Wall clock time and date at job start Mon Mar 30 2020 06:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47094 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99794 * 2 1 3 5 5 O 1.45203 * 109.47271 * 120.00247 * 2 1 3 6 6 C 1.34634 * 117.00264 * 59.99699 * 5 2 1 7 7 O 1.21513 * 120.00034 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99962 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99716 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.01870 * 33.60327 * 9 8 6 11 11 C 1.54270 * 110.06929 * 272.18997 * 9 8 6 12 12 C 1.54894 * 104.19418 * 264.29991 * 11 9 8 13 13 C 1.54961 * 102.77861 * 322.08881 * 12 11 9 14 14 C 1.53874 * 110.03200 * 154.99805 * 9 8 6 15 15 H 1.08997 * 110.03162 * 0.02562 * 14 9 8 16 16 C 1.50697 * 110.03227 * 238.61297 * 14 9 8 17 17 H 1.07996 * 120.00091 * 327.30520 * 16 14 9 18 18 C 1.37875 * 119.99668 * 147.29657 * 16 14 9 19 19 N 1.31516 * 119.99966 * 177.57876 * 18 16 14 20 20 Si 1.86797 * 120.00154 * 357.58509 * 18 16 14 21 21 H 1.48502 * 109.47188 * 274.90907 * 20 18 16 22 22 H 1.48502 * 109.47363 * 34.91545 * 20 18 16 23 23 H 1.48506 * 109.47212 * 154.91324 * 20 18 16 24 24 H 1.09004 * 109.46944 * 300.00148 * 1 2 3 25 25 H 1.09000 * 109.47209 * 59.99736 * 1 2 3 26 26 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46867 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46971 * 299.99784 * 3 2 1 29 29 H 1.08996 * 109.47140 * 60.00274 * 3 2 1 30 30 H 1.08998 * 109.47200 * 300.00384 * 4 2 1 31 31 H 1.09000 * 109.46754 * 60.00192 * 4 2 1 32 32 H 1.08996 * 109.47497 * 179.97438 * 4 2 1 33 33 H 0.96998 * 120.00207 * 359.97438 * 8 6 5 34 34 H 1.08993 * 110.48815 * 22.98020 * 11 9 8 35 35 H 1.09003 * 110.48229 * 145.62801 * 11 9 8 36 36 H 1.09002 * 110.74964 * 80.37737 * 12 11 9 37 37 H 1.08993 * 110.75820 * 203.55578 * 12 11 9 38 38 H 1.09002 * 110.47573 * 279.22819 * 13 12 11 39 39 H 1.09002 * 110.52865 * 156.56584 * 13 12 11 40 40 H 0.96998 * 120.00412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5098 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.6741 -4.0669 2.5831 10 1 1.6015 -4.5518 1.6097 11 6 0.3209 -4.1535 3.3188 12 6 0.7085 -4.3692 4.8028 13 6 1.9365 -5.3092 4.7032 14 6 2.7006 -4.8017 3.4629 15 1 3.4911 -4.1155 3.7667 16 6 3.2890 -5.9653 2.7073 17 1 2.6869 -6.5036 1.9904 18 6 4.5962 -6.3424 2.9312 19 7 5.0952 -7.3870 2.3073 20 14 5.6582 -5.3697 4.1209 21 1 6.2646 -4.2143 3.4120 22 1 4.8203 -4.8775 5.2437 23 1 6.7342 -6.2443 4.6526 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 2.6269 -2.2366 3.0833 34 1 -0.2373 -3.2247 3.2014 35 1 -0.2605 -4.9984 2.9497 36 1 0.9832 -3.4242 5.2715 37 1 -0.1046 -4.8475 5.3489 38 1 1.6161 -6.3409 4.5582 39 1 2.5570 -5.2232 5.5952 40 1 6.0147 -7.6526 2.4650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261223073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:22 Heat of formation + Delta-G solvation = -122.635289 kcal Electronic energy + Delta-G solvation = -20021.942231 eV Core-core repulsion = 17028.146827 eV Total energy + Delta-G solvation = -2993.795404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78983 -39.68012 -37.68775 -35.34153 -34.67530 -34.01354 -30.72464 -28.60229 -28.33654 -28.25257 -25.81340 -23.55059 -21.62146 -20.95362 -20.62359 -19.41980 -18.80569 -17.55737 -17.14984 -16.70504 -16.39804 -15.59331 -15.51571 -15.16239 -14.94011 -14.64096 -14.34208 -13.94284 -13.31940 -13.23649 -13.01119 -12.88705 -12.84560 -12.82686 -12.60034 -12.41764 -12.21165 -12.17595 -11.87866 -11.66337 -11.50108 -11.43558 -11.34386 -11.14733 -10.95003 -10.71539 -10.01725 -8.27906 -6.31999 1.27570 1.36026 1.37121 1.47900 1.85406 2.35529 3.06650 3.27905 3.79744 3.83324 3.85689 3.98430 3.99128 4.19490 4.53966 4.63773 4.66221 4.69117 4.71121 4.78612 4.82320 4.86226 4.90667 4.91613 4.97043 5.01436 5.14363 5.21851 5.25959 5.31938 5.38193 5.48917 5.52364 5.64260 5.67646 5.77689 6.32283 6.54618 6.73429 7.31903 7.45520 8.89193 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.006229 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.114788 B = 4493.894159 C = 5013.486549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.121 3.879 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.371 6.371 6 C 0.644 3.356 7 O -0.596 6.596 8 N -0.692 5.692 9 C 0.170 3.830 10 H 0.052 0.948 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.120 4.120 14 C 0.009 3.991 15 H 0.046 0.954 16 C -0.512 4.512 17 H 0.027 0.973 18 C 0.008 3.992 19 N -0.952 5.952 20 Si 0.942 3.058 21 H -0.270 1.270 22 H -0.232 1.232 23 H -0.290 1.290 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 18.404 1.457 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.085 3.915 3 C -0.189 4.189 4 C -0.239 4.239 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.487 6.487 8 N -0.350 5.350 9 C 0.066 3.934 10 H 0.070 0.930 11 C -0.162 4.162 12 C -0.149 4.149 13 C -0.158 4.158 14 C -0.011 4.011 15 H 0.064 0.936 16 C -0.550 4.550 17 H 0.045 0.955 18 C -0.188 4.188 19 N -0.592 5.592 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.154 1.154 23 H -0.217 1.217 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.605 18.099 0.970 19.656 hybrid contribution 1.053 -0.399 0.095 1.130 sum -6.552 17.700 1.065 18.904 Atomic orbital electron populations 1.22448 0.93681 1.03541 1.03738 1.22452 0.94919 0.92813 0.81330 1.21870 1.02252 0.90293 1.04535 1.22488 1.01359 1.02121 0.97955 1.86303 1.71853 1.22967 1.47467 1.18284 0.78868 0.80809 0.82285 1.90861 1.42720 1.70941 1.44220 1.45051 1.54608 1.12334 1.23034 1.21721 0.95070 0.77413 0.99182 0.92962 1.22677 0.95520 1.01454 0.96559 1.22494 0.97566 0.99751 0.95061 1.22614 0.96714 0.99140 0.97346 1.19980 0.94109 0.93924 0.93077 0.93565 1.21234 0.97187 1.13943 1.22630 0.95458 1.26001 0.99292 0.95855 0.97671 1.70065 1.15920 1.27979 1.45265 0.85818 0.78531 0.78632 0.80468 1.19535 1.15441 1.21677 0.91573 0.88841 0.92402 0.91553 0.87675 0.90818 0.92687 0.88623 0.92549 0.75400 0.91344 0.91548 0.90355 0.90110 0.92986 0.92007 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 8.37 71.98 0.60 -3.50 16 2 C 0.12 3.00 1.13 -10.79 -0.01 2.98 16 3 C -0.13 -2.18 8.85 71.98 0.64 -1.55 16 4 C -0.18 -4.77 8.37 71.98 0.60 -4.17 16 5 O -0.37 -11.54 9.94 -55.44 -0.55 -12.09 16 6 C 0.64 23.68 8.05 129.79 1.05 24.73 16 7 O -0.60 -24.89 11.54 19.80 0.23 -24.66 16 8 N -0.69 -24.71 5.04 -566.66 -2.85 -27.56 16 9 C 0.17 6.86 2.89 45.72 0.13 7.00 16 10 H 0.05 2.56 7.02 -2.39 -0.02 2.54 16 11 C -0.12 -4.13 6.54 31.67 0.21 -3.92 16 12 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16 13 C -0.12 -4.48 6.36 31.70 0.20 -4.28 16 14 C 0.01 0.37 2.21 -10.82 -0.02 0.35 16 15 H 0.05 1.94 4.98 -2.39 -0.01 1.93 16 16 C -0.51 -28.83 8.55 25.60 0.22 -28.61 16 17 H 0.03 1.75 7.95 -2.91 -0.02 1.72 16 18 C 0.01 0.49 5.47 84.65 0.46 0.95 16 19 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 20 Si 0.94 42.75 26.94 68.60 1.85 44.60 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.23 -9.22 6.60 99.48 0.66 -8.57 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.75 5.88 -2.39 -0.01 1.73 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.86 5.88 -2.39 -0.01 1.85 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.41 12.57 8.43 -92.71 -0.78 11.79 16 34 H 0.07 2.13 8.04 -2.39 -0.02 2.11 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 2.12 7.85 -2.39 -0.02 2.10 16 39 H 0.06 2.16 7.83 -2.39 -0.02 2.14 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -69.37 315.52 3.45 -65.92 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.19 Total: 26.25 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.30 Total: -13.03 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.55 Total: -86.98 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.32 Total: -36.75 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.85 Total: 44.60 kcal Total: -69.37 3.45 -65.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261223073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.715 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds