Wall clock time and date at job start Mon Mar 30 2020 06:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52991 * 109.47361 * 239.99425 * 2 1 3 5 5 O 1.45203 * 109.47089 * 119.99178 * 2 1 3 6 6 C 1.34635 * 116.99531 * 60.00061 * 5 2 1 7 7 O 1.21517 * 120.00303 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00103 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49439 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11621 * 204.63969 * 9 8 6 11 11 C 1.53004 * 113.73988 * 221.94050 * 10 9 8 12 12 C 1.53007 * 109.46804 * 183.07286 * 11 10 9 13 13 C 1.50698 * 109.46730 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00271 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99937 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99745 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00236 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47006 * 60.00387 * 17 15 13 19 19 H 1.48499 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47308 * 300.00365 * 17 15 13 21 21 C 1.47925 * 134.49772 * 0.02562 * 8 6 5 22 22 H 1.08998 * 109.47383 * 300.00728 * 1 2 3 23 23 H 1.09005 * 109.47304 * 60.00233 * 1 2 3 24 24 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46800 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46363 * 299.99466 * 3 2 1 27 27 H 1.08998 * 109.47637 * 59.99427 * 3 2 1 28 28 H 1.09000 * 109.47231 * 300.00556 * 4 2 1 29 29 H 1.09005 * 109.47089 * 60.00206 * 4 2 1 30 30 H 1.09000 * 109.47212 * 179.97438 * 4 2 1 31 31 H 1.09003 * 113.77049 * 90.34034 * 9 8 6 32 32 H 1.08993 * 113.77081 * 318.93795 * 9 8 6 33 33 H 1.09002 * 113.74276 * 90.74001 * 10 9 8 34 34 H 1.08998 * 109.46823 * 303.07465 * 11 10 9 35 35 H 1.08998 * 109.46745 * 63.07477 * 11 10 9 36 36 H 1.08993 * 109.46981 * 300.00091 * 12 11 10 37 37 H 1.08997 * 109.47002 * 60.00092 * 12 11 10 38 38 H 0.97006 * 119.99857 * 179.97438 * 16 15 13 39 39 H 1.09006 * 113.87423 * 41.10256 * 21 8 6 40 40 H 1.08997 * 113.77410 * 269.60428 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6843 1.1857 6 6 1.6522 -1.9721 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 1.8732 -4.0477 2.8959 10 6 2.1488 -3.4876 4.3032 11 6 3.0481 -4.3834 5.1575 12 6 3.1948 -3.7754 6.5539 13 6 4.0800 -4.6580 7.3955 14 1 4.4966 -5.5620 6.9763 15 6 4.3589 -4.3110 8.7005 16 7 3.8520 -3.2100 9.2108 17 14 5.4567 -5.4047 9.7436 18 1 6.7942 -5.5139 9.1078 19 1 5.5990 -4.8147 11.0989 20 1 4.8491 -6.7552 9.8535 21 6 2.9027 -2.3468 3.5958 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6766 1.9565 0.8899 28 1 1.6766 -1.7490 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7209 -1.2493 31 1 2.6330 -4.7457 2.5443 32 1 0.8575 -4.4200 2.7625 33 1 1.2516 -3.1609 4.8290 34 1 2.6022 -5.3748 5.2378 35 1 4.0299 -4.4632 4.6909 36 1 3.6406 -2.7840 6.4734 37 1 2.2129 -3.6955 7.0204 38 1 4.0479 -2.9661 10.1290 39 1 2.7083 -1.3620 4.0208 40 1 3.9642 -2.5461 3.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:33 Heat of formation + Delta-G solvation = -82.952800 kcal Electronic energy + Delta-G solvation = -19063.132523 eV Core-core repulsion = 16071.057880 eV Total energy + Delta-G solvation = -2992.074643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87518 -40.30610 -37.66561 -35.66429 -35.02019 -33.34137 -30.12827 -28.37225 -28.30807 -27.23214 -26.90833 -23.80639 -22.35621 -21.07269 -20.24247 -18.79573 -18.32056 -17.73127 -17.34144 -16.54573 -16.38941 -15.88082 -15.37883 -15.21249 -14.78042 -14.49341 -14.10076 -13.60796 -13.44683 -13.42509 -13.32132 -13.08297 -12.91614 -12.87519 -12.79521 -12.55100 -12.46733 -12.30906 -12.14879 -11.97875 -11.45178 -11.40108 -11.20059 -11.09691 -10.85043 -10.47283 -9.82072 -8.13995 -6.23837 1.00275 1.44508 1.46349 1.54006 1.73783 2.45648 2.74047 3.19864 3.47653 3.74750 3.79371 3.93986 3.97645 4.05719 4.25619 4.48143 4.56119 4.60636 4.62197 4.64093 4.66331 4.75127 4.81111 4.85982 4.86414 4.96560 5.02419 5.10742 5.27044 5.32006 5.32567 5.38706 5.48263 5.61231 5.85792 5.94955 6.32328 6.61913 6.94772 7.23032 7.45271 8.97169 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.044787 B = 0.003471 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.026309 B = 8064.439964 C = 8347.649575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.135 4.135 4 C -0.177 4.177 5 O -0.371 6.371 6 C 0.665 3.335 7 O -0.597 6.597 8 N -0.639 5.639 9 C 0.139 3.861 10 C -0.110 4.110 11 C -0.086 4.086 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.115 3.885 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.064 0.936 36 H -0.003 1.003 37 H -0.009 1.009 38 H 0.262 0.738 39 H 0.081 0.919 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 6.195 -18.478 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.083 3.917 3 C -0.192 4.192 4 C -0.234 4.234 5 O -0.286 6.286 6 C 0.422 3.578 7 O -0.489 6.489 8 N -0.381 5.381 9 C 0.019 3.981 10 C -0.129 4.129 11 C -0.124 4.124 12 C -0.013 4.013 13 C -0.579 4.579 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.193 1.193 21 C -0.007 4.007 22 H 0.077 0.923 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.015 0.985 37 H 0.009 0.991 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.798 6.327 -18.818 20.214 hybrid contribution 0.397 -0.354 0.872 1.022 sum -3.401 5.974 -17.946 19.218 Atomic orbital electron populations 1.22465 0.93935 1.03561 1.03579 1.22493 0.94762 0.92839 0.81610 1.21884 1.02352 0.90618 1.04330 1.22450 1.01519 1.02119 0.97321 1.86345 1.71479 1.23201 1.47604 1.17755 0.78880 0.80768 0.80444 1.90851 1.43250 1.71362 1.43448 1.49108 1.53167 1.14932 1.20897 1.23436 1.03339 0.81904 0.89443 1.23091 0.99651 0.96121 0.94043 1.21386 0.98219 0.98012 0.94780 1.19004 0.94869 0.95195 0.92262 1.21746 1.29988 1.08700 0.97472 0.91978 1.25926 0.97702 0.96583 0.99613 1.70087 1.46360 1.25576 1.15389 0.85592 0.79482 0.79026 0.77496 1.19191 1.21295 1.19320 1.23507 0.96142 1.00285 0.80739 0.92340 0.88612 0.92150 0.91374 0.87483 0.91553 0.92157 0.88634 0.92131 0.87683 0.89386 0.88844 0.91768 0.91716 0.98479 0.99101 0.92975 0.90064 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.37 71.98 0.60 -3.23 16 2 C 0.12 2.65 1.13 -10.79 -0.01 2.64 16 3 C -0.13 -2.10 8.85 71.98 0.64 -1.46 16 4 C -0.18 -3.70 8.37 71.98 0.60 -3.10 16 5 O -0.37 -10.89 9.88 -55.45 -0.55 -11.43 16 6 C 0.66 21.52 8.22 129.79 1.07 22.59 16 7 O -0.60 -21.12 12.61 19.79 0.25 -20.87 16 8 N -0.64 -19.20 3.62 -966.05 -3.49 -22.69 16 9 C 0.14 3.64 8.40 86.49 0.73 4.36 16 10 C -0.11 -3.28 3.82 -10.13 -0.04 -3.31 16 11 C -0.09 -3.06 4.99 30.60 0.15 -2.91 16 12 C 0.02 1.16 4.97 29.85 0.15 1.31 16 13 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 17 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 C 0.12 3.31 8.45 86.42 0.73 4.04 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.06 1.66 5.88 -2.39 -0.01 1.64 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 2.40 8.10 -2.39 -0.02 2.38 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.18 7.88 -2.39 -0.02 2.16 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 39 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.10 2.65 7.92 -2.39 -0.02 2.64 16 Total: -1.00 -66.71 327.95 4.82 -61.88 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.99 Total: 11.04 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.31 Total: -7.80 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.21 Total: -78.07 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.30 Total: -32.30 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.71 4.82 -61.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.071 kcal (2) G-P(sol) polarization free energy of solvation -66.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds