Wall clock time and date at job start Mon Mar 30 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00537 * 2 1 3 13 13 C 1.53944 * 113.74124 * 156.67697 * 12 2 1 14 14 N 1.47588 * 86.11539 * 222.04701 * 13 12 2 15 15 C 1.34776 * 134.48842 * 204.63726 * 14 13 12 16 16 O 1.21506 * 119.99521 * 179.97438 * 15 14 13 17 17 O 1.34634 * 120.00119 * 0.02562 * 15 14 13 18 18 C 1.45198 * 116.99859 * 179.97438 * 17 15 14 19 19 C 1.52991 * 109.47228 * 59.99995 * 18 17 15 20 20 C 1.53007 * 109.47289 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47254 * 299.99717 * 18 17 15 22 22 C 1.47577 * 91.01649 * 24.63908 * 14 13 12 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09004 * 112.94414 * 288.40670 * 12 2 1 28 28 H 1.09005 * 113.77014 * 336.34382 * 13 12 2 29 29 H 1.08999 * 113.77055 * 107.74207 * 13 12 2 30 30 H 1.08999 * 109.47099 * 60.00253 * 19 18 17 31 31 H 1.09002 * 109.47340 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.47457 * 300.00095 * 19 18 17 33 33 H 1.09004 * 109.46911 * 60.00258 * 20 18 17 34 34 H 1.08999 * 109.47188 * 179.97438 * 20 18 17 35 35 H 1.08996 * 109.46735 * 300.00439 * 20 18 17 36 36 H 1.09005 * 109.46899 * 60.00223 * 21 18 17 37 37 H 1.08999 * 109.47384 * 179.97438 * 21 18 17 38 38 H 1.08995 * 109.47715 * 300.00343 * 21 18 17 39 39 H 1.08990 * 113.77079 * 221.06292 * 22 14 13 40 40 H 1.08997 * 113.76889 * 89.65836 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0400 -0.7211 -1.2493 13 6 3.4666 -0.3145 -1.6608 14 7 2.9583 -0.3117 -3.0464 15 6 3.5238 -0.4649 -4.2601 16 8 2.8368 -0.4142 -5.2611 17 8 4.8496 -0.6752 -4.3634 18 6 5.3898 -0.8319 -5.7020 19 6 5.1094 0.4326 -6.5163 20 6 6.9003 -1.0611 -5.6189 21 6 4.7289 -2.0330 -6.3814 22 6 1.5823 -0.0738 -2.5690 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 1.8828 -1.7991 -1.2117 28 1 3.7640 0.6702 -1.3000 29 1 4.2152 -1.0832 -1.4689 30 1 5.5803 1.2883 -6.0324 31 1 5.5154 0.3152 -7.5211 32 1 4.0333 0.5955 -6.5756 33 1 7.0996 -1.9623 -5.0389 34 1 7.3057 -1.1792 -6.6237 35 1 7.3714 -0.2058 -5.1347 36 1 3.6527 -1.8701 -6.4407 37 1 5.1341 -2.1503 -7.3864 38 1 4.9286 -2.9339 -5.8013 39 1 0.8265 -0.6503 -3.1021 40 1 1.3262 0.9815 -2.4749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:06 Heat of formation + Delta-G solvation = -74.246151 kcal Electronic energy + Delta-G solvation = -19557.289124 eV Core-core repulsion = 16565.592030 eV Total energy + Delta-G solvation = -2991.697094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85318 -40.30702 -37.66438 -35.83153 -34.97039 -32.79743 -29.48632 -28.36034 -28.29313 -27.70812 -26.56113 -24.27628 -22.46740 -20.72408 -20.18431 -18.71516 -18.35649 -17.69286 -17.31664 -16.58097 -16.24402 -15.69749 -15.25265 -15.01188 -14.63468 -14.36819 -14.07462 -13.59581 -13.33264 -13.21855 -13.15486 -12.90003 -12.86286 -12.85754 -12.71701 -12.69053 -12.43165 -12.35015 -12.17124 -11.98919 -11.43607 -11.38286 -11.26811 -10.80603 -10.70758 -10.35390 -9.76270 -8.01144 -6.13369 1.04220 1.48619 1.49509 1.55985 1.76865 2.50017 2.80666 3.27466 3.70544 3.76689 3.80896 3.95669 4.13170 4.20821 4.30131 4.50890 4.60779 4.61691 4.68458 4.71864 4.76159 4.82558 4.87661 4.88739 4.93000 5.05090 5.11805 5.21187 5.28624 5.34346 5.39860 5.46059 5.50663 5.70891 6.03040 6.19810 6.44926 6.69240 6.97665 7.26148 7.54802 9.03027 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.035749 B = 0.004412 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.061322 B = 6344.490169 C = 6812.951399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 H 0.010 0.990 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.946 3.054 9 H -0.290 1.290 10 H -0.274 1.274 11 H -0.272 1.272 12 C -0.095 4.095 13 C 0.123 3.877 14 N -0.636 5.636 15 C 0.664 3.336 16 O -0.599 6.599 17 O -0.370 6.370 18 C 0.118 3.882 19 C -0.178 4.178 20 C -0.134 4.134 21 C -0.178 4.178 22 C 0.136 3.864 23 H 0.053 0.947 24 H 0.034 0.966 25 H 0.027 0.973 26 H 0.258 0.742 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -3.101 -14.454 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.035 3.965 3 H 0.028 0.972 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.773 3.227 9 H -0.216 1.216 10 H -0.199 1.199 11 H -0.197 1.197 12 C -0.114 4.114 13 C 0.001 3.999 14 N -0.378 5.378 15 C 0.421 3.579 16 O -0.491 6.491 17 O -0.285 6.285 18 C 0.082 3.918 19 C -0.235 4.235 20 C -0.191 4.191 21 C -0.235 4.235 22 C 0.016 3.984 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.030 -3.014 -14.881 17.665 hybrid contribution -0.032 -0.159 1.024 1.037 sum 8.998 -3.174 -13.857 16.824 Atomic orbital electron populations 1.21667 0.98166 0.99055 0.99971 1.18566 0.92972 0.94400 0.90571 0.97204 1.21473 1.30818 1.12359 0.91514 0.92496 1.25641 0.95432 0.95645 1.01649 1.70005 1.37827 1.24152 1.23744 0.85790 0.78839 0.78764 0.79296 1.21617 1.19927 1.19701 1.23072 0.94284 1.00492 0.93554 1.23308 0.98281 1.02086 0.76210 1.49133 1.12408 1.72857 1.03398 1.17759 0.81177 0.76202 0.82759 1.90836 1.63989 1.58943 1.35376 1.86341 1.21401 1.84764 1.36021 1.22500 0.95201 0.96520 0.77554 1.22457 1.03289 0.96450 1.01310 1.21879 0.89346 1.03167 1.04686 1.22464 1.02273 0.96704 1.02081 1.23398 0.82026 1.01492 0.91489 0.92826 0.94750 0.95350 0.93242 0.89081 0.89532 0.89654 0.92228 0.88526 0.92312 0.91418 0.87433 0.91429 0.92283 0.88559 0.92201 0.89770 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.77 71.98 0.63 -5.18 16 2 C 0.05 2.43 2.06 -11.54 -0.02 2.41 16 3 H 0.01 0.49 7.94 -2.39 -0.02 0.47 16 4 C -0.52 -26.49 8.56 25.60 0.22 -26.27 16 5 H 0.06 2.80 7.74 -2.91 -0.02 2.78 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -50.74 11.32 21.45 0.24 -50.50 16 8 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 9 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 C -0.09 -3.49 3.25 -10.13 -0.03 -3.52 16 13 C 0.12 4.19 8.43 86.48 0.73 4.92 16 14 N -0.64 -22.22 3.61 -967.04 -3.49 -25.71 16 15 C 0.66 23.76 8.22 129.79 1.07 24.82 16 16 O -0.60 -23.16 12.61 19.82 0.25 -22.91 16 17 O -0.37 -11.71 9.87 -55.43 -0.55 -12.26 16 18 C 0.12 2.83 1.13 -10.79 -0.01 2.82 16 19 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 20 C -0.13 -2.22 8.85 71.98 0.64 -1.58 16 21 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 22 C 0.14 4.57 7.46 86.48 0.64 5.22 16 23 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 24 H 0.03 1.31 7.43 -2.38 -0.02 1.29 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 27 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 28 H 0.09 2.96 7.96 -2.38 -0.02 2.94 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.72 5.88 -2.39 -0.01 1.70 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.72 5.88 -2.38 -0.01 1.71 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.09 2.93 8.06 -2.39 -0.02 2.91 16 Total: -1.00 -60.30 321.88 4.99 -55.30 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.00 Total: 14.34 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.51 Total: -2.07 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -3.25 Total: -76.21 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.30 Total: -35.16 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -60.30 4.99 -55.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.943 kcal (2) G-P(sol) polarization free energy of solvation -60.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds