Wall clock time and date at job start Mon Mar 30 2020 06:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52991 * 109.47361 * 239.99425 * 2 1 3 5 5 O 1.45203 * 109.47089 * 119.99178 * 2 1 3 6 6 C 1.34635 * 116.99531 * 60.00061 * 5 2 1 7 7 O 1.21517 * 120.00303 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00103 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49439 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11621 * 204.63969 * 9 8 6 11 11 C 1.53004 * 113.73988 * 221.94050 * 10 9 8 12 12 C 1.53007 * 109.46804 * 183.07286 * 11 10 9 13 13 C 1.50698 * 109.46730 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00271 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99937 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99745 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00236 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47006 * 60.00387 * 17 15 13 19 19 H 1.48499 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47308 * 300.00365 * 17 15 13 21 21 C 1.47925 * 134.49772 * 0.02562 * 8 6 5 22 22 H 1.08998 * 109.47383 * 300.00728 * 1 2 3 23 23 H 1.09005 * 109.47304 * 60.00233 * 1 2 3 24 24 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46800 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46363 * 299.99466 * 3 2 1 27 27 H 1.08998 * 109.47637 * 59.99427 * 3 2 1 28 28 H 1.09000 * 109.47231 * 300.00556 * 4 2 1 29 29 H 1.09005 * 109.47089 * 60.00206 * 4 2 1 30 30 H 1.09000 * 109.47212 * 179.97438 * 4 2 1 31 31 H 1.09003 * 113.77049 * 90.34034 * 9 8 6 32 32 H 1.08993 * 113.77081 * 318.93795 * 9 8 6 33 33 H 1.09002 * 113.74276 * 90.74001 * 10 9 8 34 34 H 1.08998 * 109.46823 * 303.07465 * 11 10 9 35 35 H 1.08998 * 109.46745 * 63.07477 * 11 10 9 36 36 H 1.08993 * 109.46981 * 300.00091 * 12 11 10 37 37 H 1.08997 * 109.47002 * 60.00092 * 12 11 10 38 38 H 0.97006 * 119.99857 * 179.97438 * 16 15 13 39 39 H 1.09006 * 113.87423 * 41.10256 * 21 8 6 40 40 H 1.08997 * 113.77410 * 269.60428 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6843 1.1857 6 6 1.6522 -1.9721 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 1.8732 -4.0477 2.8959 10 6 2.1488 -3.4876 4.3032 11 6 3.0481 -4.3834 5.1575 12 6 3.1948 -3.7754 6.5539 13 6 4.0800 -4.6580 7.3955 14 1 4.4966 -5.5620 6.9763 15 6 4.3589 -4.3110 8.7005 16 7 3.8520 -3.2100 9.2108 17 14 5.4567 -5.4047 9.7436 18 1 6.7942 -5.5139 9.1078 19 1 5.5990 -4.8147 11.0989 20 1 4.8491 -6.7552 9.8535 21 6 2.9027 -2.3468 3.5958 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6766 1.9565 0.8899 28 1 1.6766 -1.7490 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7209 -1.2493 31 1 2.6330 -4.7457 2.5443 32 1 0.8575 -4.4200 2.7625 33 1 1.2516 -3.1609 4.8290 34 1 2.6022 -5.3748 5.2378 35 1 4.0299 -4.4632 4.6909 36 1 3.6406 -2.7840 6.4734 37 1 2.2129 -3.6955 7.0204 38 1 4.0479 -2.9661 10.1290 39 1 2.7083 -1.3620 4.0208 40 1 3.9642 -2.5461 3.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:33 Heat of formation + Delta-G solvation = -65.127954 kcal Electronic energy + Delta-G solvation = -19062.359579 eV Core-core repulsion = 16071.057880 eV Total energy + Delta-G solvation = -2991.301699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.71939 -39.13429 -36.49564 -34.13049 -33.65576 -31.59233 -28.59219 -27.54082 -27.49510 -26.05978 -25.13884 -22.32680 -20.94009 -19.76556 -19.11622 -17.60693 -16.65688 -16.34850 -16.06412 -15.31904 -14.85045 -14.48531 -14.23263 -14.12810 -13.50256 -13.10004 -12.62988 -12.60212 -12.33544 -12.30605 -12.00671 -11.99059 -11.82812 -11.65833 -11.46123 -11.25950 -11.05852 -10.79710 -10.56383 -10.42456 -10.39853 -9.99025 -9.68258 -9.31363 -9.08444 -8.60968 -8.35982 -6.01469 -4.04094 2.09837 2.96571 3.32417 3.37269 3.39374 3.83270 4.44271 4.60242 4.64220 4.70550 4.78284 5.16865 5.28746 5.30912 5.32490 5.34760 5.39114 5.54274 5.55390 5.61697 5.71230 5.72825 5.79336 5.84137 5.93559 6.03164 6.16321 6.21371 6.31019 6.52665 6.56360 6.79528 7.05139 7.65028 7.77613 7.83403 7.98319 8.39977 8.43431 9.03025 9.60289 11.09616 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.044787 B = 0.003471 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.026309 B = 8064.439964 C = 8347.649575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.670 3.330 7 O -0.579 6.579 8 N -0.634 5.634 9 C 0.132 3.868 10 C -0.116 4.116 11 C -0.102 4.102 12 C 0.022 3.978 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.113 3.887 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 6.348 -17.336 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.097 3.903 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.426 3.574 7 O -0.470 6.470 8 N -0.376 5.376 9 C 0.011 3.989 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.015 4.015 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.009 4.009 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.445 6.485 -17.664 19.334 hybrid contribution 0.628 -0.448 0.545 0.944 sum -3.817 6.037 -17.119 18.549 Atomic orbital electron populations 1.22512 0.94141 1.05047 1.02294 1.22032 0.94335 0.91542 0.82359 1.21850 1.02258 0.92628 1.02993 1.22505 1.01499 1.03501 0.96439 1.86336 1.71337 1.23908 1.46050 1.17607 0.78996 0.80287 0.80464 1.90858 1.42476 1.70838 1.42795 1.49024 1.53242 1.14311 1.20972 1.23400 1.02205 0.82138 0.91116 1.23301 1.00376 0.96093 0.93701 1.21633 0.96876 0.97693 0.97802 1.19086 0.97073 0.96128 0.89220 1.21224 1.29904 1.08186 0.96807 0.92725 1.25017 0.96156 0.95205 0.98028 1.69951 1.44758 1.23714 1.15012 0.86675 0.81159 0.80808 0.79453 1.20257 1.21337 1.20264 1.23481 0.95707 1.00579 0.81105 0.92176 0.91351 0.89394 0.91494 0.90306 0.91425 0.89431 0.91328 0.92262 0.89517 0.90153 0.88157 0.92431 0.92722 0.96448 0.96508 0.92946 0.89875 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 2 C 0.13 1.58 1.13 -90.62 -0.10 1.48 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 4 C -0.18 -2.03 8.37 37.15 0.31 -1.72 16 5 O -0.36 -5.39 9.88 -40.31 -0.40 -5.79 16 6 C 0.67 10.96 8.22 54.06 0.44 11.41 16 7 O -0.58 -10.24 12.61 -19.29 -0.24 -10.49 16 8 N -0.63 -9.77 3.62 -183.87 -0.66 -10.44 16 9 C 0.13 1.83 8.40 -2.97 -0.02 1.80 16 10 C -0.12 -1.76 3.82 -89.69 -0.34 -2.11 16 11 C -0.10 -1.86 4.99 -26.73 -0.13 -1.99 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.11 1.67 8.45 -2.77 -0.02 1.64 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.25 7.92 -51.93 -0.41 0.84 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -30.91 327.95 -7.32 -38.23 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.89 Total: -2.27 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 0.22 Total: -4.80 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.07 Total: -35.98 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.64 Total: -16.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.91 -7.32 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.899 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds