Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47210 * 2 1 4 4 C 1.53001 * 109.47172 * 240.00075 * 2 1 3 5 5 O 1.45200 * 109.46934 * 120.00075 * 2 1 3 6 6 C 1.34639 * 117.00162 * 59.99648 * 5 2 1 7 7 O 1.21514 * 119.99830 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00140 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00034 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46931 * 180.02562 * 9 8 6 11 11 H 1.08999 * 112.85148 * 316.19256 * 10 9 8 12 12 C 1.53773 * 113.69490 * 87.46465 * 10 9 8 13 13 C 1.53786 * 87.08325 * 89.12577 * 12 10 9 14 14 C 1.53782 * 113.61363 * 185.00240 * 10 9 8 15 15 H 1.08997 * 113.61995 * 156.16225 * 14 10 9 16 16 C 1.50702 * 113.61352 * 25.34342 * 14 10 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 14 10 18 18 C 1.37884 * 119.99942 * 179.72222 * 16 14 10 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.09005 * 109.47285 * 300.00114 * 1 2 3 25 25 H 1.08999 * 109.46938 * 59.99870 * 1 2 3 26 26 H 1.08998 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46851 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46782 * 299.99736 * 3 2 1 29 29 H 1.08997 * 109.46744 * 59.99682 * 3 2 1 30 30 H 1.09004 * 109.46461 * 300.00067 * 4 2 1 31 31 H 1.09000 * 109.47543 * 59.99821 * 4 2 1 32 32 H 1.08998 * 109.47178 * 180.02562 * 4 2 1 33 33 H 0.97001 * 120.00300 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47230 * 60.00444 * 9 8 6 35 35 H 1.08997 * 109.47465 * 300.00095 * 9 8 6 36 36 H 1.09004 * 113.62006 * 203.67248 * 12 10 9 37 37 H 1.08998 * 113.61583 * 334.57926 * 12 10 9 38 38 H 1.09002 * 113.61237 * 270.88660 * 13 12 10 39 39 H 1.08999 * 113.61651 * 139.98155 * 13 12 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 6 1.6747 -4.0672 2.5826 10 6 2.2747 -4.6151 3.8791 11 1 3.3154 -4.3234 4.0202 12 6 1.3945 -4.3754 5.1170 13 6 0.7184 -5.7196 4.7993 14 6 2.0223 -6.1176 4.0878 15 1 2.7504 -6.5958 4.7430 16 6 1.8023 -6.8768 2.8047 17 1 1.8317 -6.3575 1.8581 18 6 1.5697 -8.2354 2.8387 19 7 1.5343 -8.8678 3.9913 20 14 1.3047 -9.1777 1.2477 21 1 1.3931 -8.2423 0.0978 22 1 2.3479 -10.2261 1.1137 23 1 -0.0370 -9.8139 1.2668 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 2.6275 -2.2369 3.0829 34 1 2.0411 -4.6499 1.7376 35 1 0.5878 -4.1367 2.6279 36 1 1.9501 -4.3770 6.0548 37 1 0.7285 -3.5180 5.0199 38 1 -0.1358 -5.6309 4.1281 39 1 0.5027 -6.3196 5.6834 40 1 1.3703 -9.8236 4.0152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = -94.238492 kcal Electronic energy + Delta-G solvation = -19549.740148 eV Core-core repulsion = 16557.176121 eV Total energy + Delta-G solvation = -2992.564027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76743 -40.05543 -38.12438 -35.67358 -34.73026 -34.23952 -28.96063 -28.50353 -28.33537 -28.25092 -24.62181 -24.34535 -23.01773 -21.14294 -19.77558 -18.97329 -18.28935 -17.47542 -17.29855 -16.59065 -16.53325 -15.77426 -15.43431 -15.26098 -14.99231 -14.48095 -14.19044 -13.68188 -13.33260 -13.21932 -13.05634 -12.98462 -12.87960 -12.82530 -12.79164 -12.58208 -12.37278 -12.27402 -12.18462 -11.85713 -11.35349 -11.13179 -11.11568 -10.68843 -10.54077 -10.37978 -10.03302 -8.11867 -6.18664 1.23369 1.38242 1.41749 1.52485 1.82299 2.44129 3.17884 3.27139 3.79836 3.83469 3.87833 3.98594 4.02203 4.22027 4.48573 4.55309 4.64035 4.70298 4.76108 4.79236 4.83653 4.86527 4.91484 4.91567 5.04092 5.14130 5.22885 5.25275 5.31978 5.36820 5.45770 5.48722 5.62594 5.68435 5.85834 5.99689 6.38648 6.52823 6.90414 7.42308 7.49250 8.98086 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004974 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.265587 B = 5627.420606 C = 6361.261275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.598 6.598 8 N -0.696 5.696 9 C 0.178 3.822 10 C -0.112 4.112 11 H 0.083 0.917 12 C -0.118 4.118 13 C -0.133 4.133 14 C 0.032 3.968 15 H 0.031 0.969 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.016 3.984 19 N -0.923 5.923 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.283 1.283 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 20.081 -4.867 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.490 6.490 8 N -0.356 5.356 9 C 0.056 3.944 10 C -0.131 4.131 11 H 0.102 0.898 12 C -0.155 4.155 13 C -0.171 4.171 14 C 0.013 3.987 15 H 0.049 0.951 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.183 4.183 19 N -0.562 5.562 20 Si 0.768 3.232 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.209 1.209 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.252 0.748 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.026 19.711 -5.254 20.425 hybrid contribution -0.108 -1.165 -0.407 1.239 sum 0.918 18.545 -5.661 19.412 Atomic orbital electron populations 1.22478 0.94179 1.03428 1.03684 1.22442 0.94566 0.92920 0.81472 1.21870 1.02451 0.90197 1.04434 1.22485 1.01652 1.02050 0.97671 1.86302 1.71662 1.22748 1.47457 1.18282 0.78888 0.80906 0.82374 1.90898 1.42547 1.71153 1.44378 1.44847 1.54932 1.12595 1.23206 1.20880 0.98592 0.77160 0.97733 1.22502 0.98967 0.98624 0.93035 0.89847 1.22859 0.98443 0.96863 0.97375 1.22893 0.98900 0.96578 0.98775 1.19905 0.93864 0.89992 0.94903 0.95091 1.21577 1.47454 0.93220 0.93766 0.92164 1.25675 0.95328 0.98848 0.98431 1.70075 1.50928 1.09323 1.25914 0.85749 0.77644 0.78837 0.80928 1.19561 1.20519 1.20862 0.91750 0.88888 0.92587 0.91119 0.87834 0.90998 0.92650 0.88849 0.91910 0.74787 0.92593 0.92927 0.89261 0.91121 0.92979 0.94845 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.04 8.37 71.98 0.60 -3.44 16 2 C 0.12 2.73 1.13 -10.79 -0.01 2.72 16 3 C -0.13 -1.88 8.85 71.98 0.64 -1.24 16 4 C -0.18 -4.16 8.37 71.98 0.60 -3.55 16 5 O -0.37 -10.17 9.94 -55.49 -0.55 -10.72 16 6 C 0.64 21.51 8.06 129.79 1.05 22.55 16 7 O -0.60 -23.76 11.88 19.80 0.24 -23.53 16 8 N -0.70 -21.68 5.56 -590.86 -3.29 -24.97 16 9 C 0.18 6.75 4.61 86.38 0.40 7.15 16 10 C -0.11 -4.16 3.85 -10.27 -0.04 -4.20 16 11 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 12 C -0.12 -3.99 7.62 31.12 0.24 -3.75 16 13 C -0.13 -5.88 7.28 31.12 0.23 -5.65 16 14 C 0.03 1.56 3.38 -11.01 -0.04 1.52 16 15 H 0.03 1.64 8.13 -2.39 -0.02 1.62 16 16 C -0.52 -28.33 8.23 25.60 0.21 -28.12 16 17 H 0.06 3.26 5.60 -2.91 -0.02 3.24 16 18 C 0.02 0.88 5.46 84.66 0.46 1.34 16 19 N -0.92 -54.19 13.28 21.45 0.28 -53.91 16 20 Si 0.94 44.71 29.54 68.60 2.03 46.74 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.67 5.88 -2.39 -0.01 1.66 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.69 5.88 -2.38 -0.01 1.67 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.42 10.32 8.58 -92.71 -0.80 9.53 16 34 H 0.06 2.44 6.18 -2.39 -0.01 2.43 16 35 H 0.05 2.17 7.39 -2.39 -0.02 2.15 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.07 2.12 8.10 -2.39 -0.02 2.10 16 38 H 0.05 2.40 7.67 -2.39 -0.02 2.38 16 39 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -65.09 319.89 3.27 -61.82 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.23 Total: 19.24 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.33 Total: -14.67 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -3.00 Total: -78.87 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.32 Total: -34.25 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -65.09 3.27 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.416 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds