Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52991 * 109.47381 * 239.99997 * 2 1 3 5 5 O 1.45200 * 109.47051 * 119.99368 * 2 1 3 6 6 C 1.34639 * 116.99911 * 60.00446 * 5 2 1 7 7 O 1.21514 * 119.99836 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00136 * 179.97438 * 6 5 2 9 9 C 1.47812 * 134.58476 * 359.95127 * 8 6 5 10 10 C 1.53940 * 86.15926 * 204.57470 * 9 8 6 11 11 C 1.47583 * 134.49113 * 180.02562 * 8 6 5 12 12 H 1.09006 * 113.76760 * 269.77837 * 11 8 6 13 13 C 1.52992 * 113.77162 * 41.06504 * 11 8 6 14 14 C 1.52997 * 109.47482 * 273.65554 * 13 11 8 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 H 1.08996 * 109.47337 * 300.00689 * 1 2 3 24 24 H 1.09005 * 109.47063 * 60.00297 * 1 2 3 25 25 H 1.09002 * 109.46685 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46926 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47061 * 299.99704 * 3 2 1 28 28 H 1.08994 * 109.47353 * 59.99928 * 3 2 1 29 29 H 1.09002 * 109.47236 * 299.99692 * 4 2 1 30 30 H 1.08996 * 109.47517 * 59.99671 * 4 2 1 31 31 H 1.08998 * 109.47345 * 180.02562 * 4 2 1 32 32 H 1.08998 * 113.66477 * 90.26838 * 9 8 6 33 33 H 1.09001 * 113.93382 * 318.91967 * 9 8 6 34 34 H 1.09003 * 113.74392 * 222.13173 * 10 9 8 35 35 H 1.09006 * 113.73811 * 90.83242 * 10 9 8 36 36 H 1.09002 * 109.47103 * 153.65306 * 13 11 8 37 37 H 1.08998 * 109.46862 * 33.66119 * 13 11 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 40 40 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9510 -2.5094 0.5041 8 7 2.0681 -2.6655 2.4168 9 6 2.9030 -2.3495 3.5949 10 6 3.1933 -3.8596 3.6649 11 6 1.8734 -4.0478 2.8958 12 1 1.0030 -4.1709 3.5404 13 6 1.9497 -5.1007 1.7884 14 6 0.5728 -5.2607 1.1409 15 6 0.6482 -6.2974 0.0497 16 1 1.5845 -6.7928 -0.1607 17 6 -0.4784 -6.6141 -0.6794 18 7 -0.4126 -7.5191 -1.6313 19 14 -2.0980 -5.7576 -0.3150 20 1 -2.2077 -4.5318 -1.1461 21 1 -3.2239 -6.6726 -0.6316 22 1 -2.1499 -5.3876 1.1222 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7216 -1.2489 32 1 2.3350 -1.9714 4.4449 33 1 3.7797 -1.7436 3.3659 34 1 3.1733 -4.2639 4.6770 35 1 4.0760 -4.1633 3.1021 36 1 2.2641 -6.0536 2.2141 37 1 2.6709 -4.7839 1.0350 38 1 0.2585 -4.3078 0.7152 39 1 -0.1483 -5.5776 1.8944 40 1 -1.2051 -7.7416 -2.1445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260714321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -77.410876 kcal Electronic energy + Delta-G solvation = -20213.246494 eV Core-core repulsion = 17221.412167 eV Total energy + Delta-G solvation = -2991.834327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81362 -40.19591 -37.45088 -35.66830 -34.94766 -33.34917 -30.58402 -28.61767 -28.38846 -28.27725 -24.92945 -24.04102 -22.14199 -21.56715 -20.06511 -19.16676 -18.45582 -17.63236 -17.12354 -16.36947 -16.34034 -15.87265 -15.51618 -15.16955 -14.84787 -14.68143 -13.99809 -13.83486 -13.53042 -13.29646 -13.13145 -13.00328 -12.91408 -12.84159 -12.80822 -12.70617 -12.53961 -12.29236 -12.02632 -11.84595 -11.60412 -11.38691 -11.33810 -11.06276 -10.85767 -10.53567 -9.69277 -8.30739 -6.29548 1.08861 1.26659 1.31757 1.42200 1.92909 2.33982 2.86685 3.06368 3.54242 3.77142 3.79579 3.94770 4.07496 4.09861 4.28827 4.34732 4.49127 4.56151 4.58092 4.67354 4.73347 4.75679 4.80760 4.88050 4.89877 5.02195 5.06816 5.12903 5.18620 5.27978 5.35679 5.37479 5.45552 5.63462 5.67667 5.86998 6.28941 6.75013 6.82042 7.32873 7.47145 8.86735 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.007837 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.666351 B = 3571.729299 C = 4645.298630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.128 4.128 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.583 6.583 8 N -0.641 5.641 9 C 0.111 3.889 10 C -0.128 4.128 11 C 0.148 3.852 12 H 0.102 0.898 13 C -0.095 4.095 14 C -0.028 4.028 15 C -0.518 4.518 16 H 0.029 0.971 17 C 0.004 3.996 18 N -0.954 5.954 19 Si 0.950 3.050 20 H -0.281 1.281 21 H -0.277 1.277 22 H -0.253 1.253 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.008 0.992 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 19.236 12.175 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.185 4.185 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.407 3.593 7 O -0.473 6.473 8 N -0.385 5.385 9 C -0.010 4.010 10 C -0.166 4.166 11 C 0.047 3.953 12 H 0.119 0.881 13 C -0.133 4.133 14 C -0.066 4.066 15 C -0.556 4.556 16 H 0.047 0.953 17 C -0.191 4.191 18 N -0.596 5.596 19 Si 0.775 3.225 20 H -0.207 1.207 21 H -0.203 1.203 22 H -0.177 1.177 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.657 19.176 11.578 23.369 hybrid contribution -0.982 -0.340 -0.830 1.330 sum 5.675 18.836 10.749 22.417 Atomic orbital electron populations 1.22463 0.94641 1.03062 1.03552 1.22355 0.94205 0.93038 0.81491 1.21830 1.02415 0.89830 1.04393 1.22470 1.01542 1.01889 0.97966 1.86265 1.71999 1.22924 1.46934 1.18057 0.78393 0.80456 0.82371 1.90948 1.42015 1.70105 1.44221 1.49408 1.54037 1.14353 1.20748 1.23457 0.93955 0.97704 0.85839 1.23576 0.95525 0.95109 1.02365 1.23233 1.00239 0.78559 0.93233 0.88061 1.21458 0.97618 0.97925 0.96333 1.19827 0.95059 0.97004 0.94666 1.21530 0.95707 1.21122 1.17274 0.95302 1.25890 1.02957 0.95627 0.94650 1.70066 1.30778 1.34799 1.23964 0.85658 0.78985 0.78058 0.79791 1.20719 1.20294 1.17703 0.91406 0.89254 0.93277 0.91004 0.88085 0.90739 0.93343 0.89273 0.91867 0.87305 0.88755 0.85593 0.88917 0.90643 0.94643 0.93775 0.97417 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.10 8.37 71.98 0.60 -4.49 16 2 C 0.13 3.43 1.13 -10.79 -0.01 3.42 16 3 C -0.13 -2.24 8.85 71.98 0.64 -1.60 16 4 C -0.18 -5.45 8.37 71.98 0.60 -4.85 16 5 O -0.37 -11.62 9.88 -55.48 -0.55 -12.17 16 6 C 0.65 24.64 8.12 129.79 1.05 25.70 16 7 O -0.58 -27.32 9.13 19.80 0.18 -27.14 16 8 N -0.64 -20.18 3.50 -941.11 -3.30 -23.47 16 9 C 0.11 2.07 8.88 86.43 0.77 2.84 16 10 C -0.13 -2.37 7.86 31.24 0.25 -2.13 16 11 C 0.15 4.50 4.16 45.08 0.19 4.69 16 12 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 13 C -0.10 -3.98 4.77 30.59 0.15 -3.83 16 14 C -0.03 -1.50 3.93 29.85 0.12 -1.39 16 15 C -0.52 -32.99 9.66 25.60 0.25 -32.74 16 16 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 17 C 0.00 0.29 5.47 84.66 0.46 0.75 16 18 N -0.95 -64.32 13.96 21.45 0.30 -64.02 16 19 Si 0.95 50.52 27.47 68.60 1.88 52.40 16 20 H -0.28 -15.04 7.11 99.48 0.71 -14.34 16 21 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.25 -12.71 6.54 99.48 0.65 -12.06 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.05 1.84 5.88 -2.39 -0.01 1.83 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.94 5.88 -2.39 -0.01 1.93 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.79 8.10 -2.38 -0.02 1.77 16 36 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 2.50 4.31 -2.39 -0.01 2.49 16 39 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 40 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 Total: -1.00 -83.04 317.78 4.52 -78.51 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.94 Total: 9.52 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 5.06 Total: -13.64 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.00 Total: -87.49 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.37 Total: -39.30 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.88 Total: 52.40 kcal Total: -83.04 4.52 -78.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.103 kcal (2) G-P(sol) polarization free energy of solvation -83.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds