Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46728 * 2 1 4 4 C 1.52998 * 109.47530 * 240.00190 * 2 1 3 5 5 O 1.45199 * 109.47129 * 119.99660 * 2 1 3 6 6 C 1.34639 * 116.99921 * 60.00806 * 5 2 1 7 7 O 1.21512 * 119.99594 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99905 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99710 * 179.97438 * 8 6 5 10 10 H 1.08992 * 110.01807 * 329.07891 * 9 8 6 11 11 C 1.54269 * 110.03155 * 207.68235 * 9 8 6 12 12 C 1.55013 * 104.13558 * 217.07015 * 11 9 8 13 13 C 1.54880 * 102.75819 * 37.95280 * 12 11 9 14 14 C 1.53881 * 110.03041 * 90.47041 * 9 8 6 15 15 H 1.09000 * 110.02713 * 238.61655 * 14 9 8 16 16 C 1.50699 * 110.03278 * 0.04272 * 14 9 8 17 17 H 1.08005 * 119.99941 * 5.31205 * 16 14 9 18 18 C 1.37872 * 120.00077 * 185.30443 * 16 14 9 19 19 N 1.31522 * 119.99961 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00177 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46857 * 60.00243 * 20 18 16 22 22 H 1.48505 * 109.47064 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47268 * 300.00238 * 20 18 16 24 24 H 1.08995 * 109.47432 * 299.99917 * 1 2 3 25 25 H 1.09000 * 109.47167 * 60.00354 * 1 2 3 26 26 H 1.09006 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46976 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47865 * 299.99972 * 3 2 1 29 29 H 1.09004 * 109.47212 * 60.00469 * 3 2 1 30 30 H 1.09006 * 109.46725 * 300.00076 * 4 2 1 31 31 H 1.09000 * 109.47340 * 59.99562 * 4 2 1 32 32 H 1.08999 * 109.47107 * 179.97438 * 4 2 1 33 33 H 0.96998 * 120.00549 * 359.97438 * 8 6 5 34 34 H 1.08996 * 110.48625 * 335.74087 * 11 9 8 35 35 H 1.09000 * 110.48050 * 98.38198 * 11 9 8 36 36 H 1.09002 * 110.76465 * 279.63098 * 12 11 9 37 37 H 1.08998 * 110.90142 * 156.34176 * 12 11 9 38 38 H 1.08997 * 110.48981 * 203.36728 * 13 12 11 39 39 H 1.09001 * 110.59998 * 80.77878 * 13 12 11 40 40 H 0.96997 * 120.00137 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0673 -2.6653 2.4172 9 6 1.6733 -4.0665 2.5836 10 1 0.6945 -4.2347 2.1346 11 6 1.6369 -4.4308 4.0823 12 6 2.1652 -5.8873 4.1308 13 6 3.2803 -5.8826 3.0560 14 6 2.7181 -4.9889 1.9313 15 1 2.2462 -5.6047 1.1657 16 6 3.8249 -4.1664 1.3233 17 1 3.8414 -3.0956 1.4635 18 6 4.8164 -4.7809 0.5884 19 7 4.7961 -6.0848 0.4175 20 14 6.1888 -3.7615 -0.1646 21 1 6.9268 -3.0530 0.9117 22 1 7.1216 -4.6531 -0.8996 23 1 5.6093 -2.7681 -1.1041 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8901 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7207 -1.2494 33 1 2.6268 -2.2364 3.0834 34 1 2.2893 -3.7688 4.6517 35 1 0.6164 -4.3815 4.4621 36 1 1.3775 -6.5931 3.8671 37 1 2.5765 -6.1193 5.1132 38 1 3.4591 -6.8927 2.6872 39 1 4.1992 -5.4564 3.4585 40 1 5.4939 -6.5171 -0.0993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261223069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = -112.463622 kcal Electronic energy + Delta-G solvation = -20522.268926 eV Core-core repulsion = 17528.914598 eV Total energy + Delta-G solvation = -2993.354328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.67081 -39.54807 -37.51334 -35.21835 -34.53281 -34.00153 -29.96052 -28.38140 -28.32478 -28.23520 -25.96183 -23.47759 -21.63737 -20.74986 -20.71384 -19.01501 -18.46925 -17.35468 -17.05617 -16.58191 -16.28464 -15.79353 -15.47260 -15.22163 -14.62215 -14.29912 -14.13515 -13.63234 -13.41253 -13.28295 -13.00507 -12.86759 -12.82438 -12.78679 -12.64590 -12.34705 -12.32135 -12.14691 -11.67790 -11.57401 -11.41561 -11.36208 -11.25652 -10.91535 -10.75379 -10.43586 -9.64809 -8.09323 -6.13118 1.34031 1.36029 1.41402 1.43794 2.09867 2.42132 3.23202 3.43234 3.82935 3.85768 3.98032 4.00735 4.12138 4.28501 4.56072 4.63935 4.67899 4.78745 4.83015 4.87192 4.90178 4.92003 4.96364 5.04662 5.08402 5.13334 5.25528 5.28883 5.34701 5.41714 5.52835 5.65054 5.70170 5.76667 5.97030 5.99260 6.43506 6.74167 6.96794 7.51926 7.66031 9.01215 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.009193 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.843291 B = 3045.057683 C = 4235.416953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.376 6.376 6 C 0.649 3.351 7 O -0.601 6.601 8 N -0.675 5.675 9 C 0.164 3.836 10 H 0.061 0.939 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.090 4.090 14 C 0.024 3.976 15 H -0.013 1.013 16 C -0.501 4.501 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.282 1.282 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.408 0.592 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.040 0.960 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 12.232 4.976 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.086 3.914 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.291 6.291 6 C 0.403 3.597 7 O -0.492 6.492 8 N -0.331 5.331 9 C 0.060 3.940 10 H 0.079 0.921 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.128 4.128 14 C 0.004 3.996 15 H 0.005 0.995 16 C -0.540 4.540 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.764 3.236 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.208 1.208 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.244 0.756 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.834 11.906 4.440 14.428 hybrid contribution 1.294 -0.055 -0.869 1.559 sum -5.540 11.851 3.571 13.561 Atomic orbital electron populations 1.22421 0.93380 1.03533 1.03741 1.22371 0.95055 0.92684 0.81248 1.21861 1.01982 0.90374 1.04640 1.22469 1.00686 1.02262 0.98416 1.86264 1.72123 1.23569 1.47121 1.18148 0.78798 0.80370 0.82410 1.90820 1.43531 1.71033 1.43820 1.44637 1.53939 1.11934 1.22613 1.21694 0.96994 0.78122 0.97157 0.92056 1.22559 1.02390 0.97149 0.92684 1.22511 0.97857 0.96047 0.99052 1.22118 0.97083 0.98118 0.95520 1.19624 0.93371 0.93207 0.93371 0.99508 1.21524 1.07578 0.94134 1.30743 0.91872 1.25690 1.00418 0.95688 0.97255 1.70100 1.34695 1.09708 1.42007 0.85929 0.79916 0.78806 0.78944 1.18959 1.21347 1.20845 0.91264 0.88911 0.92469 0.92063 0.87670 0.90414 0.92822 0.88654 0.93770 0.75613 0.89754 0.89259 0.91652 0.89835 0.95484 0.94139 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 8.37 71.98 0.60 -4.09 16 2 C 0.12 3.71 1.13 -10.80 -0.01 3.69 16 3 C -0.13 -2.77 8.85 71.98 0.64 -2.13 16 4 C -0.18 -6.13 8.37 71.98 0.60 -5.53 16 5 O -0.38 -13.79 9.94 -55.49 -0.55 -14.34 16 6 C 0.65 27.31 6.92 129.79 0.90 28.21 16 7 O -0.60 -28.68 11.49 19.80 0.23 -28.45 16 8 N -0.67 -26.22 3.22 -566.65 -1.82 -28.05 16 9 C 0.16 6.63 3.27 45.72 0.15 6.78 16 10 H 0.06 2.64 7.48 -2.39 -0.02 2.62 16 11 C -0.11 -3.30 6.54 31.71 0.21 -3.09 16 12 C -0.12 -3.79 6.91 31.93 0.22 -3.57 16 13 C -0.09 -4.05 5.73 31.67 0.18 -3.87 16 14 C 0.02 1.21 2.72 -10.81 -0.03 1.18 16 15 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 16 C -0.50 -27.70 7.67 25.60 0.20 -27.50 16 17 H 0.06 3.40 5.46 -2.91 -0.02 3.39 16 18 C 0.01 0.40 5.36 84.65 0.45 0.85 16 19 N -0.92 -56.07 12.83 21.45 0.28 -55.80 16 20 Si 0.94 45.81 29.54 68.60 2.03 47.84 16 21 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.96 5.88 -2.38 -0.01 1.94 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.05 2.27 5.88 -2.38 -0.01 2.26 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 13.74 8.49 -92.71 -0.79 12.95 16 34 H 0.08 2.26 7.76 -2.39 -0.02 2.24 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.89 7.85 -2.39 -0.02 1.87 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -70.04 315.00 4.49 -65.54 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.23 Total: 22.34 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.11 Total: -9.09 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.55 Total: -83.84 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.32 Total: -42.79 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.04 4.49 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261223069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.919 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds