Wall clock time and date at job start Mon Mar 30 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46893 * 2 1 4 4 C 1.52995 * 109.47429 * 240.00161 * 2 1 3 5 5 C 1.52999 * 109.46852 * 119.99569 * 2 1 3 6 6 N 1.46505 * 109.46836 * 60.00685 * 5 2 1 7 7 C 1.47093 * 125.56129 * 89.99755 * 6 5 2 8 8 C 1.54086 * 103.90691 * 180.02562 * 7 6 5 9 9 C 1.52998 * 110.52294 * 241.15554 * 8 7 6 10 10 C 1.53001 * 110.52136 * 118.55760 * 8 7 6 11 11 C 1.50701 * 109.47241 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99820 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00309 * 180.02562 * 11 10 8 14 14 N 1.31511 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00101 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47177 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47156 * 120.00039 * 15 13 11 18 18 H 1.48504 * 109.47107 * 239.99458 * 15 13 11 19 19 O 1.45708 * 104.00962 * 359.92488 * 8 7 6 20 20 C 1.33768 * 109.47602 * 359.97438 * 19 8 7 21 21 O 1.21507 * 123.07277 * 179.97438 * 20 19 8 22 22 H 1.09002 * 109.47847 * 300.00057 * 1 2 3 23 23 H 1.09005 * 109.46908 * 59.99891 * 1 2 3 24 24 H 1.09004 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46992 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47635 * 299.99933 * 3 2 1 27 27 H 1.09002 * 109.47009 * 59.99926 * 3 2 1 28 28 H 1.09004 * 109.47003 * 299.99966 * 4 2 1 29 29 H 1.09002 * 109.47488 * 59.99723 * 4 2 1 30 30 H 1.09002 * 109.47133 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47605 * 300.00414 * 5 2 1 32 32 H 1.09002 * 109.47048 * 180.02562 * 5 2 1 33 33 H 1.09002 * 110.56672 * 61.43019 * 7 6 5 34 34 H 1.08999 * 110.56403 * 298.72091 * 7 6 5 35 35 H 1.09000 * 109.47122 * 59.99687 * 9 8 7 36 36 H 1.09001 * 109.47318 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47102 * 300.00146 * 9 8 7 38 38 H 1.08999 * 109.46963 * 299.99845 * 10 8 7 39 39 H 1.09001 * 109.47283 * 60.00086 * 10 8 7 40 40 H 0.96998 * 120.00087 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 2.2436 -3.2544 0.6510 8 6 1.3017 -4.4404 0.9346 9 6 2.0046 -5.4887 1.7993 10 6 0.8166 -5.0652 -0.3751 11 6 -0.1019 -6.2205 -0.0706 12 1 -0.3177 -6.4831 0.9545 13 6 -0.6658 -6.9429 -1.1007 14 7 -0.4026 -6.6234 -2.3489 15 14 -1.8038 -8.3754 -0.7232 16 1 -1.9360 -8.5282 0.7480 17 1 -3.1401 -8.1156 -1.3165 18 1 -1.2395 -9.6215 -1.3012 19 8 0.1878 -3.8411 1.6579 20 6 0.4011 -2.5278 1.7968 21 8 -0.3764 -1.7861 2.3640 22 1 -0.3635 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6765 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7215 -1.2489 31 1 1.6765 -0.2074 2.1393 32 1 3.1299 -0.7208 1.2496 33 1 3.2103 -3.4112 1.1296 34 1 2.3677 -3.1112 -0.4224 35 1 2.3018 -5.0384 2.7465 36 1 1.3242 -6.3189 1.9889 37 1 2.8889 -5.8558 1.2783 38 1 0.2783 -4.3171 -0.9570 39 1 1.6734 -5.4225 -0.9464 40 1 -0.7990 -7.1319 -3.0736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260710410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:58 Heat of formation + Delta-G solvation = -91.145377 kcal Electronic energy + Delta-G solvation = -20462.082744 eV Core-core repulsion = 17469.652844 eV Total energy + Delta-G solvation = -2992.429899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.15252 -37.77140 -36.75108 -33.95780 -33.59201 -31.69553 -27.78802 -27.34911 -27.13491 -26.96822 -25.24550 -23.25295 -21.21914 -20.19133 -18.65200 -16.63229 -16.41906 -16.24374 -15.78145 -14.82104 -14.62872 -14.40885 -14.10058 -13.89213 -13.41705 -13.10394 -12.66974 -12.51998 -12.41080 -12.13526 -12.01202 -11.65996 -11.52365 -11.45607 -11.20892 -11.05838 -10.99826 -10.70893 -10.66364 -10.57826 -10.48275 -10.24220 -10.00070 -9.32156 -9.17059 -8.47943 -8.45397 -6.08778 -4.10035 2.97925 3.29641 3.32549 3.37980 3.43069 4.12239 4.41258 4.73089 4.77461 4.80659 4.98719 5.17472 5.26141 5.29605 5.45539 5.57411 5.64153 5.66066 5.70148 5.78031 5.86523 5.94659 5.95532 6.03024 6.12714 6.15411 6.24795 6.33378 6.46008 6.56647 6.59303 6.77946 6.84567 7.30827 7.43646 7.88141 8.03046 8.25426 8.59939 8.93206 9.54126 11.02728 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.006067 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.228692 B = 4613.678848 C = 4840.416264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.146 4.146 5 C 0.159 3.841 6 N -0.632 5.632 7 C 0.067 3.933 8 C 0.102 3.898 9 C -0.141 4.141 10 C 0.025 3.975 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.306 6.306 20 C 0.641 3.359 21 O -0.541 6.541 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.041 0.959 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 10.870 3.505 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.203 4.203 5 C 0.038 3.962 6 N -0.379 5.379 7 C -0.056 4.056 8 C 0.065 3.935 9 C -0.198 4.198 10 C -0.012 4.012 11 C -0.550 4.550 12 H 0.082 0.918 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.215 6.215 20 C 0.397 3.603 21 O -0.429 6.429 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.794 11.036 3.708 14.590 hybrid contribution -0.526 -0.765 -0.125 0.936 sum 8.268 10.271 3.583 13.664 Atomic orbital electron populations 1.21814 0.93612 1.02624 1.01200 1.21038 0.96988 0.95302 0.95764 1.21797 1.00630 0.95039 1.02011 1.21994 1.00337 1.01342 0.96599 1.21281 0.98212 0.78626 0.98124 1.48070 1.22151 1.08475 1.59229 1.23208 0.96754 0.85164 1.00476 1.23595 0.82608 0.91618 0.95645 1.21964 1.00740 0.99285 0.97797 1.19447 0.97532 0.96325 0.87857 1.21110 1.27567 1.13183 0.93139 0.91818 1.24977 0.96583 0.97756 0.94995 1.69949 1.44493 1.40579 0.98504 0.86492 0.80657 0.82029 0.78639 1.19563 1.20986 1.21039 1.87409 1.44665 1.18702 1.70773 1.18769 0.81367 0.82230 0.77963 1.90940 1.49244 1.54720 1.47957 0.92404 0.93210 0.92338 0.92692 0.92360 0.92561 0.91595 0.92682 0.92878 0.89958 0.90402 0.90251 0.89002 0.93663 0.89644 0.90768 0.95513 0.94086 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.43 37.16 0.28 -1.74 16 2 C -0.09 -1.10 0.84 -154.51 -0.13 -1.23 16 3 C -0.14 -1.30 8.47 37.16 0.31 -0.98 16 4 C -0.15 -1.78 7.89 37.15 0.29 -1.49 16 5 C 0.16 2.02 4.99 -4.04 -0.02 2.00 16 6 N -0.63 -10.21 2.37 -178.74 -0.42 -10.63 16 7 C 0.07 1.03 6.41 -3.15 -0.02 1.01 16 8 C 0.10 1.99 1.08 -90.05 -0.10 1.89 16 9 C -0.14 -2.39 8.55 37.16 0.32 -2.07 16 10 C 0.03 0.60 4.16 -27.88 -0.12 0.49 16 11 C -0.51 -13.77 8.21 -34.44 -0.28 -14.05 16 12 H 0.06 1.71 6.57 -52.49 -0.34 1.37 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 O -0.31 -6.90 10.31 -37.82 -0.39 -7.29 16 20 C 0.64 13.25 7.34 53.85 0.40 13.65 16 21 O -0.54 -12.35 16.51 -19.11 -0.32 -12.67 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.08 6.20 -51.93 -0.32 0.75 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.97 5.45 -51.93 -0.28 0.69 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.99 7.73 -51.93 -0.40 0.59 16 34 H 0.09 1.37 5.48 -51.93 -0.28 1.09 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.61 6.46 -51.93 -0.34 1.28 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -31.22 316.02 -6.41 -37.63 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.59 Total: -2.09 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 0.83 Total: -1.01 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.31 Total: -35.72 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.71 Total: -19.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.22 -6.41 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.519 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds