Wall clock time and date at job start Mon Mar 30 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47210 * 2 1 4 4 C 1.53001 * 109.47172 * 240.00075 * 2 1 3 5 5 O 1.45200 * 109.46934 * 120.00075 * 2 1 3 6 6 C 1.34639 * 117.00162 * 59.99648 * 5 2 1 7 7 O 1.21514 * 119.99830 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00140 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00034 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46931 * 180.02562 * 9 8 6 11 11 H 1.08999 * 112.85148 * 316.19256 * 10 9 8 12 12 C 1.53773 * 113.69490 * 87.46465 * 10 9 8 13 13 C 1.53786 * 87.08325 * 89.12577 * 12 10 9 14 14 C 1.53782 * 113.61363 * 185.00240 * 10 9 8 15 15 H 1.08997 * 113.61995 * 156.16225 * 14 10 9 16 16 C 1.50702 * 113.61352 * 25.34342 * 14 10 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 14 10 18 18 C 1.37884 * 119.99942 * 179.72222 * 16 14 10 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.09005 * 109.47285 * 300.00114 * 1 2 3 25 25 H 1.08999 * 109.46938 * 59.99870 * 1 2 3 26 26 H 1.08998 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46851 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46782 * 299.99736 * 3 2 1 29 29 H 1.08997 * 109.46744 * 59.99682 * 3 2 1 30 30 H 1.09004 * 109.46461 * 300.00067 * 4 2 1 31 31 H 1.09000 * 109.47543 * 59.99821 * 4 2 1 32 32 H 1.08998 * 109.47178 * 180.02562 * 4 2 1 33 33 H 0.97001 * 120.00300 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47230 * 60.00444 * 9 8 6 35 35 H 1.08997 * 109.47465 * 300.00095 * 9 8 6 36 36 H 1.09004 * 113.62006 * 203.67248 * 12 10 9 37 37 H 1.08998 * 113.61583 * 334.57926 * 12 10 9 38 38 H 1.09002 * 113.61237 * 270.88660 * 13 12 10 39 39 H 1.08999 * 113.61651 * 139.98155 * 13 12 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 6 1.6747 -4.0672 2.5826 10 6 2.2747 -4.6151 3.8791 11 1 3.3154 -4.3234 4.0202 12 6 1.3945 -4.3754 5.1170 13 6 0.7184 -5.7196 4.7993 14 6 2.0223 -6.1176 4.0878 15 1 2.7504 -6.5958 4.7430 16 6 1.8023 -6.8768 2.8047 17 1 1.8317 -6.3575 1.8581 18 6 1.5697 -8.2354 2.8387 19 7 1.5343 -8.8678 3.9913 20 14 1.3047 -9.1777 1.2477 21 1 1.3931 -8.2423 0.0978 22 1 2.3479 -10.2261 1.1137 23 1 -0.0370 -9.8139 1.2668 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 2.6275 -2.2369 3.0829 34 1 2.0411 -4.6499 1.7376 35 1 0.5878 -4.1367 2.6279 36 1 1.9501 -4.3770 6.0548 37 1 0.7285 -3.5180 5.0199 38 1 -0.1358 -5.6309 4.1281 39 1 0.5027 -6.3196 5.6834 40 1 1.3703 -9.8236 4.0152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261334889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:47 Heat of formation + Delta-G solvation = -75.888565 kcal Electronic energy + Delta-G solvation = -19548.944436 eV Core-core repulsion = 16557.176121 eV Total energy + Delta-G solvation = -2991.768314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51626 -38.45245 -36.84834 -34.30843 -33.53440 -32.23276 -27.47334 -27.38731 -27.35995 -26.58509 -23.05907 -22.50175 -21.69205 -19.90979 -18.35140 -17.36086 -16.65995 -16.09976 -16.01417 -15.05411 -14.72474 -14.39505 -14.29261 -13.99068 -13.31634 -13.23865 -12.71459 -12.57035 -12.16057 -11.91797 -11.88416 -11.80944 -11.50448 -11.32334 -11.25322 -11.12691 -10.97269 -10.70120 -10.33538 -10.27103 -10.04320 -9.83547 -9.40289 -8.87002 -8.74502 -8.53645 -8.30866 -6.01135 -4.03955 2.46026 3.16436 3.32186 3.40766 3.46475 4.44021 4.46590 4.68998 4.72308 4.87410 5.28943 5.37654 5.46122 5.46944 5.56255 5.61657 5.64879 5.70452 5.83340 5.88144 5.90398 6.07988 6.27544 6.29631 6.33124 6.40078 6.51962 6.58457 6.71740 6.81271 6.96262 7.05499 7.30025 7.49589 7.77553 7.84672 7.98492 8.40857 8.71717 8.98252 9.61460 11.08730 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004974 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.265587 B = 5627.420606 C = 6361.261275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.570 6.570 8 N -0.706 5.706 9 C 0.162 3.838 10 C -0.129 4.129 11 H 0.061 0.939 12 C -0.145 4.145 13 C -0.130 4.130 14 C 0.055 3.945 15 H 0.056 0.944 16 C -0.516 4.516 17 H 0.064 0.936 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.886 3.114 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 17.521 -4.422 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.286 6.286 6 C 0.396 3.604 7 O -0.459 6.459 8 N -0.364 5.364 9 C 0.042 3.958 10 C -0.148 4.148 11 H 0.079 0.921 12 C -0.182 4.182 13 C -0.169 4.169 14 C 0.036 3.964 15 H 0.074 0.926 16 C -0.554 4.554 17 H 0.082 0.918 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.713 3.287 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.234 0.766 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.579 17.114 -4.814 17.787 hybrid contribution 0.027 -0.424 -0.495 0.653 sum 0.606 16.689 -5.308 17.524 Atomic orbital electron populations 1.22517 0.94186 1.05265 1.02098 1.21973 0.94275 0.91345 0.82491 1.21845 1.02128 0.92847 1.02842 1.22519 1.01461 1.03803 0.96323 1.86280 1.71886 1.24319 1.46152 1.18171 0.79329 0.80165 0.82768 1.90893 1.41357 1.70294 1.43375 1.45168 1.54806 1.13701 1.22771 1.21331 0.99838 0.75825 0.98830 1.22713 0.97281 1.02326 0.92442 0.92060 1.22996 0.99271 0.98750 0.97211 1.23001 1.00072 0.93939 0.99842 1.19880 0.93161 0.87280 0.96097 0.92604 1.21216 1.48686 0.92810 0.92675 0.91775 1.24984 0.95004 0.97745 0.95858 1.69976 1.49354 1.09163 1.24268 0.86633 0.77733 0.80061 0.84222 1.19571 1.21085 1.21046 0.92329 0.91446 0.89154 0.91595 0.90399 0.91615 0.89127 0.91446 0.92287 0.76631 0.89825 0.91255 0.91416 0.93324 0.91667 0.93409 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 2 C 0.14 1.66 1.13 -90.62 -0.10 1.56 16 3 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 4 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 5 O -0.37 -5.45 9.94 -40.32 -0.40 -5.85 16 6 C 0.64 10.99 8.06 54.05 0.44 11.42 16 7 O -0.57 -11.16 11.88 -19.28 -0.23 -11.39 16 8 N -0.71 -11.46 5.56 -65.28 -0.36 -11.83 16 9 C 0.16 3.10 4.61 -4.04 -0.02 3.08 16 10 C -0.13 -2.46 3.85 -89.81 -0.35 -2.81 16 11 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 12 C -0.14 -2.61 7.62 -25.92 -0.20 -2.81 16 13 C -0.13 -2.87 7.28 -25.92 -0.19 -3.05 16 14 C 0.05 1.31 3.38 -90.96 -0.31 1.00 16 15 H 0.06 1.45 8.13 -51.93 -0.42 1.03 16 16 C -0.52 -13.72 8.23 -34.44 -0.28 -14.00 16 17 H 0.06 1.69 5.60 -52.49 -0.29 1.40 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.54 13.28 55.43 0.74 -24.81 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.35 5.88 -51.93 -0.31 1.05 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.38 5.88 -51.93 -0.31 1.07 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 5.47 8.58 -40.82 -0.35 5.12 16 34 H 0.08 1.79 6.18 -51.93 -0.32 1.47 16 35 H 0.07 1.42 7.39 -51.93 -0.38 1.04 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.06 1.48 7.67 -51.93 -0.40 1.08 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -29.35 319.89 -7.18 -36.52 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.56 Total: 4.78 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.15 Total: -8.61 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.37 Total: -36.63 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.63 Total: -17.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.35 -7.18 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.364 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds