Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46728 * 2 1 4 4 C 1.52998 * 109.47530 * 240.00190 * 2 1 3 5 5 O 1.45199 * 109.47129 * 119.99660 * 2 1 3 6 6 C 1.34639 * 116.99921 * 60.00806 * 5 2 1 7 7 O 1.21512 * 119.99594 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99905 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99710 * 179.97438 * 8 6 5 10 10 H 1.08992 * 110.01807 * 329.07891 * 9 8 6 11 11 C 1.54269 * 110.03155 * 207.68235 * 9 8 6 12 12 C 1.55013 * 104.13558 * 217.07015 * 11 9 8 13 13 C 1.54880 * 102.75819 * 37.95280 * 12 11 9 14 14 C 1.53881 * 110.03041 * 90.47041 * 9 8 6 15 15 H 1.09000 * 110.02713 * 238.61655 * 14 9 8 16 16 C 1.50699 * 110.03278 * 0.04272 * 14 9 8 17 17 H 1.08005 * 119.99941 * 5.31205 * 16 14 9 18 18 C 1.37872 * 120.00077 * 185.30443 * 16 14 9 19 19 N 1.31522 * 119.99961 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00177 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46857 * 60.00243 * 20 18 16 22 22 H 1.48505 * 109.47064 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47268 * 300.00238 * 20 18 16 24 24 H 1.08995 * 109.47432 * 299.99917 * 1 2 3 25 25 H 1.09000 * 109.47167 * 60.00354 * 1 2 3 26 26 H 1.09006 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46976 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47865 * 299.99972 * 3 2 1 29 29 H 1.09004 * 109.47212 * 60.00469 * 3 2 1 30 30 H 1.09006 * 109.46725 * 300.00076 * 4 2 1 31 31 H 1.09000 * 109.47340 * 59.99562 * 4 2 1 32 32 H 1.08999 * 109.47107 * 179.97438 * 4 2 1 33 33 H 0.96998 * 120.00549 * 359.97438 * 8 6 5 34 34 H 1.08996 * 110.48625 * 335.74087 * 11 9 8 35 35 H 1.09000 * 110.48050 * 98.38198 * 11 9 8 36 36 H 1.09002 * 110.76465 * 279.63098 * 12 11 9 37 37 H 1.08998 * 110.90142 * 156.34176 * 12 11 9 38 38 H 1.08997 * 110.48981 * 203.36728 * 13 12 11 39 39 H 1.09001 * 110.59998 * 80.77878 * 13 12 11 40 40 H 0.96997 * 120.00137 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0673 -2.6653 2.4172 9 6 1.6733 -4.0665 2.5836 10 1 0.6945 -4.2347 2.1346 11 6 1.6369 -4.4308 4.0823 12 6 2.1652 -5.8873 4.1308 13 6 3.2803 -5.8826 3.0560 14 6 2.7181 -4.9889 1.9313 15 1 2.2462 -5.6047 1.1657 16 6 3.8249 -4.1664 1.3233 17 1 3.8414 -3.0956 1.4635 18 6 4.8164 -4.7809 0.5884 19 7 4.7961 -6.0848 0.4175 20 14 6.1888 -3.7615 -0.1646 21 1 6.9268 -3.0530 0.9117 22 1 7.1216 -4.6531 -0.8996 23 1 5.6093 -2.7681 -1.1041 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8901 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7207 -1.2494 33 1 2.6268 -2.2364 3.0834 34 1 2.2893 -3.7688 4.6517 35 1 0.6164 -4.3815 4.4621 36 1 1.3775 -6.5931 3.8671 37 1 2.5765 -6.1193 5.1132 38 1 3.4591 -6.8927 2.6872 39 1 4.1992 -5.4564 3.4585 40 1 5.4939 -6.5171 -0.0993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261223069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = -93.701116 kcal Electronic energy + Delta-G solvation = -20521.455322 eV Core-core repulsion = 17528.914598 eV Total energy + Delta-G solvation = -2992.540725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13318 -37.96045 -35.95316 -33.73831 -32.63606 -32.31616 -28.09483 -27.19879 -27.04057 -26.75589 -23.97374 -21.97154 -20.09020 -19.31213 -18.88191 -17.48565 -16.57900 -15.82823 -15.42165 -14.79344 -14.65096 -14.04524 -13.97439 -13.90075 -13.27748 -12.68888 -12.32877 -12.30712 -12.08848 -11.73145 -11.61308 -11.50211 -11.45872 -11.09590 -10.90021 -10.88416 -10.71757 -10.49913 -10.11553 -10.01244 -9.87194 -9.61483 -9.42180 -9.32276 -8.73004 -8.28951 -7.94906 -5.92842 -3.92258 2.88883 3.35405 3.39956 3.43251 3.72354 4.50677 4.85066 5.00726 5.03452 5.19965 5.33887 5.54242 5.62426 5.63056 5.71049 5.75951 5.86765 5.93202 5.99785 6.15718 6.21949 6.25778 6.30964 6.46122 6.53995 6.60000 6.69336 6.78105 6.84058 7.02495 7.14064 7.29014 7.35767 7.72828 7.90440 8.06927 8.31889 8.52953 9.09159 9.24191 9.70674 11.18023 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.009193 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.843291 B = 3045.057683 C = 4235.416953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.138 3.862 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.374 6.374 6 C 0.655 3.345 7 O -0.572 6.572 8 N -0.679 5.679 9 C 0.160 3.840 10 H 0.075 0.925 11 C -0.125 4.125 12 C -0.129 4.129 13 C -0.097 4.097 14 C 0.033 3.967 15 H 0.038 0.962 16 C -0.499 4.499 17 H 0.061 0.939 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.883 3.117 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.279 1.279 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.397 0.603 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 9.831 3.551 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.101 3.899 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.289 6.289 6 C 0.408 3.592 7 O -0.462 6.462 8 N -0.335 5.335 9 C 0.057 3.943 10 H 0.093 0.907 11 C -0.163 4.163 12 C -0.167 4.167 13 C -0.135 4.135 14 C 0.013 3.987 15 H 0.056 0.944 16 C -0.538 4.538 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.452 9.474 2.992 11.846 hybrid contribution 1.211 0.677 -0.334 1.427 sum -5.242 10.151 2.658 11.730 Atomic orbital electron populations 1.22499 0.94566 1.05080 1.01624 1.21873 0.93862 0.91195 0.83003 1.21834 1.02222 0.93137 1.02425 1.22505 1.01782 1.03955 0.95816 1.86250 1.72139 1.24823 1.45709 1.17911 0.79035 0.79641 0.82593 1.90821 1.42318 1.70187 1.42839 1.44676 1.53946 1.12259 1.22601 1.21861 0.99386 0.78547 0.94555 0.90689 1.22604 0.99910 0.97874 0.95890 1.22578 0.99631 0.94957 0.99561 1.22359 0.95828 1.00670 0.94672 1.19630 0.92939 0.92668 0.93438 0.94427 1.21158 1.07381 0.93839 1.31430 0.92063 1.24956 0.97989 0.94745 0.96275 1.69963 1.33934 1.08334 1.40882 0.86805 0.82294 0.80249 0.79514 1.20452 1.21501 1.20446 0.92677 0.91764 0.89166 0.91633 0.90657 0.91866 0.88716 0.91992 0.92239 0.76962 0.91665 0.92578 0.92488 0.92918 0.92563 0.92827 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.37 37.16 0.31 -2.29 16 2 C 0.14 2.19 1.13 -90.62 -0.10 2.09 16 3 C -0.14 -1.69 8.85 37.16 0.33 -1.36 16 4 C -0.18 -3.14 8.37 37.16 0.31 -2.83 16 5 O -0.37 -7.01 9.94 -40.32 -0.40 -7.41 16 6 C 0.66 13.71 6.92 54.05 0.37 14.09 16 7 O -0.57 -13.23 11.49 -19.28 -0.22 -13.45 16 8 N -0.68 -13.39 3.22 -57.63 -0.19 -13.57 16 9 C 0.16 3.24 3.27 -66.81 -0.22 3.02 16 10 H 0.07 1.59 7.48 -51.93 -0.39 1.20 16 11 C -0.12 -2.06 6.54 -25.00 -0.16 -2.22 16 12 C -0.13 -2.25 6.91 -24.68 -0.17 -2.42 16 13 C -0.10 -2.16 5.73 -25.08 -0.14 -2.30 16 14 C 0.03 0.80 2.72 -90.65 -0.25 0.55 16 15 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.50 -13.48 7.67 -34.44 -0.26 -13.74 16 17 H 0.06 1.63 5.46 -52.48 -0.29 1.35 16 18 C 0.06 1.72 5.36 -17.82 -0.10 1.63 16 19 N -0.89 -26.04 12.83 55.43 0.71 -25.33 16 20 Si 0.88 21.95 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.55 5.88 -51.93 -0.31 1.24 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.94 5.88 -51.93 -0.31 1.64 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 6.98 8.49 -40.82 -0.35 6.64 16 34 H 0.06 1.01 7.76 -51.93 -0.40 0.60 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -30.48 315.00 -7.10 -37.58 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.65 Total: 6.29 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.08 Total: -5.78 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.53 Total: -38.90 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.62 Total: -20.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.48 -7.10 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261223069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.118 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds