Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47136 * 2 1 4 4 C 1.50701 * 109.46663 * 240.00213 * 2 1 3 5 5 H 1.07998 * 119.99544 * 239.99543 * 4 2 1 6 6 C 1.37876 * 120.00173 * 60.00056 * 4 2 1 7 7 N 1.31521 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47400 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 120.00238 * 8 6 4 11 11 H 1.48505 * 109.47235 * 240.00192 * 8 6 4 12 12 C 1.52999 * 109.47179 * 120.00256 * 2 1 3 13 13 C 1.53946 * 113.84014 * 201.35003 * 12 2 1 14 14 N 1.47575 * 86.11655 * 137.96445 * 13 12 2 15 15 C 1.34777 * 134.49202 * 155.36581 * 14 13 12 16 16 O 1.21510 * 120.00551 * 180.02562 * 15 14 13 17 17 O 1.34642 * 119.99614 * 359.97438 * 15 14 13 18 18 C 1.45206 * 116.99751 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46935 * 59.99975 * 18 17 15 20 20 C 1.53004 * 109.47024 * 179.97438 * 18 17 15 21 21 C 1.52996 * 109.47078 * 300.00133 * 18 17 15 22 22 C 1.47582 * 91.01854 * 335.36079 * 14 13 12 23 23 H 1.08991 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46507 * 299.99983 * 1 2 3 25 25 H 1.08999 * 109.47253 * 59.99559 * 1 2 3 26 26 H 0.96997 * 119.99780 * 179.97438 * 7 6 4 27 27 H 1.09002 * 112.94549 * 69.66462 * 12 2 1 28 28 H 1.08997 * 113.77274 * 252.27239 * 13 12 2 29 29 H 1.09007 * 113.76747 * 23.66254 * 13 12 2 30 30 H 1.09002 * 109.46961 * 60.00213 * 19 18 17 31 31 H 1.09003 * 109.46881 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47455 * 299.99894 * 19 18 17 33 33 H 1.09001 * 109.46659 * 60.00484 * 20 18 17 34 34 H 1.09003 * 109.46756 * 179.97438 * 20 18 17 35 35 H 1.08995 * 109.46968 * 300.00008 * 20 18 17 36 36 H 1.09000 * 109.47193 * 60.00179 * 21 18 17 37 37 H 1.09003 * 109.47020 * 179.97438 * 21 18 17 38 38 H 1.08993 * 109.47169 * 300.00041 * 21 18 17 39 39 H 1.09005 * 113.76570 * 270.33847 * 22 14 13 40 40 H 1.08998 * 113.87229 * 138.95208 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 3.1482 -2.2856 -3.6039 10 1 1.1675 -1.5864 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 6 2.0400 -0.7213 1.2492 13 6 3.4839 -0.3521 1.6350 14 7 2.9971 -0.3202 3.0278 15 6 3.5762 -0.4772 4.2346 16 8 2.9064 -0.3962 5.2452 17 8 4.8969 -0.7249 4.3203 18 6 5.4527 -0.8834 5.6524 19 6 4.7677 -2.0577 6.3544 20 6 6.9545 -1.1573 5.5492 21 6 5.2214 0.3971 6.4572 22 6 1.6214 -0.0473 2.5684 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7094 1.1620 -3.4843 27 1 1.8528 -1.7949 1.2262 28 1 4.2070 -1.1441 1.4402 29 1 3.8043 0.6197 1.2592 30 1 4.9325 -2.9699 5.7811 31 1 5.1853 -2.1769 7.3542 32 1 3.6977 -1.8630 6.4280 33 1 7.4427 -0.3209 5.0489 34 1 7.3717 -1.2758 6.5492 35 1 7.1188 -2.0697 4.9760 36 1 4.1514 0.5917 6.5307 37 1 5.6382 0.2780 7.4573 38 1 5.7093 1.2336 5.9571 39 1 1.3946 1.0141 2.4669 40 1 0.8560 -0.5951 3.1181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -74.451346 kcal Electronic energy + Delta-G solvation = -19558.773709 eV Core-core repulsion = 16567.067718 eV Total energy + Delta-G solvation = -2991.705992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.85125 -40.30399 -37.66307 -35.83374 -34.96995 -32.79752 -29.49209 -28.35993 -28.29314 -27.70417 -26.56284 -24.27609 -22.46238 -20.73407 -20.18506 -18.71301 -18.36163 -17.69214 -17.31627 -16.57856 -16.24523 -15.68900 -15.25467 -15.01281 -14.64114 -14.37358 -14.08203 -13.58402 -13.33252 -13.22695 -13.16237 -12.90126 -12.86249 -12.85733 -12.76252 -12.67254 -12.43239 -12.32532 -12.13850 -11.99560 -11.44861 -11.38283 -11.27272 -10.80791 -10.68766 -10.36656 -9.76292 -8.01592 -6.13642 1.04248 1.45498 1.49559 1.58643 1.76823 2.49723 2.80718 3.27315 3.70674 3.76718 3.80896 3.95668 4.13268 4.20674 4.30264 4.50978 4.60839 4.61694 4.68575 4.72092 4.76175 4.82549 4.87676 4.88691 4.93000 5.05062 5.11799 5.21257 5.28627 5.34355 5.40145 5.45713 5.50631 5.71211 6.03014 6.19722 6.44800 6.69288 6.97867 7.26122 7.54706 9.02995 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.035433 B = 0.004428 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.042524 B = 6321.628565 C = 6800.315576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 H 0.010 0.990 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.095 4.095 13 C 0.123 3.877 14 N -0.636 5.636 15 C 0.664 3.336 16 O -0.599 6.599 17 O -0.370 6.370 18 C 0.118 3.882 19 C -0.178 4.178 20 C -0.134 4.134 21 C -0.178 4.178 22 C 0.136 3.864 23 H 0.028 0.972 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.258 0.742 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.228 -3.271 14.375 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.034 3.966 3 H 0.028 0.972 4 C -0.559 4.559 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.114 4.114 13 C 0.001 3.999 14 N -0.378 5.378 15 C 0.421 3.579 16 O -0.491 6.491 17 O -0.285 6.285 18 C 0.082 3.918 19 C -0.235 4.235 20 C -0.191 4.191 21 C -0.235 4.235 22 C 0.016 3.984 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.129 -3.186 14.807 17.685 hybrid contribution -0.041 -0.131 -1.035 1.045 sum 9.088 -3.316 13.772 16.830 Atomic orbital electron populations 1.21662 0.98158 0.99070 0.99965 1.18575 0.92981 0.94410 0.90591 0.97198 1.21524 1.30621 1.12278 0.91480 0.92478 1.25640 0.95456 0.95660 1.01663 1.70019 1.37956 1.24181 1.23618 0.85677 0.78006 0.78831 0.80136 1.19051 1.21238 1.21115 1.23066 0.94301 1.00430 0.93591 1.23295 0.98272 1.02128 0.76162 1.49129 1.12889 1.72319 1.03449 1.17763 0.81085 0.76237 0.82815 1.90837 1.64839 1.59007 1.34463 1.86345 1.21725 1.84203 1.36264 1.22502 0.94967 0.96530 0.77775 1.22466 1.02177 0.96931 1.01951 1.21878 0.89496 1.03028 1.04676 1.22458 1.03360 0.96335 1.01355 1.23396 0.81862 1.01323 0.91847 0.95326 0.94765 0.92829 0.93261 0.89088 0.89675 0.89538 0.92206 0.88556 0.92274 0.91435 0.87431 0.91412 0.92316 0.88525 0.92223 0.89232 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.79 71.98 0.63 -5.17 16 2 C 0.05 2.41 2.04 -11.54 -0.02 2.38 16 3 H 0.01 0.49 7.98 -2.39 -0.02 0.47 16 4 C -0.52 -26.32 8.54 25.60 0.22 -26.10 16 5 H 0.06 2.82 7.74 -2.91 -0.02 2.80 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -50.72 11.32 21.45 0.24 -50.48 16 8 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C -0.09 -3.48 3.23 -10.13 -0.03 -3.51 16 13 C 0.12 4.21 8.42 86.48 0.73 4.94 16 14 N -0.64 -22.23 3.61 -967.07 -3.49 -25.71 16 15 C 0.66 23.77 8.22 129.79 1.07 24.83 16 16 O -0.60 -23.16 12.61 19.81 0.25 -22.91 16 17 O -0.37 -11.72 9.87 -55.51 -0.55 -12.27 16 18 C 0.12 2.84 1.13 -10.79 -0.01 2.82 16 19 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 20 C -0.13 -2.22 8.85 71.98 0.64 -1.58 16 21 C -0.18 -4.08 8.37 71.98 0.60 -3.47 16 22 C 0.14 4.56 7.53 86.48 0.65 5.21 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.03 1.30 7.52 -2.38 -0.02 1.28 16 25 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 26 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 27 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.09 2.96 7.99 -2.38 -0.02 2.94 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.73 5.88 -2.39 -0.01 1.71 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.72 5.88 -2.39 -0.01 1.70 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 2.92 8.10 -2.38 -0.02 2.90 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -60.36 322.12 5.00 -55.36 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.00 Total: 14.11 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 5.52 Total: -1.94 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -3.24 Total: -76.19 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.30 Total: -35.18 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -60.36 5.00 -55.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.090 kcal (2) G-P(sol) polarization free energy of solvation -60.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds