 -28.36 16 15 H 0.07 3.03 6.51 -2.91 -0.02 3.01 16 16 C -0.03 -1.61 5.46 84.66 0.46 -1.15 16 17 N -0.94 -53.60 13.65 21.45 0.29 -53.31 16 18 Si 1.11 45.72 29.90 68.60 2.05 47.77 16 19 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 H 0.05 1.77 7.21 -2.38 -0.02 1.75 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 2.23 3.90 -2.39 -0.01 2.22 16 25 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.02 0.94 5.60 -2.39 -0.01 0.92 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 30 H 0.06 2.06 7.01 -2.39 -0.02 2.05 16 31 H 0.10 2.63 7.58 -2.39 -0.02 2.61 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.13 3.45 7.74 -2.39 -0.02 3.44 16 34 H 0.10 3.66 7.41 -2.39 -0.02 3.65 16 35 H 0.08 2.45 6.76 -2.39 -0.02 2.43 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.81 7.71 -2.39 -0.02 1.79 16 38 H -0.01 -0.38 6.10 -2.39 -0.01 -0.40 16 39 H 0.02 0.82 5.78 -2.39 -0.01 0.80 16 40 H 0.26 14.89 7.22 -92.70 -0.67 14.22 16 Total: -1.00 -60.72 301.35 6.03 -54.68 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.12 Total: 18.46 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.70 Total: -7.09 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -1.59 Total: -76.27 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.25 Total: -37.56 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.05 Total: 47.77 kcal Total: -60.72 6.03 -54.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.705 kcal (2) G-P(sol) polarization free energy of solvation -60.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds