Wall clock time and date at job start Mon Mar 30 2020 06:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47094 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99794 * 2 1 3 5 5 O 1.45203 * 109.47271 * 120.00247 * 2 1 3 6 6 C 1.34634 * 117.00264 * 59.99699 * 5 2 1 7 7 O 1.21513 * 120.00034 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99962 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99716 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.01870 * 33.60327 * 9 8 6 11 11 C 1.54270 * 110.06929 * 272.18997 * 9 8 6 12 12 C 1.54894 * 104.19418 * 264.29991 * 11 9 8 13 13 C 1.54961 * 102.77861 * 322.08881 * 12 11 9 14 14 C 1.53874 * 110.03200 * 154.99805 * 9 8 6 15 15 H 1.08997 * 110.03162 * 0.02562 * 14 9 8 16 16 C 1.50697 * 110.03227 * 238.61297 * 14 9 8 17 17 H 1.07996 * 120.00091 * 327.30520 * 16 14 9 18 18 C 1.37875 * 119.99668 * 147.29657 * 16 14 9 19 19 N 1.31516 * 119.99966 * 177.57876 * 18 16 14 20 20 Si 1.86797 * 120.00154 * 357.58509 * 18 16 14 21 21 H 1.48502 * 109.47188 * 274.90907 * 20 18 16 22 22 H 1.48502 * 109.47363 * 34.91545 * 20 18 16 23 23 H 1.48506 * 109.47212 * 154.91324 * 20 18 16 24 24 H 1.09004 * 109.46944 * 300.00148 * 1 2 3 25 25 H 1.09000 * 109.47209 * 59.99736 * 1 2 3 26 26 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46867 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46971 * 299.99784 * 3 2 1 29 29 H 1.08996 * 109.47140 * 60.00274 * 3 2 1 30 30 H 1.08998 * 109.47200 * 300.00384 * 4 2 1 31 31 H 1.09000 * 109.46754 * 60.00192 * 4 2 1 32 32 H 1.08996 * 109.47497 * 179.97438 * 4 2 1 33 33 H 0.96998 * 120.00207 * 359.97438 * 8 6 5 34 34 H 1.08993 * 110.48815 * 22.98020 * 11 9 8 35 35 H 1.09003 * 110.48229 * 145.62801 * 11 9 8 36 36 H 1.09002 * 110.74964 * 80.37737 * 12 11 9 37 37 H 1.08993 * 110.75820 * 203.55578 * 12 11 9 38 38 H 1.09002 * 110.47573 * 279.22819 * 13 12 11 39 39 H 1.09002 * 110.52865 * 156.56584 * 13 12 11 40 40 H 0.96998 * 120.00412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5098 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.6741 -4.0669 2.5831 10 1 1.6015 -4.5518 1.6097 11 6 0.3209 -4.1535 3.3188 12 6 0.7085 -4.3692 4.8028 13 6 1.9365 -5.3092 4.7032 14 6 2.7006 -4.8017 3.4629 15 1 3.4911 -4.1155 3.7667 16 6 3.2890 -5.9653 2.7073 17 1 2.6869 -6.5036 1.9904 18 6 4.5962 -6.3424 2.9312 19 7 5.0952 -7.3870 2.3073 20 14 5.6582 -5.3697 4.1209 21 1 6.2646 -4.2143 3.4120 22 1 4.8203 -4.8775 5.2437 23 1 6.7342 -6.2443 4.6526 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 2.6269 -2.2366 3.0833 34 1 -0.2373 -3.2247 3.2014 35 1 -0.2605 -4.9984 2.9497 36 1 0.9832 -3.4242 5.2715 37 1 -0.1046 -4.8475 5.3489 38 1 1.6161 -6.3409 4.5582 39 1 2.5570 -5.2232 5.5952 40 1 6.0147 -7.6526 2.4650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261223073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:23 Heat of formation + Delta-G solvation = -102.708747 kcal Electronic energy + Delta-G solvation = -20021.078152 eV Core-core repulsion = 17028.146827 eV Total energy + Delta-G solvation = -2992.931325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43203 -38.19779 -36.29344 -34.03468 -32.90698 -32.35827 -28.91927 -27.39530 -27.29828 -27.07404 -23.93057 -22.16568 -20.21626 -19.47186 -19.12352 -17.75540 -17.05452 -16.23409 -15.80023 -15.11625 -14.75990 -14.33834 -14.16088 -13.74515 -13.56367 -13.11208 -12.58504 -12.49805 -12.25071 -12.21353 -11.83615 -11.77714 -11.54890 -11.23986 -11.14858 -11.11387 -10.76067 -10.65384 -10.23436 -10.16710 -9.97380 -9.85685 -9.70268 -9.66657 -9.10475 -8.63891 -8.45021 -6.11223 -4.10599 2.59467 3.24674 3.29954 3.32609 3.33731 4.37317 4.56621 4.77797 4.81011 4.96300 5.12099 5.40188 5.45003 5.54019 5.54870 5.60968 5.68386 5.70175 5.78672 5.92215 5.98281 6.22616 6.26532 6.32078 6.33313 6.37897 6.39805 6.46193 6.56514 6.61890 6.78394 6.86546 7.09493 7.19954 7.34416 7.70795 7.98350 8.47262 8.86598 8.93203 9.50164 11.01858 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.006229 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.114788 B = 4493.894159 C = 5013.486549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.372 6.372 6 C 0.645 3.355 7 O -0.572 6.572 8 N -0.695 5.695 9 C 0.163 3.837 10 H 0.096 0.904 11 C -0.130 4.130 12 C -0.128 4.128 13 C -0.121 4.121 14 C 0.010 3.990 15 H 0.038 0.962 16 C -0.509 4.509 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.264 1.264 23 H -0.289 1.289 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 15.068 -0.376 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.287 6.287 6 C 0.398 3.602 7 O -0.462 6.462 8 N -0.352 5.352 9 C 0.060 3.940 10 H 0.114 0.886 11 C -0.169 4.169 12 C -0.165 4.165 13 C -0.159 4.159 14 C -0.010 4.010 15 H 0.056 0.944 16 C -0.547 4.547 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.189 1.189 23 H -0.215 1.215 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.232 0.768 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.145 14.726 -0.875 16.391 hybrid contribution 0.974 0.662 0.835 1.444 sum -6.171 15.388 -0.040 16.579 Atomic orbital electron populations 1.22504 0.94302 1.05160 1.01940 1.21954 0.94153 0.91344 0.82661 1.21843 1.02210 0.92912 1.02705 1.22516 1.01619 1.03793 0.96173 1.86287 1.71959 1.24459 1.46012 1.18205 0.79168 0.80062 0.82727 1.90855 1.41714 1.70168 1.43482 1.45252 1.54266 1.13104 1.22538 1.22112 0.93786 0.76677 1.01376 0.88631 1.22749 0.97332 1.00969 0.95853 1.22561 0.98612 0.99412 0.95958 1.22747 0.95200 0.99323 0.98636 1.20008 0.93219 0.95547 0.92198 0.94396 1.20968 0.97370 1.12884 1.23438 0.90511 1.25054 0.97717 0.94790 0.95448 1.69891 1.15390 1.25541 1.42698 0.86895 0.80421 0.80289 0.82101 1.20238 1.18904 1.21517 0.92472 0.91536 0.89175 0.91569 0.90463 0.91705 0.89047 0.91570 0.92213 0.76778 0.92622 0.91040 0.92740 0.92685 0.91137 0.93242 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.37 37.16 0.31 -1.96 16 2 C 0.14 1.81 1.13 -90.62 -0.10 1.70 16 3 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16 4 C -0.18 -2.48 8.37 37.16 0.31 -2.17 16 5 O -0.37 -6.02 9.94 -40.31 -0.40 -6.42 16 6 C 0.65 11.92 8.05 54.05 0.44 12.35 16 7 O -0.57 -11.61 11.54 -19.28 -0.22 -11.84 16 8 N -0.69 -12.67 5.04 -57.63 -0.29 -12.96 16 9 C 0.16 3.27 2.89 -66.81 -0.19 3.08 16 10 H 0.10 2.20 7.02 -51.93 -0.36 1.84 16 11 C -0.13 -2.27 6.54 -25.07 -0.16 -2.43 16 12 C -0.13 -2.09 6.91 -24.70 -0.17 -2.26 16 13 C -0.12 -2.38 6.36 -25.03 -0.16 -2.54 16 14 C 0.01 0.22 2.21 -90.65 -0.20 0.02 16 15 H 0.04 0.84 4.98 -51.93 -0.26 0.58 16 16 C -0.51 -13.76 8.55 -34.44 -0.29 -14.05 16 17 H 0.08 2.28 7.95 -52.49 -0.42 1.86 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 20 Si 0.88 20.91 26.94 -169.99 -4.58 16.33 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.26 -5.92 6.60 56.52 0.37 -5.55 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 6.51 8.43 -40.82 -0.34 6.17 16 34 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.45 7.85 -51.93 -0.41 1.04 16 39 H 0.05 0.95 7.83 -51.93 -0.41 0.55 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -30.10 315.52 -6.58 -36.67 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.62 Total: 7.07 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 0.01 Total: -7.40 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.48 Total: -39.17 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.62 Total: -18.26 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.58 Total: 16.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.10 -6.58 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261223073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.036 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds