Wall clock time and date at job start Mon Mar 30 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46893 * 2 1 4 4 C 1.52995 * 109.47429 * 240.00161 * 2 1 3 5 5 C 1.52999 * 109.46852 * 119.99569 * 2 1 3 6 6 N 1.46505 * 109.46836 * 60.00685 * 5 2 1 7 7 C 1.47093 * 125.56129 * 89.99755 * 6 5 2 8 8 C 1.54086 * 103.90691 * 180.02562 * 7 6 5 9 9 C 1.52998 * 110.52294 * 241.15554 * 8 7 6 10 10 C 1.53001 * 110.52136 * 118.55760 * 8 7 6 11 11 C 1.50701 * 109.47241 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99820 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00309 * 180.02562 * 11 10 8 14 14 N 1.31511 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00101 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47177 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47156 * 120.00039 * 15 13 11 18 18 H 1.48504 * 109.47107 * 239.99458 * 15 13 11 19 19 O 1.45708 * 104.00962 * 359.92488 * 8 7 6 20 20 C 1.33768 * 109.47602 * 359.97438 * 19 8 7 21 21 O 1.21507 * 123.07277 * 179.97438 * 20 19 8 22 22 H 1.09002 * 109.47847 * 300.00057 * 1 2 3 23 23 H 1.09005 * 109.46908 * 59.99891 * 1 2 3 24 24 H 1.09004 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46992 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47635 * 299.99933 * 3 2 1 27 27 H 1.09002 * 109.47009 * 59.99926 * 3 2 1 28 28 H 1.09004 * 109.47003 * 299.99966 * 4 2 1 29 29 H 1.09002 * 109.47488 * 59.99723 * 4 2 1 30 30 H 1.09002 * 109.47133 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47605 * 300.00414 * 5 2 1 32 32 H 1.09002 * 109.47048 * 180.02562 * 5 2 1 33 33 H 1.09002 * 110.56672 * 61.43019 * 7 6 5 34 34 H 1.08999 * 110.56403 * 298.72091 * 7 6 5 35 35 H 1.09000 * 109.47122 * 59.99687 * 9 8 7 36 36 H 1.09001 * 109.47318 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47102 * 300.00146 * 9 8 7 38 38 H 1.08999 * 109.46963 * 299.99845 * 10 8 7 39 39 H 1.09001 * 109.47283 * 60.00086 * 10 8 7 40 40 H 0.96998 * 120.00087 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 2.2436 -3.2544 0.6510 8 6 1.3017 -4.4404 0.9346 9 6 2.0046 -5.4887 1.7993 10 6 0.8166 -5.0652 -0.3751 11 6 -0.1019 -6.2205 -0.0706 12 1 -0.3177 -6.4831 0.9545 13 6 -0.6658 -6.9429 -1.1007 14 7 -0.4026 -6.6234 -2.3489 15 14 -1.8038 -8.3754 -0.7232 16 1 -1.9360 -8.5282 0.7480 17 1 -3.1401 -8.1156 -1.3165 18 1 -1.2395 -9.6215 -1.3012 19 8 0.1878 -3.8411 1.6579 20 6 0.4011 -2.5278 1.7968 21 8 -0.3764 -1.7861 2.3640 22 1 -0.3635 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6765 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7215 -1.2489 31 1 1.6765 -0.2074 2.1393 32 1 3.1299 -0.7208 1.2496 33 1 3.2103 -3.4112 1.1296 34 1 2.3677 -3.1112 -0.4224 35 1 2.3018 -5.0384 2.7465 36 1 1.3242 -6.3189 1.9889 37 1 2.8889 -5.8558 1.2783 38 1 0.2783 -4.3171 -0.9570 39 1 1.6734 -5.4225 -0.9464 40 1 -0.7990 -7.1319 -3.0736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260710410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:57 Heat of formation + Delta-G solvation = -109.878257 kcal Electronic energy + Delta-G solvation = -20462.895062 eV Core-core repulsion = 17469.652844 eV Total energy + Delta-G solvation = -2993.242218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.64217 -39.00861 -38.27129 -35.57645 -35.22415 -33.48815 -29.34838 -28.66380 -28.27029 -27.94665 -26.62455 -25.09890 -22.76263 -21.65345 -19.76777 -18.46165 -17.99648 -17.76635 -17.29610 -16.47444 -16.15541 -15.67788 -15.35404 -15.22676 -14.82860 -14.51932 -14.19039 -13.95818 -13.70650 -13.44117 -13.28837 -13.01846 -12.85083 -12.74586 -12.58297 -12.52955 -12.51246 -12.26052 -12.15953 -12.08674 -11.68963 -11.58472 -11.56797 -11.12358 -11.04901 -10.59551 -9.75032 -8.21733 -6.28492 1.37814 1.40847 1.52360 1.62251 1.79093 2.40471 2.64219 3.14770 3.39133 3.68168 3.76859 3.95612 3.98653 4.01953 4.30698 4.46390 4.49174 4.60207 4.68395 4.71679 4.79881 4.84685 4.91444 4.97875 5.04169 5.04830 5.11011 5.17596 5.30397 5.33280 5.34434 5.42860 5.46528 5.47437 5.63287 5.77086 6.17281 6.53132 6.82293 7.07249 7.38955 8.90026 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.006067 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.228692 B = 4613.678848 C = 4840.416264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.143 4.143 5 C 0.151 3.849 6 N -0.616 5.616 7 C 0.075 3.925 8 C 0.096 3.904 9 C -0.135 4.135 10 C 0.033 3.967 11 C -0.523 4.523 12 H 0.058 0.942 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.954 3.046 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.272 1.272 19 O -0.343 6.343 20 C 0.633 3.367 21 O -0.576 6.576 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.014 0.986 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.100 0.900 38 H -0.011 1.011 39 H 0.040 0.960 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 11.564 3.953 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.187 4.187 4 C -0.200 4.200 5 C 0.031 3.969 6 N -0.362 5.362 7 C -0.047 4.047 8 C 0.060 3.940 9 C -0.192 4.192 10 C -0.004 4.004 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.197 1.197 19 O -0.253 6.253 20 C 0.388 3.612 21 O -0.466 6.466 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.007 0.993 39 H 0.058 0.942 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.320 11.738 4.149 16.826 hybrid contribution -1.330 -0.948 -0.299 1.661 sum 9.990 10.790 3.849 15.200 Atomic orbital electron populations 1.21782 0.96329 0.99641 1.01178 1.21044 0.94634 0.97448 0.95648 1.21739 1.02111 0.92463 1.02412 1.21971 1.02040 0.99369 0.96620 1.21691 1.00596 0.76478 0.98143 1.48158 1.20500 1.10048 1.57528 1.23273 0.97149 0.82840 1.01426 1.23616 0.82796 0.93824 0.93801 1.21940 1.00694 0.97688 0.98839 1.19259 0.96542 0.94636 0.90009 1.21462 1.27889 1.13960 0.92830 0.92421 1.25773 0.98139 1.00359 0.94932 1.70047 1.45747 1.41855 0.99287 0.85551 0.78515 0.79415 0.78526 1.19171 1.21217 1.19727 1.87346 1.46608 1.20109 1.71243 1.18956 0.82360 0.81554 0.78342 1.90890 1.50650 1.55226 1.49801 0.93267 0.92362 0.96700 0.90203 0.91989 0.92257 0.94652 0.92518 0.90031 0.90341 0.86054 0.85562 0.88452 0.91167 0.92252 0.88141 0.99263 0.94185 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 7.43 71.98 0.53 -3.45 16 2 C -0.09 -1.94 0.84 -52.18 -0.04 -1.99 16 3 C -0.13 -2.01 8.47 71.98 0.61 -1.40 16 4 C -0.14 -3.20 7.89 71.98 0.57 -2.63 16 5 C 0.15 3.41 4.99 86.38 0.43 3.85 16 6 N -0.62 -19.04 2.37 -950.78 -2.25 -21.29 16 7 C 0.08 2.15 6.41 86.63 0.56 2.70 16 8 C 0.10 3.70 1.08 -10.43 -0.01 3.69 16 9 C -0.13 -4.34 8.55 71.98 0.62 -3.72 16 10 C 0.03 1.59 4.16 29.85 0.12 1.71 16 11 C -0.52 -28.82 8.21 25.60 0.21 -28.61 16 12 H 0.06 3.18 6.57 -2.91 -0.02 3.16 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 15 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 O -0.34 -15.86 10.31 -47.28 -0.49 -16.35 16 20 C 0.63 26.56 7.34 129.86 0.95 27.51 16 21 O -0.58 -27.15 16.51 19.66 0.32 -26.82 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.01 0.55 6.20 -2.38 -0.01 0.53 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.03 1.01 5.45 -2.38 -0.01 0.99 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.89 7.94 -2.39 -0.02 1.87 16 32 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.13 2.50 7.73 -2.39 -0.02 2.48 16 34 H 0.10 2.73 5.48 -2.39 -0.01 2.71 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.22 6.46 -2.39 -0.02 2.20 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -71.53 316.02 5.91 -65.62 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.00 Total: 8.23 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.01 Total: -1.54 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.97 Total: -75.65 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.16 Total: -43.17 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.53 5.91 -65.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.261 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds