Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47136 * 2 1 4 4 C 1.50701 * 109.46663 * 240.00213 * 2 1 3 5 5 H 1.07998 * 119.99544 * 239.99543 * 4 2 1 6 6 C 1.37876 * 120.00173 * 60.00056 * 4 2 1 7 7 N 1.31521 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47400 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 120.00238 * 8 6 4 11 11 H 1.48505 * 109.47235 * 240.00192 * 8 6 4 12 12 C 1.52999 * 109.47179 * 120.00256 * 2 1 3 13 13 C 1.53946 * 113.84014 * 201.35003 * 12 2 1 14 14 N 1.47575 * 86.11655 * 137.96445 * 13 12 2 15 15 C 1.34777 * 134.49202 * 155.36581 * 14 13 12 16 16 O 1.21510 * 120.00551 * 180.02562 * 15 14 13 17 17 O 1.34642 * 119.99614 * 359.97438 * 15 14 13 18 18 C 1.45206 * 116.99751 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46935 * 59.99975 * 18 17 15 20 20 C 1.53004 * 109.47024 * 179.97438 * 18 17 15 21 21 C 1.52996 * 109.47078 * 300.00133 * 18 17 15 22 22 C 1.47582 * 91.01854 * 335.36079 * 14 13 12 23 23 H 1.08991 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46507 * 299.99983 * 1 2 3 25 25 H 1.08999 * 109.47253 * 59.99559 * 1 2 3 26 26 H 0.96997 * 119.99780 * 179.97438 * 7 6 4 27 27 H 1.09002 * 112.94549 * 69.66462 * 12 2 1 28 28 H 1.08997 * 113.77274 * 252.27239 * 13 12 2 29 29 H 1.09007 * 113.76747 * 23.66254 * 13 12 2 30 30 H 1.09002 * 109.46961 * 60.00213 * 19 18 17 31 31 H 1.09003 * 109.46881 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47455 * 299.99894 * 19 18 17 33 33 H 1.09001 * 109.46659 * 60.00484 * 20 18 17 34 34 H 1.09003 * 109.46756 * 179.97438 * 20 18 17 35 35 H 1.08995 * 109.46968 * 300.00008 * 20 18 17 36 36 H 1.09000 * 109.47193 * 60.00179 * 21 18 17 37 37 H 1.09003 * 109.47020 * 179.97438 * 21 18 17 38 38 H 1.08993 * 109.47169 * 300.00041 * 21 18 17 39 39 H 1.09005 * 113.76570 * 270.33847 * 22 14 13 40 40 H 1.08998 * 113.87229 * 138.95208 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 3.1482 -2.2856 -3.6039 10 1 1.1675 -1.5864 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 6 2.0400 -0.7213 1.2492 13 6 3.4839 -0.3521 1.6350 14 7 2.9971 -0.3202 3.0278 15 6 3.5762 -0.4772 4.2346 16 8 2.9064 -0.3962 5.2452 17 8 4.8969 -0.7249 4.3203 18 6 5.4527 -0.8834 5.6524 19 6 4.7677 -2.0577 6.3544 20 6 6.9545 -1.1573 5.5492 21 6 5.2214 0.3971 6.4572 22 6 1.6214 -0.0473 2.5684 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7094 1.1620 -3.4843 27 1 1.8528 -1.7949 1.2262 28 1 4.2070 -1.1441 1.4402 29 1 3.8043 0.6197 1.2592 30 1 4.9325 -2.9699 5.7811 31 1 5.1853 -2.1769 7.3542 32 1 3.6977 -1.8630 6.4280 33 1 7.4427 -0.3209 5.0489 34 1 7.3717 -1.2758 6.5492 35 1 7.1188 -2.0697 4.9760 36 1 4.1514 0.5917 6.5307 37 1 5.6382 0.2780 7.4573 38 1 5.7093 1.2336 5.9571 39 1 1.3946 1.0141 2.4669 40 1 0.8560 -0.5951 3.1181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261253986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -59.030085 kcal Electronic energy + Delta-G solvation = -19558.104993 eV Core-core repulsion = 16567.067718 eV Total energy + Delta-G solvation = -2991.037276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53550 -38.92405 -36.34348 -34.12902 -33.73815 -30.98691 -27.95212 -27.44741 -27.39936 -26.10657 -24.79675 -22.74606 -21.09797 -19.26375 -18.80652 -17.35227 -16.52645 -16.44327 -15.91545 -15.04672 -14.83909 -14.34243 -13.97134 -13.80563 -13.06519 -12.96487 -12.56459 -12.37621 -12.21444 -12.11673 -11.90703 -11.87299 -11.52898 -11.45599 -11.22273 -11.10262 -10.92270 -10.89607 -10.44363 -10.27350 -10.13887 -9.96889 -9.68094 -9.18530 -8.82985 -8.39523 -8.32563 -6.02574 -4.09397 2.31069 3.15715 3.27759 3.36628 3.39804 4.06583 4.40511 4.70241 4.73739 4.87921 5.14645 5.30062 5.39353 5.43322 5.47358 5.61530 5.62266 5.68428 5.70531 5.82393 5.85491 5.92283 6.01315 6.12011 6.17035 6.26584 6.32821 6.57951 6.68912 6.76163 6.89660 7.12298 7.26386 7.68202 7.89453 8.08191 8.09786 8.38712 8.62728 8.94015 9.56237 11.03146 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.035433 B = 0.004428 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.042524 B = 6321.628565 C = 6800.315576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 H 0.031 0.969 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.100 4.100 13 C 0.117 3.883 14 N -0.632 5.632 15 C 0.667 3.333 16 O -0.583 6.583 17 O -0.363 6.363 18 C 0.134 3.866 19 C -0.182 4.182 20 C -0.140 4.140 21 C -0.182 4.182 22 C 0.131 3.869 23 H 0.026 0.974 24 H 0.009 0.991 25 H 0.083 0.917 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.776 -2.420 13.330 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.034 3.966 3 H 0.050 0.950 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.120 4.120 13 C -0.005 4.005 14 N -0.374 5.374 15 C 0.423 3.577 16 O -0.474 6.474 17 O -0.278 6.278 18 C 0.097 3.903 19 C -0.240 4.240 20 C -0.197 4.197 21 C -0.239 4.239 22 C 0.011 3.989 23 H 0.046 0.954 24 H 0.028 0.972 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.660 -2.324 13.753 15.913 hybrid contribution 0.385 -0.399 -0.781 0.958 sum 8.046 -2.723 12.972 15.506 Atomic orbital electron populations 1.21796 0.98342 0.99169 1.00258 1.18672 0.92830 0.95479 0.89637 0.95044 1.21159 1.31120 1.12383 0.90353 0.92505 1.24949 0.95044 0.94948 0.98984 1.69892 1.36768 1.22901 1.23261 0.86575 0.78643 0.79733 0.83265 1.19792 1.21117 1.21107 1.23297 0.93217 1.00832 0.94610 1.23358 0.98895 1.01858 0.76350 1.49142 1.12686 1.72223 1.03307 1.17667 0.80447 0.76415 0.83140 1.90837 1.64212 1.58370 1.34003 1.86334 1.22974 1.84579 1.33879 1.21993 0.93196 0.96057 0.79046 1.22512 1.03975 0.97201 1.00275 1.21842 0.92094 1.02990 1.02753 1.22502 1.05198 0.96523 0.99716 1.23444 0.81590 1.01064 0.92803 0.95440 0.97233 0.89823 0.93061 0.89158 0.90604 0.89482 0.92272 0.91479 0.89341 0.91536 0.90409 0.91517 0.89376 0.91452 0.92288 0.89699 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.79 37.16 0.33 -2.75 16 2 C 0.05 1.19 2.04 -91.77 -0.19 1.00 16 3 H 0.03 0.77 7.98 -51.93 -0.41 0.35 16 4 C -0.51 -12.99 8.54 -34.44 -0.29 -13.29 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.67 16 8 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.10 -1.89 3.23 -89.69 -0.29 -2.18 16 13 C 0.12 2.05 8.42 -2.98 -0.03 2.03 16 14 N -0.63 -11.32 3.61 -184.19 -0.66 -11.99 16 15 C 0.67 12.16 8.22 54.06 0.44 12.60 16 16 O -0.58 -11.35 12.61 -19.28 -0.24 -11.59 16 17 O -0.36 -5.94 9.87 -40.33 -0.40 -6.34 16 18 C 0.13 1.74 1.13 -90.62 -0.10 1.63 16 19 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 20 C -0.14 -1.37 8.85 37.16 0.33 -1.04 16 21 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 22 C 0.13 2.27 7.53 -2.97 -0.02 2.25 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.01 0.17 7.52 -51.93 -0.39 -0.22 16 25 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.51 7.99 -51.92 -0.42 1.10 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.31 5.88 -51.93 -0.31 1.01 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -28.34 322.12 -6.90 -35.24 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.76 Total: 0.15 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.71 Total: -2.07 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.04 Total: -35.65 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.64 Total: -17.93 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.34 -6.90 -35.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.792 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds