Wall clock time and date at job start Mon Mar 30 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48500 * 109.47012 * 269.99949 * 3 2 1 5 5 H 1.48505 * 109.46983 * 29.99595 * 3 2 1 6 6 H 1.48498 * 109.47209 * 149.99572 * 3 2 1 7 7 C 1.37877 * 120.00558 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99538 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00273 * 180.27427 * 7 2 1 10 10 C 1.53004 * 109.46709 * 179.72860 * 9 7 2 11 11 N 1.46902 * 109.46707 * 180.02562 * 10 9 7 12 12 C 1.46780 * 111.00086 * 44.09145 * 11 10 9 13 13 C 1.52860 * 110.07279 * 168.47127 * 12 11 10 14 14 C 1.53238 * 109.37979 * 77.04229 * 13 12 11 15 15 C 1.53091 * 108.81505 * 285.43342 * 14 13 12 16 16 C 1.52882 * 109.34615 * 316.36154 * 15 14 13 17 17 C 1.52830 * 109.60357 * 112.57874 * 16 15 14 18 18 C 1.46989 * 111.00079 * 168.29761 * 11 10 9 19 19 H 1.08996 * 109.49688 * 242.56541 * 18 11 10 20 20 C 1.50703 * 109.49178 * 2.62972 * 18 11 10 21 21 O 1.20821 * 120.00614 * 53.04687 * 20 18 11 22 22 O 1.34235 * 119.99525 * 233.05052 * 20 18 11 23 23 H 0.97000 * 120.00036 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47340 * 299.72555 * 9 7 2 25 25 H 1.08993 * 109.47011 * 59.73246 * 9 7 2 26 26 H 1.08999 * 109.46971 * 299.99921 * 10 9 7 27 27 H 1.08994 * 109.47458 * 60.00790 * 10 9 7 28 28 H 1.08995 * 109.37191 * 288.65847 * 12 11 10 29 29 H 1.09002 * 109.37018 * 48.29379 * 12 11 10 30 30 H 1.08994 * 109.48936 * 317.06879 * 13 12 11 31 31 H 1.08997 * 109.50089 * 197.01941 * 13 12 11 32 32 H 1.08998 * 109.57834 * 165.63793 * 14 13 12 33 33 H 1.08995 * 109.68771 * 45.30270 * 14 13 12 34 34 H 1.09000 * 109.49154 * 196.39302 * 15 14 13 35 35 H 1.09003 * 109.49064 * 76.32202 * 15 14 13 36 36 H 1.09003 * 109.44951 * 352.54062 * 16 15 14 37 37 H 1.08993 * 109.44893 * 232.62154 * 16 15 14 38 38 H 1.09004 * 109.49010 * 164.00149 * 17 16 15 39 39 H 1.09001 * 109.49427 * 43.93156 * 17 16 15 40 40 H 0.96696 * 116.99933 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0068 10 6 4.0216 -2.6365 0.0129 11 7 5.4906 -2.6364 0.0196 12 6 6.0122 -1.6496 0.9729 13 6 7.5127 -1.8590 1.1764 14 6 8.2731 -1.2917 -0.0270 15 6 8.0978 -2.2420 -1.2144 16 6 8.2664 -3.6848 -0.7377 17 6 6.9305 -4.4194 -0.8441 18 6 6.0161 -3.9794 0.3039 19 1 6.5842 -3.9583 1.2339 20 6 4.8709 -4.9500 0.4358 21 8 4.0435 -5.0311 -0.4410 22 8 4.7700 -5.7245 1.5275 23 1 -0.4850 0.8400 -0.0004 24 1 3.8787 -0.6826 -0.8831 25 1 3.8712 -0.6777 0.8968 26 1 3.6545 -3.1478 0.9028 27 1 3.6621 -3.1527 -0.8771 28 1 5.8364 -0.6457 0.5866 29 1 5.4987 -1.7628 1.9277 30 1 7.7218 -2.9247 1.2692 31 1 7.8320 -1.3455 2.0832 32 1 9.3316 -1.2046 0.2179 33 1 7.8753 -0.3098 -0.2831 34 1 8.8487 -2.0192 -1.9725 35 1 7.1023 -2.1134 -1.6393 36 1 8.6005 -3.6875 0.2999 37 1 9.0077 -4.1878 -1.3585 38 1 7.1006 -5.4943 -0.7819 39 1 6.4587 -4.1801 -1.7971 40 1 4.0185 -6.3319 1.5669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301024454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:54 Heat of formation + Delta-G solvation = -102.335000 kcal Electronic energy + Delta-G solvation = -20546.117691 eV Core-core repulsion = 17553.202573 eV Total energy + Delta-G solvation = -2992.915118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10372 -39.80106 -37.30909 -36.60374 -34.91291 -34.01245 -32.30308 -29.13960 -28.03627 -26.00956 -24.38885 -23.53831 -22.23803 -21.37009 -19.83854 -19.28616 -19.02498 -17.82043 -17.35752 -16.59007 -16.24127 -16.00458 -15.46668 -15.28742 -15.06718 -14.81095 -14.41658 -14.19725 -14.12109 -13.46024 -13.24712 -13.01014 -12.84560 -12.56877 -12.36817 -12.17325 -12.08557 -11.87801 -11.74651 -11.68611 -11.56394 -11.31775 -11.24309 -10.90989 -10.88275 -10.78856 -9.29661 -8.34171 -6.39863 1.07770 1.32778 1.35225 1.47089 2.00490 2.32535 2.80203 3.00650 3.78216 3.88790 3.98753 4.09782 4.13529 4.24432 4.33284 4.35485 4.41545 4.51784 4.67570 4.80038 4.83969 4.87725 4.93729 5.08130 5.11711 5.16993 5.21111 5.30790 5.38539 5.39783 5.51487 5.55603 5.58372 5.62214 5.82678 5.97863 6.07437 6.24637 6.67247 6.92247 7.24481 8.83140 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020031 B = 0.007574 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.503328 B = 3695.800502 C = 4662.712599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.537 4.537 8 H 0.021 0.979 9 C -0.002 4.002 10 C 0.078 3.922 11 N -0.510 5.510 12 C 0.046 3.954 13 C -0.134 4.134 14 C -0.109 4.109 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.094 4.094 18 C 0.085 3.915 19 H 0.118 0.882 20 C 0.462 3.538 21 O -0.536 6.536 22 O -0.513 6.513 23 H 0.268 0.732 24 H 0.023 0.977 25 H 0.027 0.973 26 H 0.004 0.996 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.970 -6.976 3.012 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.039 0.961 9 C -0.040 4.040 10 C -0.049 4.049 11 N -0.236 5.236 12 C -0.081 4.081 13 C -0.171 4.171 14 C -0.146 4.146 15 C -0.163 4.163 16 C -0.148 4.148 17 C -0.133 4.133 18 C -0.024 4.024 19 H 0.136 0.864 20 C 0.304 3.696 21 O -0.424 6.424 22 O -0.326 6.326 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.022 0.978 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 22.080 -6.513 2.306 23.136 hybrid contribution -1.866 -0.033 0.655 1.978 sum 20.214 -6.546 2.961 21.453 Atomic orbital electron populations 1.70077 1.08427 1.28354 1.52252 1.26050 0.95682 1.03680 0.93696 0.85572 0.79549 0.77622 0.79378 1.19100 1.20599 1.16557 1.21362 0.92034 0.92976 1.51217 0.96057 1.19566 0.93647 0.93857 0.96893 1.22270 0.85874 0.97919 0.98838 1.62531 1.07330 1.03619 1.50166 1.22423 0.96558 0.96210 0.92941 1.22222 0.91870 1.03523 0.99477 1.21595 1.00051 0.98379 0.94623 1.21689 1.02035 0.94727 0.97858 1.21659 0.94930 0.95234 1.03003 1.21660 0.95245 1.00072 0.96284 1.22163 0.91764 0.85600 1.02887 0.86431 1.24377 0.86577 0.79939 0.78690 1.90746 1.42849 1.66268 1.42564 1.84515 1.53457 1.51756 1.42901 0.92318 0.95898 0.95495 0.97761 0.91284 0.91000 0.95658 0.88817 0.89879 0.90426 0.93022 0.91948 0.92235 0.89653 0.90211 0.90282 0.92000 0.71607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.96 45.46 27.47 68.60 1.88 47.35 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 7 C -0.54 -33.08 9.66 25.60 0.25 -32.83 16 8 H 0.02 1.46 7.99 -2.91 -0.02 1.44 16 9 C 0.00 -0.10 3.27 29.85 0.10 0.00 16 10 C 0.08 3.45 3.75 86.30 0.32 3.78 16 11 N -0.51 -16.93 3.13 -875.32 -2.74 -19.67 16 12 C 0.05 1.34 3.94 86.28 0.34 1.68 16 13 C -0.13 -2.64 5.32 30.63 0.16 -2.47 16 14 C -0.11 -2.03 5.77 30.70 0.18 -1.85 16 15 C -0.13 -2.51 5.50 30.59 0.17 -2.34 16 16 C -0.11 -1.85 5.46 30.50 0.17 -1.68 16 17 C -0.09 -2.08 5.01 30.61 0.15 -1.93 16 18 C 0.08 2.28 2.32 44.23 0.10 2.38 16 19 H 0.12 2.57 5.45 -2.39 -0.01 2.56 16 20 C 0.46 14.48 5.35 71.24 0.38 14.87 16 21 O -0.54 -21.38 14.69 21.98 0.32 -21.05 16 22 O -0.51 -12.56 13.42 -51.47 -0.69 -13.25 16 23 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 24 H 0.02 1.13 7.58 -2.39 -0.02 1.11 16 25 H 0.03 1.28 5.54 -2.39 -0.01 1.27 16 26 H 0.00 0.20 6.73 -2.39 -0.02 0.18 16 27 H 0.07 3.45 6.28 -2.39 -0.02 3.43 16 28 H 0.07 2.32 6.67 -2.39 -0.02 2.31 16 29 H 0.03 0.79 7.93 -2.39 -0.02 0.77 16 30 H 0.09 1.60 2.86 -2.39 -0.01 1.59 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.10 7.84 -2.39 -0.02 1.08 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.59 6.33 -2.39 -0.02 1.57 16 36 H 0.09 1.17 5.42 -2.39 -0.01 1.16 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.47 8.05 -2.38 -0.02 1.45 16 39 H 0.06 1.67 7.79 -2.39 -0.02 1.65 16 40 H 0.42 7.26 9.10 -74.06 -0.67 6.59 16 Total: -1.00 -75.39 296.66 2.17 -73.22 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.32 Total: 14.48 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 2.78 Total: -19.59 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.44 Total: -81.15 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.37 Total: -34.31 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -75.39 2.17 -73.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301024454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.120 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds